14 results on '"Jakobs S"'
Search Results
2. Decisive role of mDia-family formins in cell cortex function of highly adherent cells.
- Author
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Scholz J, Stephan T, Pérez AG, Csiszár A, Hersch N, Fischer LS, Brühmann S, Körber S, Litschko C, Mijanovic L, Kaufmann T, Lange F, Springer R, Pich A, Jakobs S, Peckham M, Tarantola M, Grashoff C, Merkel R, and Faix J
- Subjects
- Animals, Mice, Actin Cytoskeleton metabolism, Focal Adhesions metabolism, Stress Fibers metabolism, Mechanotransduction, Cellular, Pseudopodia metabolism, Humans, Formins metabolism, Cell Adhesion, Cell Movement, Fibroblasts metabolism, Fibroblasts cytology
- Abstract
Cortical formins, pivotal for the assembly of linear actin filaments beneath the membrane, exert only minor effects on unconfined cell migration of weakly and moderately adherent cells. However, their impact on migration and mechanostability of highly adherent cells remains poorly understood. Here, we demonstrate that loss of cortical actin filaments generated by the formins mDia1 and mDia3 drastically compromises cell migration and mechanics in highly adherent fibroblasts. Biophysical analysis of the mechanical properties of the mutant cells revealed a markedly softened cell cortex in the poorly adherent state. Unexpectedly, in the highly adherent state, associated with a hyperstretched morphology with exaggerated focal adhesions and prominent high-strain stress fibers, they exhibited even higher cortical tension compared to control. Notably, misguidance of intracellular forces, frequently accompanied by stress-fiber rupture, culminated in the formation of tension- and contractility-induced macroapertures, which was instantly followed by excessive lamellipodial protrusion at the periphery, providing critical insights into mechanotransduction of mechanically stressed and highly adherent cells.
- Published
- 2024
- Full Text
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3. Direct optical measurement of intramolecular distances with angstrom precision.
- Author
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Sahl SJ, Matthias J, Inamdar K, Weber M, Khan TA, Brüser C, Jakobs S, Becker S, Griesinger C, Broichhagen J, and Hell SW
- Subjects
- Humans, Fluorescence Resonance Energy Transfer methods, Histidine Kinase chemistry, Peptides chemistry, Protein Domains, Protein Multimerization, Protein Subunits chemistry, Microscopy, Fluorescence methods, Proteins chemistry, Proteins metabolism
- Abstract
Optical investigations of nanometer distances between proteins, their subunits, or other biomolecules have been the exclusive prerogative of Förster resonance energy transfer (FRET) microscopy for decades. In this work, we show that MINFLUX fluorescence nanoscopy measures intramolecular distances down to 1 nanometer-and in planar projections down to 1 angstrom-directly, linearly, and with angstrom precision. Our method was validated by quantifying well-characterized 1- to 10-nanometer distances in polypeptides and proteins. Moreover, we visualized the orientations of immunoglobulin subunits, applied the method in human cells, and revealed specific configurations of a histidine kinase PAS domain dimer. Our results open the door for examining proximities and interactions by direct position measurements at the intramacromolecular scale.
- Published
- 2024
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4. The synaptic vesicle cluster as a controller of pre- and postsynaptic structure and function.
- Author
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Reshetniak S, Bogaciu CA, Bonn S, Brose N, Cooper BH, D'Este E, Fauth M, Fernández-Busnadiego R, Fiosins M, Fischer A, Georgiev SV, Jakobs S, Klumpp S, Köster S, Lange F, Lipstein N, Macarrón-Palacios V, Milovanovic D, Moser T, Müller M, Opazo F, Outeiro TF, Pape C, Priesemann V, Rehling P, Salditt T, Schlüter O, Simeth N, Steinem C, Tchumatchenko T, Tetzlaff C, Tirard M, Urlaub H, Wichmann C, Wolf F, and Rizzoli SO
- Abstract
The synaptic vesicle cluster (SVC) is an essential component of chemical synapses, which provides neurotransmitter-loaded vesicles during synaptic activity, at the same time as also controlling the local concentrations of numerous exo- and endocytosis cofactors. In addition, the SVC hosts molecules that participate in other aspects of synaptic function, from cytoskeletal components to adhesion proteins, and affects the location and function of organelles such as mitochondria and the endoplasmic reticulum. We argue here that these features extend the functional involvement of the SVC in synapse formation, signalling and plasticity, as well as synapse stabilization and metabolism. We also propose that changes in the size of the SVC coalesce with changes in the postsynaptic compartment, supporting the interplay between pre- and postsynaptic dynamics. Thereby, the SVC could be seen as an 'all-in-one' regulator of synaptic structure and function, which should be investigated in more detail, to reveal molecular mechanisms that control synaptic function and heterogeneity., (© 2024 The Author(s). The Journal of Physiology published by John Wiley & Sons Ltd on behalf of The Physiological Society.)
