32 results on '"Jian Xie"'
Search Results
2. Metabolomics combined with network pharmacology reveals the potential development value of Campanumoea javanica Bl. and its metabolite differences with Codonopsis Radix
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Jie Peng, Sha Liu, Xuanlin Wu, Shuo Li, Jian Xie, Yong Wang, Qiuyang Yao, Faming Wu, and Delin Zhang
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Campanumoea javanica Bl. ,Codonopsis radix ,Metabolite ,Widely targeted metabolomics ,Network pharmacology ,Botany ,QK1-989 - Abstract
Abstract Campanumoea javanica Bl. (CJ) traditionally used in Southwestern China, is now widely consumed as a health food across the nation. Due to its similar efficacy to Codonopsis Radix (CR) and their shared botanical family, CJ is often used as a substitute for CR. According to the Chinese Pharmacopoeia, Codonopsis pilosula var. modesta (Nannf.) L.T. Shen (CPM), Codonopsis pilosula (Franch.) Nannf. (CP), and Codonopsis tangshen Oliv. (CT) are the primary sources of CR. However, details on the differences in composition, effectiveness, and compositional between CJ and CR are still limited. Besides, there is little evidence to support the application of CJ as a drug. In this study, we employed widely targeted metabolomics, network pharmacology analysis, and molecular docking to explore the disparities in metabolite profiles between CJ and CR and to predict the pharmacological mechanisms of the dominant differential metabolites of CJ and their potential medicinal applications. The widely targeted metabolomics results indicated that 1,076, 1,102, 1,102, and 1,093 compounds, most phenolic acids, lipids, amino acids, and flavonoids, were characterized in CJ, CPM, CP, and CT, respectively. There were an average of 1061 shared compounds in CJ and CRs, with 95.07% similarity in metabolic profiles. Most of the metabolites in CJ were previously unreported. Twelve of the seventeen dominant metabolites found in CJ were directly associated with treating cancer and lactation, similar to the traditional medicinal efficacy. The molecular docking results showed that the dominant metabolites of CJ had good docking activity with the core targets PIK3R1, PIK3CA, ESR1, HSP90AA1, EGFR, and AKT1. This study provides a scientific basis for understanding the similarities and differences between CJ and CR at the metabolome level, offering a theoretical foundation for developing innovative medications from CJ. Additionally, it significantly enhances the metabolite databases for both CJ and CR.
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- 2024
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3. An unmanned aerial vehicle light detection and ranging Simultaneous Localisation And Mapping algorithm based on factor graph optimisation for tunnel 3D mapping
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Jian Xie, Zhuoping Wu, Bing Wang, Aoshu Xu, Yunfei Chen, and Jing Li
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autonomous aerial vehicles ,navigation ,optical radar ,optical sensors ,sensor fusion ,Telecommunication ,TK5101-6720 - Abstract
Abstract The current mature Simultaneous Localisation And Mapping (SLAM) algorithms, when applied to tunnel scenarios with point cloud degradation and poor lighting conditions, often lead to a sharp increase in the estimated attitude error of the unmanned aerial vehicle (UAV), or even prevent the UAV from moving autonomously due to severe feature degradation. To address the above problems, the authors propose a SLAM algorithm based on factor graph optimisation, Iterative Closest Point and Normal Distributions Transform algorithms. A front‐end point cloud registration module and a back‐end construction algorithm based on filtering and graph optimisation are designed. To verify the effectiveness of the proposed algorithm, experiments are conducted on KITTI dataset and real tunnel scenes, and compared with LiDAR Odometry and Mapping (LOAM) and lightweight and ground optimised (LeGO)‐LOAM algorithms. The results show that the average processing time of the proposed method is about 75 ms, which can meet the real‐time requirements of autonomous aerial vehicles. Compared with LOAM and LeGO‐LOAM in the real tunnel experiment, the proposed method shows the tunnel 3D map construction.
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- 2024
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4. The characteristics of auditorial event-related potential under propofol sedation associated with preoperative cognitive performance in glioma patients
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Xinxin Wang, Wanning Yang, Minyu Jian, Yi Liang, Zuocheng Yang, Yiwei Chen, Bo Ma, Chengwei Wang, Zonggang Hou, Zhenghai Deng, Haiyang Liu, Jian Xie, and Ruquan Han
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propofol sedation ,mild cognitive impairment ,auditory event-related potentials ,theta-ERSP ,glioma ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
BackgroundGlioma patients often experience neurocognitive deficits, particularly mild cognitive impairment (MCI), which affects their perioperative safety. The use of auditory event-related potentials (AERPs) might be a promising method for reflecting perioperative cognitive function in patients, even under unresponsive sedation. In this study, we aimed to investigate the relationships between the AERP under sedation and preoperative cognitive performance in glioma patients.MethodsPatients with primary supratentorial gliomas who were scheduled for elective craniotomy under general anesthesia were included in this prospective observational study. The patients were categorized into MCI and non-MCI groups based on their preoperative Montreal Cognitive Assessment (MoCA) scores. AERP characteristics, including mismatch negativity (MMN), P300, and event-related spectral perturbation (ERSP) in the theta bands, were analyzed under different propofol-induced sedation conditions. Differences in these parameters between groups and their relationships with preoperative cognitive performance were subsequently investigated.ResultsTwenty-nine eligible patients were included in the analysis. Compared to that in the non-MCI group, the average amplitude of the MMN component evoked by the novel stimulus significantly decreased during the recovery period in the MCI group (−3.895 ± 1.961 μV vs. -1.617 ± 1.831 μV, p = 0.003). Theta-ERSPs also differed between the two groups under standard (0.021 ± 0.658 μV2/Hz vs. 0.515 ± 0.622 μV2/Hz, p = 0.048) and novel (0.212 ± 0.584 μV2/Hz vs. 0.823 ± 0.931 μV2/Hz, p = 0.041) stimulation conditions under light sedation. After correcting for age, education level, site of lesion, WHO pathological grade and combined symptomatic epilepsy as confounders, the frontal theta-ERSP induced by standard and novel stimuli under light sedation was inversely related to the preoperative MoCA score (standard stimuli: β = −0.491, p = 0.011; novel stimuli: β = −0.594, p = 0.007), as was the average MMN amplitude induced by novel stimuli during the recovery period (β = −0.356, p = 0.035).ConclusionThe AERP neural response characteristics of glioma patients during propofol sedation were associated with preoperative cognitive performance, which might be a potential neurophysiological indicator for monitoring perioperative cognitive function, especially theta-ERSP.
