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Heat and drought are two important constraints to global wheat productivity; understanding the genotypic responses for quality parameters under harsh production conditions (drought and heat) is very important for developing nutrient‐dense wheat varieties. A set of 15 modern bread wheat (Triticum aestivum L. subsp. aestivum) and durum wheat (Triticum turgidum subsp. durum) cultivars were tested in nine environments, including three different production conditions (normal, heat and drought) during 2020–21. Genotype stability performance for yield, nutrition and quality parameters is assessed using multienvironment trials through AMMI and GGE Biplot analysis. We discovered intriguing stress dynamics in grain zinc content (Zn) and grain iron content (Fe). Under heat stress, zinc concentration increases but decreases under drought stress, while iron does the opposite. Selecting zinc, starch and kernel weight under terminal heat stress can boost yield. Protein content and yield are inversely related, making it difficult for breeders to optimise both traits. G × E interactions and stability indices across all environments have found genotypes with high‐yielding stable genotypes, G12 (MP1358) (42.09 ppm) and G5 (HI1544) (42.41 ppm) have high Fe content. G12 (MP1358) (14.98%) ranked highest in protein concentration. Meanwhile, for Zn content, G11 (MACS 4058) (45.23 ppm) and G15 (WH730) (42.44 ppm) were top performers across environments. G7 (HI 1636) and G12 (MP1358) stand out as a win‐win genotype for their high potential and stability in yield, protein, Zn and Fe content. Our study shows the complex relationships and possible suggestions for targeted breeding programmes under heat and drought stress conditions to improve wheat grain quality and micronutrient profiles without yield loss. [ABSTRACT FROM AUTHOR]

Background: Wheat rusts are important biotic stresses, development of rust resistant cultivars through molecular approaches is both economical and sustainable. Extensive phenotyping of large mapping populations under diverse production conditions and high-density genotyping would be the ideal strategy to identify major genomic regions for rust resistance in wheat. The genome-wide association study (GWAS) population of 280 genotypes was genotyped using a 35 K Axiom single nucleotide polymorphism (SNP) array and phenotyped at eight, 10, and, 10 environments, respectively for stem/black rust (SR), stripe/yellow rust (YR), and leaf/brown rust (LR)., Results: Forty-one Bonferroni corrected marker-trait associations (MTAs) were identified, including 17 for SR and 24 for YR. Ten stable MTAs and their best combinations were also identified. For YR, AX-94990952 on 1A + AX-95203560 on 4A + AX-94723806 on 3D + AX-95172478 on 1A showed the best combination with an average co-efficient of infection (ACI) score of 1.36. Similarly, for SR, AX-94883961 on 7B + AX-94843704 on 1B and AX-94883961 on 7B + AX-94580041 on 3D + AX-94843704 on 1B showed the best combination with an ACI score of around 9.0. The genotype PBW827 have the best MTA combinations for both YR and SR resistance. In silico study identifies key prospective candidate genes that are located within MTA regions. Further, the expression analysis revealed that 18 transcripts were upregulated to the tune of more than 1.5 folds including 19.36 folds (TraesCS3D02G519600) and 7.23 folds (TraesCS2D02G038900) under stress conditions compared to the control conditions. Furthermore, highly expressed genes in silico under stress conditions were analyzed to find out the potential links to the rust phenotype, and all four genes were found to be associated with the rust phenotype., Conclusion: The identified novel MTAs, particularly stable and highly expressed MTAs are valuable for further validation and subsequent application in wheat rust resistance breeding. The genotypes with favorable MTA combinations can be used as prospective donors to develop elite cultivars with YR and SR resistance., (© 2024. The Author(s).)