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Functional traits, which shift as a plant develops from seed to adult and may be phylogenetically conserved, are widely acknowledged to be associated with exotic species invasion. However, existing studies comparing functional traits between native and invasive species often focus on a single ontogenetic stage, yielding mixed results. It remains unclear whether the functional trait differences and their relationship with invasiveness (e.g. range size) of exotic species remain consistent across ontogenetic stages.In this study, we experimentally compared 18 traits across the seed, early growth and adult stages of 127 native and exotic species from 19 families. These species are common and often co‐occur in the subtropical region of China. We also explored the linkage between these traits, alongside their phylogenetic relatedness with native species and exotic species' range size in China.Our results show that only seed mass differed between native and exotic species. Moreover, the compositions of traits across all stages and the entire lifespan were primarily influenced by phylogenetic relatedness rather than geographic origin. Further, the range size of exotic species in China positively correlated with their mean phylogenetic distance to native species, with no association with individual functional traits or functional distinctiveness.Synthesis. Our results emphasize the importance of comparing functional traits across ontogenetic stages between native and exotic species to improve our understanding of the role of functional traits in shaping plant invasion. Our findings also underscore the pivotal role of phylogenetic relatedness in shaping plant functional traits and the distribution of exotic species in their new ranges. [ABSTRACT FROM AUTHOR]

This study focusses on the spectroscopic observation of marbles, rubies and the transition zone between ruby and its hosted marble that may distinguish the origin of ruby. Samples of ruby-bearing marble were obtained from Afghanistan, Myanmar, and Pakistan. Energy-dispersive X-ray fluorescence was used to analyze the chemical compositions. Although the content of other elements in the marble varied with the origin, the Cl content was quite constant. A diagram of the trace elements Fe and Ga was used to determine the origins of the marble-hosted rubies. X-ray diffraction was used to verify the structure phases, where trioctahedral mica, plagioclase, quartz, and alkali feldspar were found in marbles. Ultraviolet–visible spectrophotometry was used for rubies, where a 659 nm fluoresce peak was found in the Myanmar ruby sample, which could make Myanmar ruby redder and more sought after. The bonding of elements and inclusions of the samples were analyzed using Fourier transform infrared spectroscopy, Raman spectroscopy, and photoluminescence. A FTIR peak at 630 cm−1 is found to be useful in judging the temperature of ruby formation. Scanning electron microscopy and energy-dispersive X-ray spectroscopy were used to analyze the variation of the transition zone, which revealed that the boundary was a gradation zone. Concentrations of Al203 increased in this zone, but CaCO3 concentrations decreased. [ABSTRACT FROM AUTHOR]

Identification of the geographic origin of invasive species can be critical to effective management and amelioration of negative impacts in the introduced range. Liriomyza huidobrensis is a polyphagous leafmining fly that is a devastating pest of many vegetable and floriculture crops around the world. Considered native to South and possibly Central America, L. huidobrensis became invasive in the 1980s and has since spread to at least 30 countries on five continents. We used phylogeographic analysis of over 2 kb of mitochondrial cytochrome oxidase I and II sequence data from 403 field‐collected specimens from both native and introduced populations to investigate the geographic origins of invasive L. huidobrensis worldwide. Within South America, there was substantial genetic variation, as well as the strong phylogeographic structure typical of a native range. In contrast, leafminers from the introduced range and Central America all contained little genetic variation and shared the same small set of haplotypes. These haplotypes trace to Peru as the ultimate geographic origin of invasive populations. Central America is rejected as part of the original geographic range of L. huidobrensis. Within Peru, the primary export region of Lima shared an extremely similar pattern of reduced haplotype variation to the invasive populations. An additional 18 specimens collected at US ports of entry did not share the same haplotype profile as contemporary invasive populations, raising perplexing questions on global pathways and establishment success in this species. [ABSTRACT FROM AUTHOR]