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- 2024
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5. A Self‐Constructed Mg2+/K+ Co‐Doped Prussian Blue with Superior Cycling Stability Enabled by Enhanced Coulombic Attraction
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Zheng Xu, Fengqin Chen, Yinda Li, Yunhao Lu, Aijun Zhou, Jicheng Jiang, Xiongwen Xu, Jian Tu, Bin Pan, Fang Chen, Yi Huang, Xinbing Zhao, and Jian Xie
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Mg2+/K+ co‐doping ,prussian blue ,sea water ,sodium ion batteries ,sodium salts recycling ,Science - Abstract
Abstract Prussian blue (PB) is regarded as a promising cathode for sodium‐ion batteries because of its sustainable precursor elements (e.g., Mn, Fe), easy preparation, and unique framework structure. However, the unstable structure and inherent crystal H2O restrain its practical application. For this purpose, a self‐constructed trace Mg2+/K+ co‐doped PB prepared via a sea‐water‐mediated method is proposed to address this problem. The Mg2+/K+ co‐doping in the Na sites of PB is permitted by both thermodynamics and kinetics factors when synthesized in sea water. The results reveal that the introduced Mg2+ and K+ are immovable in the PB lattices and can form stronger K‒N and Mg‒N Coulombic attraction to relieve phase transition and element dissolution. Besides, the Mg2+/K+ co‐doping can reduce defect and H2O contents. As a result, the PB prepared in sea water exhibits an extremely long cycle life (80.1% retention after 2400 cycles) and superior rate capability (90.4% capacity retention at 20 C relative to that at 0.1 C). To address its practical applications, a sodium salts recycling strategy is proposed to greatly reduce the PB production cost. This work provides a self‐constructed Mg2+/K+ co‐doped high‐performance PB at a low preparation cost for sustainable, large‐scale energy storage.
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- 2024
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6. Multifunctional human serum albumin-crosslinked and self-assembling nanoparticles for therapy of periodontitis by anti-oxidation, anti-inflammation and osteogenesis
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Bangping Cao, Xuanbo Da, Wenjing Wu, Jian Xie, Xuejing Li, Xin Wang, Hui Xu, Jianfang Gao, Hui Yang, and Jiansheng Su
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Nano-enzyme ,Periodontitis ,Anti-oxidation ,Anti-inflammation ,Osteogenesis ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Periodontitis is a chronic inflammatory disease that can result in the irreversible loss of tooth-supporting tissues and elevate the likelihood and intensity of systemic diseases. The presence of reactive oxygen species (ROS) and associated related oxidative stress is intricately linked to the progression and severity of periodontal inflammation. Targeted removal of local ROS may serve to attenuate inflammation, improve the unfavorable periodontal microenvironment and potentially reverse ensuing pathological cascades. These ROS scavenging nanoparticles, which possess additional characteristics such as anti-inflammation and osteogenic differentiation, are highly sought after for the treatment of periodontitis. In this study, negative charged human serum albumin-crosslinked manganese-doped self-assembling Prussian blue nanoparticles (HSA-MDSPB NPs) were fabricated. These nanoparticles demonstrate the ability to scavenge multiple ROS including superoxide anion, free hydroxyl radicals, singlet oxygen and hydrogen peroxide. Additionally, HSA-MDSPB NPs exhibit the capacity to alleviate inflammation in gingiva and alveolar bone both in vitro and in vivo. Furthermore, HSA-MDSPB NPs have been shown to play a role in promoting the polarization of macrophages from the M1 to M2 phenotype, resulting in reduced production of pro-inflammatory cytokines. More attractively, HSA-MDSPB NPs have been demonstrated to enhance cellular osteogenic differentiation. These properties of HSA-MDSPB NPs contribute to decreased inflammation, extracellular matrix degradation and bone loss in periodontal tissue. In conclusion, the multifunctional nature of HSA-MDSPB NPs provides a promising therapeutic approach for the treatment of periodontitis.
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- 2024
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7. Exploring the neural link between childhood maltreatment and depression: a default mode network rs-fMRI study
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Jian Lin, Jialing Huang, Yun Wu, Linqi Zhou, Changyuan Qiao, Jian Xie, and Changchun Hu
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depression ,childhood maltreatment ,functional connectivity ,independent component analysis (ICA) ,default mode network (DMN) ,Psychiatry ,RC435-571 - Abstract
BackgroundChildhood maltreatment (CM) is increasingly recognized as a significant risk factor for major depressive disorder (MDD), yet the neural mechanisms underlying the connection between CM and depression are not fully understood. This study aims to deepen our understanding of this relationship through neuroimaging, exploring how CM correlates with depression.MethodsThe study included 56 MDD patients (33 with CM experiences and 23 without) and 23 healthy controls. Participants were assessed for depression severity, CM experiences, and underwent resting-state functional MRI scans. Independent Component Analysis was used to examine differences in functional connectivity (FC) within the Default Mode Network (DMN) among the groups.ResultsMDD patients with CM experiences exhibited significantly stronger functional connectivity in the left Superior Frontal Gyrus (SFG) and right Anterior Cingulate Cortex (ACC) within the DMN compared to both MDD patients without CM experiences and healthy controls. FC in these regions positively correlated with Childhood Trauma Questionnaire scores. Receiver Operating Characteristic (ROC) curve analysis underscored the diagnostic value of FC in the SFG and ACC for identifying MDD related to CM. Additionally, MDD patients with CM experiences showed markedly reduced FC in the left medial Prefrontal Cortex (mPFC) relative to MDD patients without CM experiences, correlating negatively with Childhood Trauma Questionnaire scores.ConclusionOur findings suggest that increased FC in the ACC and SFG within the DMN is associated with CM in MDD patients. This enhanced connectivity in these brain regions is key to understanding the predisposition to depression related to CM.
