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In recent years, the continued detection of complex organic molecules of prebiotic interest has refueled the interest on a panspermic origin of life. The prebiotic molecule glyceraldehyde is proposed to be formed from (Z)-1,2-ethenediol, a molecule recently detected towards the G+0.693-0.027 molecular cloud at the galactic center. In this work, we computationally simulate the formation of (Z)-1,2-ethenediol from vinyl alcohol on the surface of amorphous solid water in a two-step synthesis involving a OH addition and a H abstraction reaction. In total, we considered all reaction possibilities of the 1,1 and 1,2-OH addition to vinyl alcohol followed by H-abstraction or H-addition reactions on the resulting radicals. The combination of these reactions is capable of explaining the formation of (Z)-1,2-ethenediol provided a suprathermal diffusion of OH. We also conclude that our proposed formation pathway is not selective and also yields other abstraction and addition products. Key in our findings is the connection between the adsorption modes of the reactants and intermediates and the stereoselectivity of the reactions., Comment: This version is the unedited accepted version in the Astrophysical Journal

Chemical processes taking place on ice-grain mantles are pivotal to the complex chemistry of interstellar environments. In this study, we conducted a comprehensive analysis of the catalytic effects of an amorphous solid water (ASW) surface on the reaction between ammonia (NH$_3$) and formaldehyde (H$_2$CO) to form aminomethanol (NH$_2$CH$_2$OH) using density functional theory. We identified potential catalytic sites based on the binding energy distribution of NH$_3$ and H$_2$CO reactants, on a set-of-clusters surface model composed of 22 water molecules and found a total of 14 reaction paths. Our results indicate that the catalytic sites can be categorized into four groups, depending on the interactions of the carbonyl oxygen and the amino group with the ice surface in the reactant complex. A detailed analysis of the reaction mechanism using Intrinsic Reaction Coordinate and reaction force analysis revealed three distinct chemical events for this reaction: formation of the C--N bond, breaking of the N--H bond, and formation of the O--H hydroxyl bond. Depending on the type of catalytic site, these events can occur within a single, concerted, albeit asynchronous, step, or can be isolated in a step-wise mechanism, with the lowest overall transition state energy observed at 1.3 kcal mol$^{-1}$. A key requirement for the low-energy mechanism is the presence of a pair of dangling OH bonds on the surface, found at 5\% of the potential catalytic sites on an ASW porous surface.

The past decade has seen tremendous breakthroughs in computation and there is no indication that this will slow any time soon. Machine learning, large-scale computing resources, and increased industry focus have resulted in rising investments in computer-driven solutions for data management, simulations, and model generation. However, with this growth in computation has come an even larger expansion of data and with it, complexity in data storage, sharing, and tracking. In this work, we introduce ZnTrack, a Python-driven data versioning tool. ZnTrack builds upon established version control systems to provide a user-friendly and easy-to-use interface for tracking parameters in experiments, designing workflows, and storing and sharing data. From this ability to reduce large datasets to a simple Python script emerges the concept of Data as Code, a core component of the work presented here and an undoubtedly important concept as the age of computation continues to evolve. ZnTrack offers an open-source, FAIR data compatible Python package to enable users to harness these concepts of the future., Comment: 22 pages, 10 figures, 2MB PDF