Honey's chemical and sensory characteristics depend on several factors, including its botanical and geographic origins. The consumers' increasing interest in monofloral honey and honey with a clear indication of geographic origin make these types of honey susceptible to fraud. The aim was to propose an original chemometric approach for honey's botanical and geographic authentication purposes. The volatile fraction of almost 100 Italian honey samples (4 out of which are from Greece) from different regions and botanical origins was characterized using HS-SPME-GC-MS; the obtained data were combined for the first time with a genetic algorithm to provide a model for the simultaneous authentication of the botanical and geographic origins of the honey samples. A total of 212 volatile compounds were tentatively identified; strawberry tree honeys were those with the greatest total content (i.e., 4829.2 ng/g). A greater variability in the VOCs' content was pointed out for botanical than for geographic origin. The genetic algorithm obtained a 100% correct classification for acacia and eucalyptus honeys, while worst results were achieved for honeydew (75%) and wildflower (60%) honeys; concerning geographic authentication, the best results were for Tuscany (92.7%). The original combination of HS-SPME-GC-MS analysis and a genetic algorithm is therefore proposed as a promising tool for honey authentication purposes. [ABSTRACT FROM AUTHOR]

Genetic, geographic, and climatic factors shape the physicochemical and biochemical properties of coffee (Coffea arabica), which in turn shape its sensory complexity. While research has explored these influences individually, the combined impact on sensory quality remains unclear. This study examines the relationships between coffee growing geographic and climatic conditions, physicochemical properties, biochemical composition, volatile compounds, and sensory attributes in green Arabica beans. Beans from diverse Ethiopian coffee-growing origins were analyzed for their physicochemical characteristics by using official methods in dry matter basis: HPLC for biochemical composition, HS-SPME-GC-MS for volatile compounds, and sensory evaluation by expert cuppers. Results revealed significant variability in key characteristics, including hundred-bean weight (14.53–17.28 g), moisture content (8.5 %–11.87 %), crude fat (10.39 %–16.83 %), pH (4.3–5.41), and titratable acidity (1.93–3.02 mL of NaOH per gram). Biochemical composition also varied, with caffeine (0.88–1.07 g/100 g), chlorogenic acid (3.7–8.2 g/100 g), trigonelline (0.48–2.31 g/100 g), and sucrose (5.8–15.7 g/100 g) differing across regions. Significant correlations emerged between the geographic and climatic conditions, bean properties, and volatile compounds, contributing to sensory notes such as citrus, fruity, floral, mocha, and spicy. Multi-factor analysis explained 60 % of variability, underscoring the impact of geographic and climatic factors on the beans' physicochemical, biochemical, and sensory properties. By linking these variables to coffee quality, this study highlights their role in enhancing traceability, authenticating origin, and preserving the unique qualities of green Arabica beans across regions.

Scientific development provides opportunities to replace many traditional manual methods to achieve more accurate results and higher efficiency. To scientifically ascertain the geographical origin of coffee, this study develops a method for the rapid determination of 16 inorganic elements in coffee using microwave digestion combined with the ICP-MS internal standard method. Principal component analysis (PCA), Fisher discriminant analysis (FDA), and Partial least squares discriminant analysis (PLS-DA) are employed to analyze 40 coffee samples from three production areas of Pu'er, Baoshan, and Wanning. The results show that the linear correlation coefficients of the 16 elements in this method are above 0.999, the detection limits are in the range of 0.0004–0.63 mg/kg, the RSD of the precision experiments are 4.5 %–13.5 %, the recovery rate of the peak experiment is 86.0 %–96.3 % with the RSD of 1.1 %–8.8 %, and the results of the standard substances are within the range of standard values. Using the discriminant analysis of inorganic elements in coffee (FDA and PLS-DA), coffee origin discrimination was realized, and six key elements (Al, Mn, Fe, Cu, Na, and Ba) are identified as effective discriminatory indexes. Accordingly, a coffee origin discrimination model is established, and the overall accuracy discrimination rate of the discrimination model are all more than 90.0 %, and FDA > PLS-DA. The findings indicated that the method has good accuracy and reliability, is suitable for analyzing and determining multiple elements in sample components as targets, and may have a positive impact on the development of related industries.

Abstract Identification of the geographic origin of invasive species can be critical to effective management and amelioration of negative impacts in the introduced range. Liriomyza huidobrensis is a polyphagous leafmining fly that is a devastating pest of many vegetable and floriculture crops around the world. Considered native to South and possibly Central America, L. huidobrensis became invasive in the 1980s and has since spread to at least 30 countries on five continents. We used phylogeographic analysis of over 2 kb of mitochondrial cytochrome oxidase I and II sequence data from 403 field‐collected specimens from both native and introduced populations to investigate the geographic origins of invasive L. huidobrensis worldwide. Within South America, there was substantial genetic variation, as well as the strong phylogeographic structure typical of a native range. In contrast, leafminers from the introduced range and Central America all contained little genetic variation and shared the same small set of haplotypes. These haplotypes trace to Peru as the ultimate geographic origin of invasive populations. Central America is rejected as part of the original geographic range of L. huidobrensis. Within Peru, the primary export region of Lima shared an extremely similar pattern of reduced haplotype variation to the invasive populations. An additional 18 specimens collected at US ports of entry did not share the same haplotype profile as contemporary invasive populations, raising perplexing questions on global pathways and establishment success in this species.