- Published
- 2024
- Full Text
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5. MultiMatch: geometry-informed colocalization in multi-color super-resolution microscopy.
- Author
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Naas J, Nies G, Li H, Stoldt S, Schmitzer B, Jakobs S, and Munk A
- Subjects
- Microscopy, Fluorescence methods, Color, Algorithms, DNA chemistry, DNA metabolism, Microscopy methods, Software, Image Processing, Computer-Assisted methods
- Abstract
With recent advances in multi-color super-resolution light microscopy, it is possible to simultaneously visualize multiple subunits within biological structures at nanometer resolution. To optimally evaluate and interpret spatial proximity of stainings on such an image, colocalization analysis tools have to be able to integrate prior knowledge on the local geometry of the recorded biological complex. We present MultiMatch to analyze the abundance and location of chain-like particle arrangements in multi-color microscopy based on multi-marginal optimal unbalanced transport methodology. Our object-based colocalization model statistically addresses the effect of incomplete labeling efficiencies enabling inference on existent, but not fully observable particle chains. We showcase that MultiMatch is able to consistently recover existing chain structures in three-color STED images of DNA origami nanorulers and outperforms geometry-uninformed triplet colocalization methods in this task. MultiMatch generalizes to an arbitrary number of color channels and is provided as a user-friendly Python package comprising colocalization visualizations., (© 2024. The Author(s).)
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- 2024
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6. Visualizing mitochondrial dynamics at the nanoscale.
- Author
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Stephan T, Ilgen P, and Jakobs S
- Abstract
The study of mitochondria is a formidable challenge for super-resolution microscopy due to their dynamic nature and complex membrane architecture. In this issue, Ren et al. introduce HBmito Crimson, a fluorogenic and photostable mitochondrial probe for STED microscopy and investigate how mitochondrial dynamics influence the spatial organization of mitochondrial DNA., (© 2024. The Author(s).)
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- 2024
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7. Defective mitochondrial COX1 translation due to loss of COX14 function triggers ROS-induced inflammation in mouse liver.
- Author
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Aich A, Boshnakovska A, Witte S, Gall T, Unthan-Fechner K, Yousefi R, Chowdhury A, Dahal D, Methi A, Kaufmann S, Silbern I, Prochazka J, Nichtova Z, Palkova M, Raishbrook M, Koubkova G, Sedlacek R, Tröder SE, Zevnik B, Riedel D, Michanski S, Möbius W, Ströbel P, Lüchtenborg C, Giavalisco P, Urlaub H, Fischer A, Brügger B, Jakobs S, and Rehling P
- Subjects
- Animals, Female, Humans, Male, Mice, DEAD Box Protein 58, DEAD-box RNA Helicases metabolism, DEAD-box RNA Helicases genetics, Membrane Proteins, Mice, Inbred C57BL, Mitochondria metabolism, Mitochondrial Proteins metabolism, Mitochondrial Proteins genetics, Mutation, Protein Biosynthesis, RNA, Mitochondrial genetics, RNA, Mitochondrial metabolism, Cyclooxygenase 1, Electron Transport Complex IV metabolism, Electron Transport Complex IV genetics, Inflammation metabolism, Inflammation genetics, Inflammation pathology, Liver metabolism, Liver pathology, Oxidative Phosphorylation, Reactive Oxygen Species metabolism
- Abstract
Mitochondrial oxidative phosphorylation (OXPHOS) fuels cellular ATP demands. OXPHOS defects lead to severe human disorders with unexplained tissue specific pathologies. Mitochondrial gene expression is essential for OXPHOS biogenesis since core subunits of the complexes are mitochondrial-encoded. COX14 is required for translation of COX1, the central mitochondrial-encoded subunit of complex IV. Here we describe a COX14 mutant mouse corresponding to a patient with complex IV deficiency. COX14
M19I mice display broad tissue-specific pathologies. A hallmark phenotype is severe liver inflammation linked to release of mitochondrial RNA into the cytosol sensed by RIG-1 pathway. We find that mitochondrial RNA release is triggered by increased reactive oxygen species production in the deficiency of complex IV. Additionally, we describe a COA3Y72C mouse, affected in an assembly factor that cooperates with COX14 in early COX1 biogenesis, which displays a similar yet milder inflammatory phenotype. Our study provides insight into a link between defective mitochondrial gene expression and tissue-specific inflammation., (© 2024. The Author(s).)- Published
- 2024
- Full Text
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8. Thulium laser extraction of angioembolization coils in patient presenting with nephrolithiasis: A case report.