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- 2024
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8. Adaptive interference mitigation space‐time array reconfiguration by joint selection of antenna and delay tap
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Yandong Sun, Jian Xie, Yanyun Gong, Zhaolin Zhang, and Ling Wang
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adaptive antenna arrays ,adaptive signal processing ,array signal processing ,interference suppression ,satellite navigation ,Telecommunication ,TK5101-6720 - Abstract
Abstract Space‐time adaptive processing (STAP) array has found extensive use in the global navigation satellite system for interference suppression. Nevertheless, the conventional space‐time array necessitates multiple antennas and time delay taps, resulting in a heavy burden on both hardware and computation resources. Thus, lowering the cost and complexity of STAP becomes a considerable problem demanding prompt solutions. This work designs a space‐time array reconfiguration scheme based on the joint selection strategy of the antenna and delay tap to address this problem. The reconstructed array can induce a high signal to interference plus noise power ratio (SINR) when using fewer antennas and delay taps. The space‐time correlation coefficient (STCC) is first presented to manifest the influence of reconfiguration on output SINR. Then, we formulate the space‐time array reconfiguration mathematical model, aiming to minimise STCC. Two reconfiguration methods are provided to solve the optimal array configuration of antennas and delay taps that can reach the minimum STCC and maximum SINR. The optimal antenna‐delay tap pairs are finally selected to comprise the reconstructed array. Substantial simulation experiments verify that the presented scheme and strategy are effective and reliable in space‐time array reconfiguration.
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- 2024
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9. Inhibition of OGFOD1 by FG4592 confers neuroprotection by activating unfolded protein response and autophagy after ischemic stroke
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Jian Xie, Yuan Zhang, Bin Li, Wen Xi, Yu Wang, Lu Li, Chenchen Liu, Ling Shen, Bing Han, Yan Kong, HongHong Yao, and Zhijun Zhang
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FG4592 ,Ischemic stroke ,OGFOD1 ,Unfolded protein response ,Autophagy ,Medicine - Abstract
Abstract Background Acute ischemic stroke is a common neurological disease with a significant financial burden but lacks effective drugs. Hypoxia-inducible factor (HIF) and prolyl hydroxylases (PHDs) participate in the pathophysiological process of ischemia. However, whether FG4592, the first clinically approved PHDs inhibitor, can alleviate ischemic brain injury remains unclear. Methods The infarct volumes and behaviour tests were first analyzed in mice after ischemic stroke with systemic administration of FG4592. The knockdown of HIF-1α and pretreatments of HIF-1/2α inhibitors were then used to verify whether the neuroprotection of FG4592 is HIF-dependent. The targets predicting and molecular docking methods were applied to find other targets of FG4592. Molecular, cell biological and gene knockdown methods were finally conducted to explore the potential neuroprotective mechanisms of FG4592. Results We found that the systemic administration of FG4592 decreased infarct volume and improved neurological defects of mice after transient or permanent ischemia. Meanwhile, FG4592 also activated autophagy and inhibited apoptosis in peri-infarct tissue of mice brains. However, in vitro and in vivo results suggested that the neuroprotection of FG4592 was not classical HIF-dependent. 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 (OGFOD1) was found to be a novel target of FG4592 and regulated the Pro-62 hydroxylation in the small ribosomal protein s23 (Rps23) with the help of target predicting and molecular docking methods. Subsequently, the knockdown of OGFOD1 protected the cell against ischemia/reperfusion injury and activated unfolded protein response (UPR) and autophagy. Moreover, FG4592 was also found to activate UPR and autophagic flux in HIF-1α independent manner. Blocking UPR attenuated the neuroprotection, pro-autophagy effect and anti-apoptosis ability of FG4592. Conclusion This study demonstrated that FG4592 could be a candidate drug for treating ischemic stroke. The neuroprotection of FG4592 might be mediated by inhibiting alternative target OGFOD1, which activated the UPR and autophagy and inhibited apoptosis after ischemic injury. The inhibition of OGFOD1 is a novel therapy for ischemic stroke.
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- 2024
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10. Traditional knowledge of animal-derived medicines used by Gelao community in Northern Guizhou, China
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Xiaoqi Liu, Shuo Li, Yi Feng, Xingxing Chen, Yuhan Ma, Hai Xiao, Yongxia Zhao, Sha Liu, Guishen Zheng, Xiujuan Yang, Faming Wu, and Jian Xie
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Ethnobiology ,Gelao ethnicity ,Traditional medicine ,Animal-derived medicines ,Sustainable utilization ,Other systems of medicine ,RZ201-999 ,Botany ,QK1-989 - Abstract
Abstract Introduction This study aims to document and preserve the traditional medicinal knowledge of the Gelao community in Northern Guizhou, China, providing valuable insights for modern pharmacological research and the development of these traditional remedies. Methods Our methodology encompassed a blend of literature review, community interviews, and participatory observation to delve into the traditional knowledge of animal-derived medicines among the Gelao community. We employed quantitative ethnological and ecological assessment techniques to evaluate the significance of these practices. Informed consent was secured before conducting interviews, with a focus on ascertaining the types of medicines familiar to the informants, including their local names, sources, methods of preparation, application techniques, diseases treated, frequency of use, and safety considerations. Results Our research cataloged 55 varieties of animal-derived medicines utilized by the Gelao people. Out of these, 34 originate from wild animals, mainly encompassing small insects, reptiles, and aquatic species; the remaining 21 are derived from domesticated animals, largely involving their tissues, organs, and various physiological or pathological by-products. These medicines are primarily applied in treating pediatric ailments (13 types), internal disorders (11 types), gynecological issues (3 types), dermatological problems (7 types), ENT conditions (3 types), trauma-related injuries (5 types), joint and bone ailments (5 types), infections (2 types), dental issues (2 types), and urolithiasis (1 type), with three types being used for other miscellaneous conditions. Commonly utilized medicines, such as honey, Blaps beetle, chicken gallstones, and snake-based products, are preferred for their availability, edibility, and safety within the Gelao communities. Conclusion The Gelao community’s traditional medicines represent a rich diversity of animal sources, showcasing extensive expertise and knowledge in their processing and clinical applications. This wealth of traditional knowledge offers novel perspectives for the contemporary pharmacological study and development of these remedies. Additionally, our research plays a crucial role in aiding the preservation and continuation of this invaluable cultural heritage.