A method was developed to identify and trace the geographic sources of Erigeron breviscapus using high-resolution mass spectrometry and chemometrics. The representative samples were collected from the geographic area of Honghe Dengzhanhua and other areas in Yunnan province and Guizhou province. The data points could be determined well using the PCA and PLS-DA diagram. A total of 46 characteristic compounds were identified from Honghe Dengzhanhua and within Guizhou province, but 37 compounds were different from Honghe Dengzhanhua and other counties in Yunnan province. Two biomarkers were found from three regions. Their structures were inferred as 8-amino-7-oxononanoic acid and 8-hydroxyquinoline, and they had the same molecular composition. This may suggest that a possible synthesis pathway can be proven in the future. [ABSTRACT FROM AUTHOR]

Despite the availability of a vaccine against hepatitis B virus (HBV), this infection still causes public health problems, particularly in susceptible populations. In Portugal, universal free vaccination started in 1994, and most HBV infections are diagnosed in immigrants from high-prevalence countries. Our aim was to assess the pattern of HBV genotypes/subgenotypes in samples collected between 2017 and 2021 from a convenience sample of 70 infected residents in Portugal. The HBV pol/HBsAg region was amplified and sequenced, allowing the analysis of RT sequences submitted to phylogenetic analysis and mutations assessment. A total of 37.1% of samples were from native Portuguese, aged 25–53 years (mean: 36.7 years), and the remaining samples were from individuals born outside of Portugal. A high diversity of HBV was identified: subgenotypes A1–A3 in 41.0% (16/39); D1, D3, and D4 in 30.7% (12/39); E in 23.1% (9/39); and F4 in 2.6% (1/39). Besides genotypes A and D, Portuguese were also infected with genotypes E and F, which are prevalent in Africa and South America, respectively. Resistance mutations in RT sequences were not found. The findings provide valuable insights for updating the HBV molecular epidemiology in Portugal. However, successful strategies to prevent and control the infection are still needed in the country, especially among susceptible and vulnerable populations. [ABSTRACT FROM AUTHOR]

Global warming has raised concerns regarding the potential impact on aquatic biosafety and health. To illuminate the adaptive mechanisms of bdelloid rotifers in response to global warming, the ecological and transcriptomic characteristics of two strains (HX and ZJ) of Rotaria rotatoria were investigated at 25°C and 35°C. Our results showed an obvious genetic divergence between the two geographic populations. Thermal stress significantly reduced the average lifespan of R. rotatoria in both strains, but increased the offspring production in the ZJ strain. Furthermore, the expression levels of genes Hsp70 were significantly upregulated in the HX strain, while GSTo1 and Cu/Zn‐SOD were on the contrary. In the ZJ strain, the expression levels of genes Hsp70, CAT2, and GSTo1 were upregulated under thermal stress. Conversely, a significant decrease in the expression level of the Mn‐SOD gene was observed in the ZJ strain under thermal stress. Transcriptomic profiling analysis revealed a total of 105 and 5288 differentially expressed genes (DEGs) in the HX and ZJ strains under thermal stress, respectively. The PCA results showed clear differences in gene expression pattern between HX and ZJ strains under thermal stress. Interestingly, compared to the HX strain, numerous downregulated DEGs in the ZJ strain were enriched into pathways related to metabolism under thermal stress, suggesting that rotifers from the ZJ strain prioritize resource allocation to reproduction by suppressing costly metabolic processes. This finding is consistent with the life table results. This study provides new insights into the adaptive evolution of aquatic animals in the context of global climate change. [ABSTRACT FROM AUTHOR]