- Author
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Jakobs S and Stanley D
- Abstract
Renal Artery Embolization (RAE) is a first-line treatment for arteriovenous fistula complications, which may occur following percutaneous nephrolithotomy (PCNL). A rare complication of RAE is metal coil migration, which may present with nephrolithiasis symptoms, including hematuria and flank pain. Imaging like Computed Tomography (CT) Angiography can help assess the risk of hemorrhage due to coil location relative to vasculature . Subsequently, ureteroscopy can be done with thulium laser excision of the coils and lithotripsy of adherent stone. This case is one of the first to demonstrate that endourological thulium laser excision is a safe and effective management for migrated angioembolization coils., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
- Published
- 2024
- Full Text
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9. Prevalence and radiological definitions of acetabular dysplasia after the age of 2 years: a systematic review.
- Author
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de Vos-Jakobs S, Boel F, Bramer WM, Bierma-Zeinstra SMA, and Agricola R
- Subjects
- Humans, Prevalence, Child, Child, Preschool, Adolescent, Developmental Dysplasia of the Hip diagnostic imaging, Developmental Dysplasia of the Hip epidemiology, Acetabulum diagnostic imaging, Acetabulum abnormalities, Radiography methods
- Abstract
Acetabular dysplasia is one of the most common causes of early hip osteoarthritis and hip replacement surgery. Recent literature suggests that acetabular dysplasia does not always originate at infancy, but can also develop later during childhood. This systematic review aims to appraise the literature on prevalence numbers of acetabular dysplasia in children after the age of 2 years. A systematic search was performed in several scientific databases. Publications were considered eligible for inclusion if they presented prevalence numbers on acetabular dysplasia in a general population of healthy children aged 2-18 years with description of the radiological examination. Quality assessment was done using the Newcastle-Ottawa score. Acetabular dysplasia was defined mild when: the center-edge angle of Wiberg (CEA-W) measured 15-20°, the CEA-W ranged between -1 to -2SD for age, or based on the acetabular index using thresholds from the Tönnis table. Severe dysplasia was defined by a CEA-W < 15°, <-2SD for age, or acetabular index according to Tönnis. Of the 1837 screened articles, four were included for review. Depending on radiological measurement, age and reference values used, prevalence numbers for mild acetabular dysplasia vary from 13.4 to 25.6% and for severe acetabular dysplasia from 2.2 to 10.9%. Limited literature is available on prevalence of acetabular dysplasia in children after the age of 2 years. Prevalence numbers suggest that acetabular dysplasia is not only a condition in infants but also highly prevalent later in childhood., (Copyright © 2023 The Author(s). Published by Wolters Kluwer Health, Inc.)
- Published
- 2024
- Full Text
- View/download PDF
10. 3D Computational Modeling of Defective Early Endosome Distribution in Human iPSC-Based Cardiomyopathy Models.