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- 2024
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11. Algorithms and statistical analysis for linear structured weighted total least squares problem
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Jian Xie, Tianwei Qiu, Cui Zhou, Dongfang Lin, and Sichun Long
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Linear structured weighted total least squares ,Errors-in-variables ,Errors-in-observations ,Functional model modification ,Stochastic model modification ,Accuracy evaluation ,Geodesy ,QB275-343 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
Weighted total least squares (WTLS) have been regarded as the standard tool for the errors-in-variables (EIV) model in which all the elements in the observation vector and the coefficient matrix are contaminated with random errors. However, in many geodetic applications, some elements are error-free and some random observations appear repeatedly in different positions in the augmented coefficient matrix. It is called the linear structured EIV (LSEIV) model. Two kinds of methods are proposed for the LSEIV model from functional and stochastic modifications. On the one hand, the functional part of the LSEIV model is modified into the errors-in-observations (EIO) model. On the other hand, the stochastic model is modified by applying the Moore-Penrose inverse of the cofactor matrix. The algorithms are derived through the Lagrange multipliers method and linear approximation. The estimation principles and iterative formula of the parameters are proven to be consistent. The first-order approximate variance-covariance matrix (VCM) of the parameters is also derived. A numerical example is given to compare the performances of our proposed three algorithms with the STLS approach. Afterwards, the least squares (LS), total least squares (TLS) and linear structured weighted total least squares (LSWTLS) solutions are compared and the accuracy evaluation formula is proven to be feasible and effective. Finally, the LSWTLS is applied to the field of deformation analysis, which yields a better result than the traditional LS and TLS estimations.
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- 2024
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12. Toward Zero-Net bidirectional power transfer in Low-Voltage smart microgrids
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Qusay Salem and Jian Xie
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Simulation based optimization ,Power flow algorithm ,Smart Microgrid ,P-U droop ,Distributed Generator ,Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 - Abstract
This paper presents a new approach for controlling the bidirectional active power flow using a series voltage source inverter placed in between the microgrid and the main grid in LV distribution network. Implementing the control operation of the series VSI resembles the form of a simulation-based optimization where a novel overall power flow algorithm is implemented to investigate the system behavior. This algorithm considers controlling the active power of the series VSI and the active power between the main grid and the microgrid to zero net energy. The algorithm has three nested levels working together to satisfy an active power reference at PCC. The results revealed in this paper are (1) investigating different settings for the DG droop characteristics to determine the limits of the proposed approach and (2) regulating the magnitude and phase angle of the series VSI according to a desired active power reference at PCC. The obtained results confirm the effectiveness and feasibility of the proposed approach and the capability of the overall power flow algorithm in satisfying the zero-net power transfer target.
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- 2024
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13. Comprehensive analysis of hypoxia-related genes in diagnosis and immune infiltration in acute myocardial infarction: based on bulk and single-cell RNA sequencing data
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Guoqing Liu, Wang Liao, Xiangwen Lv, Miaomiao Zhu, Xingqing Long, and Jian Xie
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acute myocardial infarction ,hypoxia ,diagnostic model ,single-cell analysis ,immune infiltration ,Biology (General) ,QH301-705.5 - Abstract
BackgroundHypoxia has been found to cause cellular dysfunction and cell death, which are essential mechanisms in the development of acute myocardial infarction (AMI). However, the impact of hypoxia-related genes (HRGs) on AMI remains uncertain.MethodsThe training dataset GSE66360, validation dataset GSE48060, and scRNA dataset GSE163956 were downloaded from the GEO database. We identified hub HRGs in AMI using machine learning methods. A prediction model for AMI occurrence was constructed and validated based on the identified hub HRGs. Correlations between hub HRGs and immune cells were explored using ssGSEA analysis. Unsupervised consensus clustering analysis was used to identify robust molecular clusters associated with hypoxia. Single-cell analysis was used to determine the distribution of hub HRGs in cell populations. RT-qPCR verified the expression levels of hub HRGs in the human cardiomyocyte model of AMI by oxygen-glucose deprivation (OGD) treatment in AC16 cells.ResultsFourteen candidate HRGs were identified by differential analysis, and the RF model and the nomogram based on 8 hub HRGs (IRS2, ZFP36, NFIL3, TNFAIP3, SLC2A3, IER3, MAFF, and PLAUR) were constructed, and the ROC curves verified its good prediction effect in training and validation datasets (AUC = 0.9339 and 0.8141, respectively). In addition, the interaction between hub HRGs and smooth muscle cells, immune cells was elucidated by scRNA analysis. Subsequently, the HRG pattern was constructed by consensus clustering, and the HRG gene pattern verified the accuracy of its grouping. Patients with AMI could be categorized into three HRG subclusters, and cluster A was significantly associated with immune infiltration. The RT-qPCR results showed that the hub HRGs in the OGD group were significantly overexpressed.ConclusionA predictive model of AMI based on HRGs was developed and strongly associated with immune cell infiltration. Characterizing patients for hypoxia could help identify populations with specific molecular profiles and provide precise treatment.
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- 2024
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14. Connectomic insights into the impact of 1p/19q co-deletion in dominant hemisphere insular glioma patients
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Zuo-cheng Yang, Bo-wen Xue, Xin-yu Song, Chuan-dong Yin, Fang-cheng Yeh, Gen Li, Zheng-hai Deng, Sheng-jun Sun, Zong-gang Hou, and Jian Xie
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insular gliomas ,1p/19q co-deletion ,structural connectivity ,graph theoretical networks ,tractography ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
ObjectivesThis study aimed to elucidate the influences of 1p/19q co-deletion on structural connectivity alterations in patients with dominant hemisphere insular diffuse gliomas.MethodsWe incorporated 32 cases of left insular gliomas and 20 healthy controls for this study. Using diffusion MRI, we applied correlational tractography, differential tractography, and graph theoretical analysis to explore the potential connectivity associated with 1p/19q co-deletion.ResultsThe study revealed that the quantitative anisotropy (QA) of key deep medial fiber tracts, including the anterior thalamic radiation, superior thalamic radiation, fornix, and cingulum, had significant negative associations with 1p/19q co-deletion (FDR = 4.72 × 10–5). These tracts are crucial in maintaining the integrity of brain networks. Differential analysis further supported these findings (FWER-corrected p < 0.05). The 1p/19q non-co-deletion group exhibited significantly higher clustering coefficients (FDR-corrected p < 0.05) and reduced betweenness centrality (FDR-corrected p < 0.05) in regions around the tumor compared to HC group. Graph theoretical analysis indicated that non-co-deletion patients had increased local clustering and decreased betweenness centrality in peritumoral brain regions compared to co-deletion patients and healthy controls (FDR-corrected p < 0.05). Additionally, despite not being significant through correction, patients with 1p/19q co-deletion exhibited lower trends in weighted average clustering coefficient, transitivity, small worldness, and global efficiency, while showing higher tendencies in weighted path length compared to patients without the co-deletion.ConclusionThe findings of this study underline the significant role of 1p/19q co-deletion in altering structural connectivity in insular glioma patients. These alterations in brain networks could have profound implications for the neural functionality in patients with dominant hemisphere insular gliomas.