Aging in oak barrels is widely used in enology which could bring flavor changes and aromatic complexity to wines. In the present study, the aroma compounds were analyzed from the ‘Merlot’ dry red wines, which were fermented in two types of fermenters (stainless steel tank and rotated oak barrel) and aged in six types of oak barrels (three geographic origins × two toasting degrees) for different time (0, 3, 6 and 9 months, respectively). Results showed that 30 volatiles were associated with barrels and increased during oak aging. The fermenters could influence the intensities of the toast, leathery, smoky, fruity, floral and caramel aromas. The concentration of whisky lactone, eugenol, cis-isoeugenol, and the intensities of the toast and spicy aromas were highest in the wines aged in American oak and were lowest in the wines aged in French oak barrels. The concentrations of guaiacol, syringol, trans-isoeugenol, furfural alcohol, vanilla, cis-whisky lactone enabled the medium toasting barrels to be distinguished from the light toasting ones. The compounds originating from the barrels could be used to distinguish the types of different barrels, but the other general grape-derived and fermentation-derived volatiles could not. The fermenters, oak species and toasting degrees of the barrels all had significant effects on the aroma profiles of the aged ‘Merlot’ dry red wines, but the influence of the geographic origin was not obvious.

This study focusses on the spectroscopic observation of marbles, rubies and the transition zone between ruby and its hosted marble that may distinguish the origin of ruby. Samples of ruby-bearing marble were obtained from Afghanistan, Myanmar, and Pakistan. Energy-dispersive X-ray fluorescence was used to analyze the chemical compositions. Although the content of other elements in the marble varied with the origin, the Cl content was quite constant. A diagram of the trace elements Fe and Ga was used to determine the origins of the marble-hosted rubies. X-ray diffraction was used to verify the structure phases, where trioctahedral mica, plagioclase, quartz, and alkali feldspar were found in marbles. Ultraviolet–visible spectrophotometry was used for rubies, where a 659 nm fluoresce peak was found in the Myanmar ruby sample, which could make Myanmar ruby redder and more sought after. The bonding of elements and inclusions of the samples were analyzed using Fourier transform infrared spectroscopy, Raman spectroscopy, and photoluminescence. A FTIR peak at 630 cm−1 is found to be useful in judging the temperature of ruby formation. Scanning electron microscopy and energy-dispersive X-ray spectroscopy were used to analyze the variation of the transition zone, which revealed that the boundary was a gradation zone. Concentrations of Al203 increased in this zone, but CaCO3 concentrations decreased.

Colletotrichum coccodes (Wallr.) Hughes is an asexual fungus with five vegetative compatibility groups. It was postulated that C. coccodes was isolated at the center of origin of potato at one time, and due to the movement of potato around the globe, the fungus was established on each continent but became bottlenecked and genetically unable to form stable heterokaryons via vegetative compatibility grouping (VCG) studies. The objectives of this study were (i) to determine if the VCGs around the world are related to the VCGs in Chile, (ii) to determine the diversity of C. coccodes populations in Chile, and (iii) to find any evidence for a cryptic sexual life cycle for this fungus. Worldwide C. coccodes populations have been found to be genetically correlated and belong to one or more C. coccodes-identified VCGs. The most distributed VCG in Chile was VCG2, which is the most common VCG in North America. We hypothesize that one or more VCGs had spread from Chile to the rest of the world. Precautions and further studies should be investigated by using other molecular markers and gene sequencing. [ABSTRACT FROM AUTHOR]

Human T-cell lymphotropic virus type 1 (HTLV-1) prevalence in Portugal is low and mainly affects immigrants from endemic areas where human immunodeficiency virus (HIV) infection represents a public health problem. Despite the majority of HTLV-1-infected individuals remains asymptomatic, severe pathologies may develop after prolonged viral persistence, namely an aggressive form of leukemia. An increased mortality rate and faster progression to death is often related to HTLV-1/HIV coinfection. Nevertheless, studies showed that some antiretrovirals used in HIV treatment lead to a positive immune response against HTLV-1. This study aimed to analyze epidemiological and clinical data, and to assess the diversity of HTLV-1 strains circulating in infected residents diagnosed in the Portuguese national reference laboratory between 2010 and 2021. Long terminal repeat and env proviral sequences derived from 20 individuals were used to generate phylogenetic trees along with multiples reference sequences from different geographic origins retrieved from the database. Three samples belong to Portuguese natives and 17 belong to immigrants: 15 from several countries of Africa, 1 from South America, and 1 from Europe; 6 patients (30%, mean age 40.3 years) showed HTLV-1-related diseases, and 6 (30%, mean age 45.2 years) were coinfected with HIV/AIDS. The results show that the Cosmopolitan subtype is circulating in Portugal, with 10 sequences being classified as subgroup A, that include Portuguese and natives from S. Tomé and Príncipe with a mean age of 39.4 years, and 10 sequences that segregated into the Senegal cluster derived from natives born in Guinea-Bissau with a mean age of 43.5 years. A high proportion of HTLV-1-related diseases and HIV/AIDS coinfection was observed. Risk behavior practices and the absence of specific control measures, including diagnostic and treatment, may contribute to a silent dissemination of a broad diversity of HTLV-1 strains and, therefore, the increased rate of progression to debilitating diseases. In this manner, an early diagnostic and a molecular surveillance of HTLV-1 transmission remains necessary in Portugal. [ABSTRACT FROM AUTHOR]