- Author
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Saleem HN, Ignatyeva N, Stuut C, Jakobs S, Habeck M, and Ebert A
- Subjects
- Humans, Endocytosis, Mutation genetics, Computer Simulation, rhoA GTP-Binding Protein metabolism, Cardiomyopathies metabolism, Cardiomyopathies pathology, Imaging, Three-Dimensional, Cardiomyopathy, Dilated metabolism, Cardiomyopathy, Dilated pathology, Models, Biological, Tropomyosin metabolism, Tropomyosin genetics, Induced Pluripotent Stem Cells metabolism, Endosomes metabolism, Myocytes, Cardiac metabolism, Myocytes, Cardiac pathology
- Abstract
Intracellular cargo delivery via distinct transport routes relies on vesicle carriers. A key trafficking route distributes cargo taken up by clathrin-mediated endocytosis (CME) via early endosomes. The highly dynamic nature of the endosome network presents a challenge for its quantitative analysis, and theoretical modelling approaches can assist in elucidating the organization of the endosome trafficking system. Here, we introduce a new computational modelling approach for assessment of endosome distributions. We employed a model of induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) with inherited mutations causing dilated cardiomyopathy (DCM). In this model, vesicle distribution is defective due to impaired CME-dependent signaling, resulting in plasma membrane-localized early endosomes. We recapitulated this in iPSC-CMs carrying two different mutations, TPM1-L185F and TnT-R141W (MUT), using 3D confocal imaging as well as super-resolution STED microscopy. We computed scaled distance distributions of EEA1-positive vesicles based on a spherical approximation of the cell. Employing this approach, 3D spherical modelling identified a bi-modal segregation of early endosome populations in MUT iPSC-CMs, compared to WT controls. Moreover, spherical modelling confirmed reversion of the bi-modal vesicle localization in RhoA II-treated MUT iPSC-CMs. This reflects restored, homogeneous distribution of early endosomes within MUT iPSC-CMs following rescue of CME-dependent signaling via RhoA II-dependent RhoA activation. Overall, our approach enables assessment of early endosome distribution in cell-based disease models. This new method may provide further insight into the dynamics of endosome networks in different physiological scenarios., Competing Interests: The authors declare no conflicts of interest.
- Published
- 2024
- Full Text
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11. An aldehyde-crosslinking mitochondrial probe for STED imaging in fixed cells.
- Author
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Chen J, Stephan T, Gaedke F, Liu T, Li Y, Schauss A, Chen P, Wulff V, Jakobs S, Jüngst C, and Chen Z
- Subjects
- Humans, HeLa Cells, Cross-Linking Reagents chemistry, Animals, Mitochondrial Membranes metabolism, Mitochondria metabolism, Fluorescent Dyes chemistry, Aldehydes metabolism, Aldehydes chemistry, Microscopy, Fluorescence methods
- Abstract
Fluorescence labeling of chemically fixed specimens, especially immunolabeling, plays a vital role in super-resolution imaging as it offers a convenient way to visualize cellular structures like mitochondria or the distribution of biomolecules with high detail. Despite the development of various distinct probes that enable super-resolved stimulated emission depletion (STED) imaging of mitochondria in live cells, most of these membrane-potential-dependent fluorophores cannot be retained well in mitochondria after chemical fixation. This lack of suitable mitochondrial probes has limited STED imaging of mitochondria to live cell samples. In this study, we introduce a mitochondria-specific probe, PK Mito Orange FX (PKMO FX), which features a fixation-driven cross-linking motif and accumulates in the mitochondrial inner membrane. It exhibits high fluorescence retention after chemical fixation and efficient depletion at 775 nm, enabling nanoscopic imaging both before and after aldehyde fixation. We demonstrate the compatibility of this probe with conventional immunolabeling and other strategies commonly used for fluorescence labeling of fixed samples. Moreover, we show that PKMO FX facilitates correlative super-resolution light and electron microscopy, enabling the correlation of multicolor fluorescence images and transmission EM images via the characteristic mitochondrial pattern. Our probe further expands the mitochondrial toolkit for multimodal microscopy at nanometer resolutions., Competing Interests: Competing interests statement:P.C. is a full-time employee of Genvivo Biotech. Z.C. is the founder of Genvivo Biotech. J.C. and Z.C. have submitted a patent application based on the Cy3.5 conjugates described in this work.
- Published
- 2024
- Full Text
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12. Endogenous BAX and BAK form mosaic rings of variable size and composition on apoptotic mitochondria.