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- 2024
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15. Identification of mitochondria-related gene biomarkers associated with immune infiltration in acute myocardial infarction
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Guoqing Liu, Min Wang, Xiangwen Lv, Yuting Guan, Jingqi Li, and Jian Xie
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Bioinformatics ,Cardiovascular medicine ,Clinical genetics ,Science - Abstract
Summary: Mitochondrial dysfunction has been known to contribute to the worsening of acute myocardial infarction (AMI). We screened differentially expressed genes (DEGs) between AMI and healthy individuals based on the GSE66360 dataset. We took the intersection of the obtained DEGs with 1,136 mitochondria-related genes. Finally, we screened out mitochondria-related DEGs (MitoDEGs). Eight MitoDEGs were identified as hub genes based on the random forest algorithm. Two mitochondria-related robust molecular clusters were identified by consensus clustering. Immune infiltration analysis showed that immune cell infiltration was significantly increased in the high-expression group of MitoDEGs. We obtained the potential drugs targeted at ALDH2, PMAIP1, and BCL2A1, such as disulfiram, obatoclax mesylate, and bortezomib. Quantitative reverse-transcription polymerase chain reaction further validated the expression of the MitoDEGs in the cell model of AMI. These findings reveal the potential role of MitoDEGs in AMI and provide new insights into risk stratification and individualized treatment of AMI patients.
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- 2024
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16. Survival outcome and predictors of WHO grade 2 and 3 insular gliomas: A classification based on the tumor spread
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Bowen Xue, Zonggang Hou, Zhenghai Deng, Shengjun Sun, Chuanhao Zhang, Yuesong Pan, Yazhuo Zhang, Zhenye Li, and Jian Xie
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classification ,insular glioma ,limbic system ,oncology ,paralimbic system ,survival analysis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Objective The study aimed to identify if clinical features and survival outcomes of insular glioma patients are associated with our classification based on the tumor spread. Methods Our study included 283 consecutive patients diagnosed with histological grade 2 and 3 insular gliomas. A new classification was proposed, and tumors restricted to the paralimbic system were defined as type 1. When tumors invaded the limbic system (referred to as the hippocampus and its surrounding structures in this study) simultaneously, they were defined as type 2. Tumors with additional internal capsule involvement were defined as type 3. Results Tumors defined as type 3 had a higher age at diagnosis (p = 0.002) and a higher preoperative volume (p
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- 2024
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17. Effect of Chinese Milk Vetch on Zinc Content and Zinc Absorption of Rice in Purple Tidal Mud Soil
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Zengping Yang, Zhongxiu Rao, Hailu Li, Zedong Long, Xianjun Zeng, and Jian Xie
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Chinese milk vetch ,purple tidal mud substrate ,rice yield ,rice zinc ,zinc absorption ,Agriculture - Abstract
Rice is a staple food crop that feeds billions globally. Addressing Zn deficiency in rice is crucial for improving nutrition and food security. Zn deficiency in rice is a widespread issue, especially in purple tidal mud substrates, which often exhibit low Zn availability. The objective of this two-year pot study was to explore the relationship between Zn content, yield components, and Zn absorption in rice grown in purple tidal mud substrate with varying amounts of Chinese milk vetch (Astragalus sinicus L.) incorporation. The experimental design consisted of seven treatments: an unfertilized control, a Chinese milk vetch control, a chemical fertilizer control, and four treatment variations incorporating Chinese milk vetch alongside chemical fertilizer applications. The results indicated that planting and applying Chinese milk vetch improved the grain yield of rice in purple tidal mud substrate, and the yield increased with higher levels of Chinese milk vetch applied. The increased grain yield resulted in higher Zn absorption in rice grains. The application of Chinese milk vetch, both solely and in combination with chemical fertilizers, had varying effects on zinc uptake and grain zinc formation efficiency in early and late rice, with the control and low-level Chinese milk vetch treatments generally exhibiting the highest performance across the two-year period. By introducing Chinese milkvetch following the use of chemical fertilizers, the Zn content in rice grains increased starting from the second year. The treatment with Chinese milkvetch applied at a rate of 2.25 t/hm2 showed the best results in increasing the Zn content in rice grains. The increase in Zn content and Zn uptake by the rice plants gave rise to a lowering of the DTPA-extractable Zn content in the purple tidal mud substrate. Sole Chinese milk vetch application and using Chinese milk vetch following chemical fertilizer application both increased Zn content extracted by DTPA in purple tidal mud substrate.
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- 2024
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18. Research on Safety Risk Evaluation System for Seepage in Ship Lock Foundation Pit Engineering
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Jianhong Huang, Jian Xie, and Honglei Ren
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ship lock engineering ,foundation pit ,risk assessment ,finite element method (FEM) ,evaluation index system ,seepage safety ,Building construction ,TH1-9745 - Abstract
Ship lock project currently demonstrates a distinct cyclical pattern, accumulating latent hazards that pose a significant threat to project safety. Seepage safety (the condition in which the seepage risk is reduced to an acceptable level) serves as a crucial indicator in the safety risk assessment index system for ship lock project construction, thus necessitating an in-depth analysis of the risk factors impacting seepage safety. Utilizing a ship lock project in China as a case study, this study employs the finite element method (FEM) to analyze the seepage field of the ship lock foundation pit basin and proposes a comprehensive set of methods for risk evaluation and warning models pertaining to seepage safety risks in ship lock engineering. This study reveals that the obstruction of dewatering wells and imperfections in the diaphragm wall are the primary factors contributing to seepage damage. The investigation conducted a quantitative analysis of the impact of these two factors on the seepage field of the ship lock pit, considering pore pressure, water head, gradient, and flow velocity. A comprehensive set of evaluation indicators for seepage safety was formulated, drawing on the principles of multi-objective optimization, and a method for delineating the safe range of ship lock pit excavation under seepage action was proposed. Subsequently, an integrated seepage safety risk assessment system for ship lock pit excavation engineering was established. These research findings offer a scientific foundation for the management of seepage safety in ship lock pit excavation engineering and provide valuable references and guidance for the development of anti-seepage systems.
