1. Genetic characterization and phylogenetic analysis of Chikungunya Virus : A case from Jeddah during the COVID-19 Pandemic.
- Author
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Alguridi HI, Zaki EA, Hapuarachchi HC, Almalki SA, Alzahrani AA, Alsalem WS, Alzahrani FA, and Altayb HN
- Abstract
Chikungunya fever is an arboviral disease caused by the Chikungunya virus (CHIKV), which is classified into three genotypes, namely Asian, West African, and East/Central/South African (ECSA). Due to the frequency and severity of CHIKV outbreaks, it is crucial to genetically characterize the virus, especially in non-endemic regions. This report describes a case and genome characterization of CHIKV from a case that was detected in Jeddah (in 2021) during the COVID-19 pandemic. CHIKV was identified in a 32-year-old male patient in Jeddah, originally from India, who presented with fever, myalgia, malaise, and fatigue and was initially suspected of having dengue. The patient had no history of travel in the fortnight prior to his presentation. Treatment included paracetamol, saline, and vitamin C, which is important for the host immune response and detoxification of viral products. The genome of CHIKV was sequenced using various techniques and bioinformatics tools. Amino acid mutations were studied. Phylogenetic analysis showed that the CHIKV strain detected in 2021 was genetically distinct from those reported in 2018. The 2021 virus shared ancestry with CHIKV strains reported in India. This strain possessed E1-K211E, E2-V264A, and E1-I317V mutations. Novel substitutions were identified. The CHIKV re-emergence in 2021 in Jeddah belonged to the Indian subcontinent/Southeast Asia clade of ECSA. More molecular epidemiological information is needed to better understand and evaluate the prevalence of CHIKV in Saudi Arabia., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
- Published
- 2024
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