- Author
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Schweighofer SV, Jans DC, Keller-Findeisen J, Folmeg A, Ilgen P, Bates M, and Jakobs S
- Subjects
- Animals, Humans, Mice, Mitochondrial Membranes metabolism, Apoptosis, bcl-2 Homologous Antagonist-Killer Protein metabolism, bcl-2 Homologous Antagonist-Killer Protein genetics, bcl-2-Associated X Protein metabolism, bcl-2-Associated X Protein genetics, Mitochondria metabolism
- Abstract
One hallmark of apoptosis is the oligomerization of BAX and BAK to form a pore in the mitochondrial outer membrane, which mediates the release of pro-apoptotic intermembrane space proteins into the cytosol. Cells overexpressing BAX or BAK fusion proteins are a powerful model system to study the dynamics and localization of these proteins in cells. However, it is unclear whether overexpressed BAX and BAK form the same ultrastructural assemblies following the same spatiotemporal hierarchy as endogenously expressed proteins. Combining live- and fixed-cell STED super-resolution microscopy, we show that overexpression of BAK results in novel BAK structures, which are virtually absent in non-overexpressing apoptotic cells. We further demonstrate that in wild type cells, BAK is recruited to apoptotic pores before BAX. Both proteins together form unordered, mosaic rings on apoptotic mitochondria in immortalized cell culture models as well as in human primary cells. In BAX- or BAK- single-knockout cells, the remaining protein is able to form rings independently. The heterogeneous nature of these rings in both wild type as well as single-knockout cells corroborates the toroidal apoptotic pore model., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
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13. Drosophila MIC10b can polymerize into cristae-shaping filaments.
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Stephan T, Stoldt S, Barbot M, Carney TD, Lange F, Bates M, Bou Dib P, Inamdar K, Shcherbata HR, Meinecke M, Riedel D, Dennerlein S, Rehling P, and Jakobs S
- Subjects
- Animals, Drosophila melanogaster, Mitochondrial Membranes, Cytoskeleton, Mitochondria Associated Membranes, Drosophila, Drosophila Proteins genetics
- Abstract
Cristae are invaginations of the mitochondrial inner membrane that are crucial for cellular energy metabolism. The formation of cristae requires the presence of a protein complex known as MICOS, which is conserved across eukaryotic species. One of the subunits of this complex, MIC10, is a transmembrane protein that supports cristae formation by oligomerization. In Drosophila melanogaster , three MIC10-like proteins with different tissue-specific expression patterns exist. We demonstrate that CG41128/MINOS1b/DmMIC10b is the major MIC10 orthologue in flies. Its loss destabilizes MICOS, disturbs cristae architecture, and reduces the life span and fertility of flies. We show that DmMIC10b has a unique ability to polymerize into bundles of filaments, which can remodel mitochondrial crista membranes. The formation of these filaments relies on conserved glycine and cysteine residues, and can be suppressed by the co-expression of other Drosophila MICOS proteins. These findings provide new insights into the regulation of MICOS in flies, and suggest potential mechanisms for the maintenance of mitochondrial ultrastructure., (© 2024 Stephan et al.)
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- 2024
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14. STED super-resolution microscopy of mitochondrial translocases.
- Author
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Schweighofer SV, Inamdar K, Jans DC, and Jakobs S
- Subjects
- Humans, Microscopy, Fluorescence methods, Microscopy, Fluorescence instrumentation, Mitochondrial Membrane Transport Proteins metabolism, Animals, Mitochondria metabolism, Image Processing, Computer-Assisted methods, Mitochondrial Membranes metabolism, Mitochondrial Precursor Protein Import Complex Proteins, DNA, Mitochondrial analysis, DNA, Mitochondrial metabolism
- Abstract
The mitochondrial translocases of the outer membrane (TOM) and of the inner membrane (TIM) act together to facilitate the import of nuclear-encoded proteins across the mitochondrial membranes. Stimulated Emission Depletion (STED) super-resolution microscopy enables the in situ imaging of such complexes in single cells at sub-diffraction resolution. STED microscopy requires only conventional sample preparation techniques and provides super-resolved raw data without the need for further image processing. In this chapter, we provide a detailed example protocol for STED microscopy of TOM20 and mitochondrial DNA in fixed mammalian cells. The protocol includes instructions on sample preparation for immunolabeling, including cell line selection, fixation, permeabilization, blocking, labeling and mounting, but also recommendations for sample and microscope performance evaluation. The protocol is supplemented by considerations on key factors that influence the quality of the final image and also includes some considerations for the analysis of the acquired images. While the protocol described here is aimed at imaging TOM20 and DNA, it contains all the information for an immediate adaptation to other cellular targets., (Copyright © 2024. Published by Elsevier Inc.)
- Published
- 2024
- Full Text
- View/download PDF
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