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- 2024
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19. USP22 as a key regulator of glycolysis pathway in osteosarcoma: insights from bioinformatics and experimental approaches
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Qiao Zhang, Jinwei Zhu, Jian Xie, Yurong Gu, and Lu Chen
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Ubiquitin-specific processing peptidase 22 (USP22) ,Osteosarcoma ,Glycolysis ,Bioinformatics ,Experimental validation ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background Osteosarcoma is the most common primary malignant bone tumor, but its pathogenesis remains unclear. Ubiquitin-specific processing peptidase 22 (USP22) is reported to be highly expressed and associated with tumor malignancy and prognosis in cancers. However, the role and mechanism of USP22 in osteosarcoma is not fully understood. This study aims to investigate the function and potential mechanism of USP22 in osteosarcoma using bioinformatics analysis combined with experimental validation. Methods We first integrated transcriptomic datasets and clinical information of osteosarcoma from GEO and TCGA databases to assess the expression and prognostic value of USP22 in osteosarcoma. Then, differential expression analysis and weighted gene co-expression network analysis (WGCNA) were conducted to identify USP22-related co-expressed genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed to explore the biological functions and signaling pathways of USP22 co-expressed genes. To validate the accuracy of bioinformatics analyses, we downregulated USP22 expression in osteosarcoma cell line Sao-2 using siRNA and assessed its effect on cell proliferation, migration, invasion, apoptosis, and regulation of key signaling pathways. Results We found that USP22 was highly expressed in osteosarcoma tissues and correlated with poor prognosis in osteosarcoma patients. USP22 also showed potential as a diagnostic marker for osteosarcoma. In addition, 344 USP22-related co-expressed genes were identified, mainly involved in signaling pathways such as glycolysis, oxidative phosphorylation, spliceosome, thermogenesis, and cell cycle. The in vitro experiments confirmed the accuracy and reliability of bioinformatics analyses. We found that downregulation of USP22 could inhibit Sao-2 cell proliferation, migration, invasion, and induce apoptosis. Furthermore, downregulation of USP22 significantly reduced aerobic glycolysis levels in Sao-2 cells and inhibited the expression of key enzymes and transporters in aerobic glycolysis pathways such as HK2, PKM2, and GLUT1. Conclusions USP22 plays a critical role in the occurrence, development, and prognosis of osteosarcoma. USP22 could influence Sao-2 cell proliferation, apoptosis, migration, and invasion by regulating the glycolysis pathway, thereby promoting osteosarcoma progression. Therefore, USP22 may be a potential therapeutic target for the treatment of osteosarcoma.
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- 2024
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20. Advancements and challenges in pharmacokinetic and pharmacodynamic research on the traditional Chinese medicine saponins: a comprehensive review
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Yuhan Ma, Yongxia Zhao, Mingxia Luo, Qin Jiang, Sha Liu, Qi Jia, Zhixun Bai, Faming Wu, and Jian Xie
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saponins ,traditional Chinese medicine ,pharmacokinetics ,bioavailability ,influencing factors ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Recent research on traditional Chinese medicine (TCM) saponin pharmacokinetics has revealed transformative breakthroughs and challenges. The multicomponent nature of TCM makes it difficult to select representative indicators for pharmacokinetic studies. The clinical application of saponins is limited by their low bioavailability and short half-life, resulting in fluctuating plasma concentrations. Future directions should focus on novel saponin compounds utilizing colon-specific delivery and osmotic pump systems to enhance oral bioavailability. Optimizing drug combinations, such as ginsenosides with aspirin, shows therapeutic potential. Rigorous clinical validation is essential for practical applications. This review emphasizes a transformative era in saponin research, highlighting the need for clinical validation. TCM saponin pharmacokinetics, guided by traditional principles, are in development, utilizing multidisciplinary approaches for a comprehensive understanding. This research provides a theoretical basis for new clinical drugs and supports rational clinical medication.
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- 2024
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21. Anti-inflammatory and protective effects of Pimpinella candolleana on ulcerative colitis in rats: a comprehensive study of quality, chemical composition, and molecular mechanisms
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Xiaoqi Liu, Hai Xiao, Mingxia Luo, Junpeng Meng, Lin Zhong, Tao Wu, Yongxia Zhao, Faming Wu, and Jian Xie
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Pimpinella candolleana Wight et Arn. ,ulcerative colitis ,quality evaluation ,anti-inflammatory ,molecular mechanism ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Introduction:P. candolleana Wight et Arn. Is a traditional Chinese herbal medicine used by the Gelao nationality in southwest China, has been historically applied to treat various gastrointestinal disorders. Despite its traditional usage, scientific evidence elucidating its efficacy and mechanisms in treating ulcerative colitis (UC) remains sparse. This study aimed to determine the quality and chemical composition of Pimpinella candolleana and to identify its potential therapeutic targets and mechanisms in acetic acid-induced ulcerative colitis (UC) rats through integrated approaches.Methods: Morphological and microscopic characteristics, thin layer chromatography (TLC) identification, and quantitative analysis of P. candolleana were performed. UPLC-Q-TOF-MS, network pharmacology, and molecular docking were used to identify its chemical composition and predict its related targets in UC. Furthermore, a rat model was established to evaluate the therapeutic effect and potential mechanism of P. candolleana on UC.Results: Microscopic identification revealed irregular and radial arrangement of the xylem in P. candolleana, with a light green cross-section and large medullary cells. UPLC-Q-TOF-MS analysis detected and analyzed 570 metabolites, including flavonoids, coumarins, and terpenoids. Network pharmacology identified 12 effective components and 176 target genes, with 96 common targets for P. candolleana-UC, including quercetin, luteolin, and nobiletin as key anti-inflammatory components. GO and KEGG revealed the potential involvement of their targets in RELA, JUN, TNF, IKBKB, PTGS2, and CHUK, with action pathways such as PI3K-Akt, TNF, IL-17, and apoptosis. Molecular docking demonstrated strong affinity and binding between these key components (quercetin, luteolin, and nobiletin) and the key targets of the pathway, including JUN and TNF. Treatment with P. candolleana improved body weight loss, the disease activity index, and colonic histological damage in UC rats. Pimpinella candolleana also modulated the levels of IL-2 and IL-6 in UC rats, reduced the expression of pro-inflammatory cytokines such as IL-6, MAPK8, TNF-α, CHUK, and IKBKB mRNA, and decreased the expression of TNF, IKBKB, JUN, and CHUK proteins in the colon of UC rats, thereby reducing inflammation and alleviating UC symptoms.Conclusion:P. candolleana exerts its protective effect on UC by reducing the expression of proinflammatory cytokines and inhibiting inflammation, providing scientific evidence for its traditional use in treating gastrointestinal diseases. This study highlights the potential of P. candolleana as a natural therapeutic agent for UC and contributes to the development of novel medicines for UC treatment.
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- 2024
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22. Extracellular Vesicles Obtained From Lung Adenocarcinoma Cells Cultured Under Intermittent Hypoxia Induce M2 Macrophage Polarization via miR-20a-5p Delivery
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Yuanling Liu MD, Minzhen Lu MSc, Feng Liu PhD, Gang Xu PhD, Congrui Feng MSc, Yuluo Chen MSc, Danyan Cai MSc, Huake Sun MSc, Yanjun Zeng MD, Jian Xie MSc, Wei Ma PhD, and Xinglin Gao PhD
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction: Intermittent hypoxia (IH), an important feature of obstructive sleep apnea, enhances the function of lung cancer cell-derived extracellular vesicles (EVs) to exacerbate the immunosuppressive properties of macrophages. Herein, we investigated the effects of EVs obtained from lung adenocarcinoma cells cultured under IH on macrophage polarization. Methods: The M1-type and M2-type tumor-associated macrophages (TAMs) in tissues from lung adenocarcinoma cases with (n = 10) or without (n = 12) OSA were assessed by immunohistochemical studies. EVs obtained from A549 cells grown under normoxia (EV-NA) or IH (EV-IH) were isolated and cocultured with macrophages. MicroRNA sequencing was used to determine discrepant miRNAs in EVs, selecting miR-20a-5p for subsequent experiments. Next, reverse transcription-quantitative polymerase chain reaction, flow cytometry, luciferase reporter assay, western blotting assay, and gain- and loss-of-function assays were used to explore the mechanism by which miR-20a-5p promotes M2 macrophage polarization by targeting phosphatase and Tensin homolog gene (PTEN). Results: Stromal M2 TAMs were highly abundant in patients with lung adenocarcinoma and obstructive sleep apnea. Macrophages treated with EV-IH that highly expressed miR-20a-5p showed the M2 phenotype. Luciferase reporter assay confirmed PTEN as a target of miR-20a-5p. Transfection of miR-20a-5p mimics decreased PTEN expression, upregulated M2 polarization markers, and promoted Akt phosphorylation in macrophages, while transfection with a miR-20a-5p inhibitor had the opposite effects. Furthermore, miR-20a-5p inhibition in macrophages eliminated the PTEN downregulation, Akt phosphorylation, and upregulation of M2 polarization markers induced by EV-IH transfection. Conclusion: These findings indicate that EVs obtained from lung adenocarcinoma cells cultured under IH deliver miR-20a-5p to promote M2 macrophage polarization by targeting PTEN.
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- 2024
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23. Stabilization of P2-type cathode at 4.5 V by 'La pillar' in Na layer with a La–O orbital hybridization for long-life and high-energy-density Na-ion batteries
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Yinda Li, Zilong Wang, Yuxuan Wu, Dingan Cai, Jian Xie, Bo Xu, Aijun Zhou, Shuangyu Liu, Xiongwen Xu, Jian Tu, and Yunhao Lu
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Na-ion battery ,P2 type ,Cathode material ,La doping ,High voltage ,Technology - Abstract
P2-type layered oxide cathodes suffer from poor capacity retention and detrimental phase transitions at high voltage due to the presence of Na vacancies. During deep desodiation, irreversible lattice oxygen release increases capacity but also accelerates lattice collapse. In this work, to address the capacity limitations of the P2-type layered oxide cathode and leverage its structural stability, we develop a high-voltage P2-type layered oxide cathode, Na0.84La0.01Li0.12Ni0.22Mn0.66O2 (P2-NLLNMO). The La-doped material exhibits less volume variation (1.8%) and more stable crystal structure over a wide voltage window of 2.0–4.5 V. P2-NLLNMO yields a high capacity of 136.6 mAh g–1 and excellent cycling stability (89.2% retention after 200 cycles at 0.5 C) with a cutoff voltage 4.5 V. In addition, we reveal that La–O orbital hybridization is important for the enhanced performance when La atoms are doped in Na layers of P2-NLLNMO. This discovery provides valuable insights and guidance for the design of P2-type cathodes in high-energy-density sodium-ion batteries.
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- 2024
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24. Ferroptosis in cardiovascular disease
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Guoqing Liu, Xiaoyong Xie, Wang Liao, Siyuan Chen, Rumao Zhong, Jiahui Qin, Peichun He, and Jian Xie
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Ferroptosis ,Cardiovascular disease ,Abnormal iron metabolism ,Lipid peroxidation ,Treatment strategies ,Therapeutics. Pharmacology ,RM1-950 - Abstract
In the 21st century, cardiovascular disease (CVD) has become one of the leading causes of death worldwide. The prevention and treatment of CVD remain pressing scientific issues. Several recent studies have suggested that ferroptosis may play a key role in CVD. Most studies conducted thus far on ferroptosis and CVD have supported the link. Ferroptosis mediated by different signaling and metabolic pathways can lead to ischemic heart disease, myocarditis, heart failure, ischemia-reperfusion injury, and cardiomyopathy. Still, the specific mechanism of ferroptosis in CVD, the particular organ areas affected, and the stage of disease involved need to be further studied. Therefore, understanding the mechanisms regulating ferroptosis in CVD may improve disease management. Throughout this review, we summarized the mechanism of ferroptosis and its effect on the pathogenesis of CVD. We also predicted and discussed future research directions, aiming to provide new ideas and strategies for preventing and treating CVD.
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- 2024
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25. Effects of Returning Green Manure-Chinese Milk Vetch on the Availability and Transformation of Zinc in Purple Tidal Mud Soil under Rice Cultivation
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Zengping Yang, Zhongxiu Rao, Hailu Li, Xianjun Zeng, and Jian Xie
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Chinese milk vetch ,purple tidal mud ,zinc availability ,zinc form transformation ,rice cultivation ,Agriculture - Abstract
This study aimed to investigate the impact of different levels of Chinese milk vetch (Astragalus sinicus L.) incorporation on the availability and transformation of zinc in purple tidal mud soil under rice cultivation. A two-year pot experiment was conducted, comprising seven treatments: a control group without fertilizer, a control group with Chinese milk vetch application, a control group with chemical fertilizer application, and four treatment groups with varying levels of Chinese milk vetch application following chemical fertilizer application. Results showed that Chinese milk vetch application increased the content of available zinc (DTPA-Zn) in purple tidal mud soil. Sole application of Chinese milk vetch ultimately enhanced the transfer factor of zinc in purple tidal mud soil and reduced the distribution index. However, applying Chinese milk vetch after chemical fertilizer application ultimately decreased the transfer factor of zinc and increased the distribution index. Furthermore, sole application of Chinese milk vetch facilitated the conversion of zinc in purple tidal mud soil into available forms, while applying it after chemical fertilizer application promoted the transformation of zinc into ineffective forms, with a greater conversion observed at higher levels of Chinese milk vetch application.
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- 2024
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26. Empowering Biomedical Named Entity Recognition through Multi-Tagger Collaboration.
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Jin Zhao 0004, Jian Xie, Tinghui Zhu, Qian Guo, Zhixu Li, and Yanghua Xiao
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- 2024
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27. TravelPlanner: A Benchmark for Real-World Planning with Language Agents.
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Jian Xie, Kai Zhang 0033, Jiangjie Chen, Tinghui Zhu, Renze Lou, Yuandong Tian, Yanghua Xiao, and Yu Su 0001
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- 2024
28. MUFFIN: Curating Multi-Faceted Instructions for Improving Instruction Following.
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Renze Lou, Kai Zhang 0033, Jian Xie, Yuxuan Sun, Janice Ahn, Hanzi Xu, Yu Su 0001, and Wenpeng Yin 0001
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- 2024
29. Adaptive Chameleon or Stubborn Sloth: Revealing the Behavior of Large Language Models in Knowledge Conflicts.
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Jian Xie, Kai Zhang 0033, Jiangjie Chen, Renze Lou, and Yu Su 0001
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- 2024
30. The Utility of Motor Evoked Potential Monitoring for Predicting Postoperative Motor Deficit in Patients With Insular Gliomas.
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Xing Fan, Hao You, Jiajia Liu, Xiaorong Tao, Mingran Wang, Ke Li, Jun Yang, Jian Xie, and Hui Qiao
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- 2024
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31. Materials and Structures in Cold Regions : The Impact of Low Temperatures on Construction Materials and the Structural Behaviour of Structural Members
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Jia-Bao Yan, Jian Xie, Jia-Bao Yan, and Jian Xie
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- Materials at low temperatures
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Materials and Structures in Cold Regions: The Impact of Low Temperatures on Construction Materials and the Structural Behaviour of Structural Members is based on the latest research undertaken at Tianjin University, P.R. China and National University of Singapore. The book provides detailed experimental research on the influences of low temperatures on the mechanical properties of constructional materials and structural behavior of typical structural members at low temperatures, e.g., beams, columns, and walls. The theoretical and numerical models in the book on structural members at low temperatures simplifies and provides guidelines for structural engineers working on cold-region projects.The book blends the fundamental development of concepts with the practical specification of materials and structures at low temperatures. - Provides detailed experimental research on the influence of low temperatures on the mechanical properties of constructional materials, and structural behavior of typical structural members at low temperatures, e.g., beams, columns, and walls - Covers fundamental development of concepts, with the practical specification of materials and structures at low temperatures - Presents the latest research, undertaken at Tianjin University, P.R. China and the National University of Singapore, Singapore
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- 2024
32. Effects of climate warming and declining water quality on the eco-environmental evolution of Jinmucuo Lake: Evidence from sedimentary diatom assemblages
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Yu-rong Li, Yang Wang, Chun Ye, Zi-jian Xie, Chun-hua Li, and Wei-wei Wei
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Diatom assemblage ,Climate change ,As pollution ,Sediment core ,Lake ecological degradation ,Tibetan plateau ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
The problem of lake pollution on the Tibetan Plateau has become prominent in recent years because of the warming climate and increased human activity. However, it is difficult to obtain effective indicators to explain the long-term eco-environmental changes in plateau lakes. In this study, a sediment core from Jinmucuo Lake was taken as the research object, and the 210Pb and 137Cs isotopes, diatom assemblages, and climatic and environmental factors were analyzed. The results revealed that the lake had a sedimentation rate of 0.47 cm/a, and the age of the 30-cm sediment core was approximately 1876 AD. Diatom abundances at different ages tend to decrease. During 1876–1999, abundant diatom species, such as Cymbella lanceolata, Navicula sp., Surirella ovalis, Synedra sp., Epithemia adnata, Cymbella pusilla, Amphora ovalis and Tabularia tabulata, which included oligotrophic, mesotrophic, and eutrophic indicator species were detected, and the dominant species were Cymbella lanceolata, Navicula sp., Surirella ovalis and Synedra sp. After 2000, diatoms declined dramatically, and were undetected in most samples. Similarly, the species richness and Shannon‒Wiener index plummeted to 0 in approximately 2002. Canonical correspondence analysis revealed that total nitrogen and organic matter were the main influencing factors of diatom assemblages before 2000, whereas As and mean annual temperature were the main influencing factors after 2000. These findings indicate that diatom habitats have been rapidly destroyed by increasing temperatures and As inputs, even in the presence of abundant nutrients in the lake.
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- 2024
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