Salicornia ramosissima, commonly known as glasswort or sea asparagus, is a halophyte plant cultivated for human consumption that is often referred to as a sea vegetable rich in health-promoting n-3 fatty acids (FAs). Yet, the effect of abiotic conditions, such as salinity and temperature, on the FA profile of S. ramosissima remains largely unknown. These factors can potentially shape its nutritional composition and yield unique fatty acid signatures that can reveal its geographical origin. In this context, samples of S. ramosissima were collected from four different locations along the coastline of mainland Portugal and their FAs were profiled through gas chromatography–mass spectrometry. The lipid extracts displayed a high content of essential FAs, such as 18:2n-6 and 18:3n-3. In addition to an epoxide fatty acid exclusively identified in samples from the Mondego estuary, the relative abundance of FAs varied between origin sites, revealing that FA profiles can be used as site-specific lipid fingerprints. This study highlights the role of abiotic conditions on the nutritional profile of S. ramosissima and establishes FA profiling as a potential avenue to trace the geographic origin of this halophyte plant. Overall, the present approach can make origin certification possible, safeguard quality, and enhance consumers' trust in novel foods. [ABSTRACT FROM AUTHOR]

The isotopic signatures of human tissues can provide valuable information on geographic origin for medicolegal investigations involving unidentified persons. It is important to understand the impact of diagenetic processes on isotopic signatures, as alterations could result in incorrect estimation of geographic origin. This study examines alterations in isotope signatures of different tissues of five human body donors studied throughout decomposition at the Forensic Anthropology Research Facility (FARF), San Marcos, TX. Two body donors were buried, two were placed in open pits, and one was first allowed to naturally mummify and then buried. Remains were recovered after a period of 7–34 months. The preplacement and post-recovery Sr–Pb isotope data of scalp hair, bone (iliac and tibia), and tooth enamel and dentine were compared. The hair samples record significant shifts in Sr-Pb isotope compositions, with hair keratin Pb isotope composition shifting towards the Pb signature of local soil samples. Hair keratin Sr isotope compositions were altered by the burial environment and possibly also by the lab sample cleaning method. The spongy iliac bone samples show inconsistencies in the recoverability of the preplacement Sr–Pb isotope signatures. The post-placement signatures of the buried donors show slight elevation over preplacement signatures. The post-placement signatures of donors placed in open pits are significantly elevated. The tibia and dental samples record the most consistent isotopic data with the least alteration. These more densely mineralised elements show good recoverability of the preplacement isotope signatures in burials and open pits and are thus deemed better targets for forensic investigative purposes. [ABSTRACT FROM AUTHOR]

Abstract Global warming has raised concerns regarding the potential impact on aquatic biosafety and health. To illuminate the adaptive mechanisms of bdelloid rotifers in response to global warming, the ecological and transcriptomic characteristics of two strains (HX and ZJ) of Rotaria rotatoria were investigated at 25°C and 35°C. Our results showed an obvious genetic divergence between the two geographic populations. Thermal stress significantly reduced the average lifespan of R. rotatoria in both strains, but increased the offspring production in the ZJ strain. Furthermore, the expression levels of genes Hsp70 were significantly upregulated in the HX strain, while GSTo1 and Cu/Zn‐SOD were on the contrary. In the ZJ strain, the expression levels of genes Hsp70, CAT2, and GSTo1 were upregulated under thermal stress. Conversely, a significant decrease in the expression level of the Mn‐SOD gene was observed in the ZJ strain under thermal stress. Transcriptomic profiling analysis revealed a total of 105 and 5288 differentially expressed genes (DEGs) in the HX and ZJ strains under thermal stress, respectively. The PCA results showed clear differences in gene expression pattern between HX and ZJ strains under thermal stress. Interestingly, compared to the HX strain, numerous downregulated DEGs in the ZJ strain were enriched into pathways related to metabolism under thermal stress, suggesting that rotifers from the ZJ strain prioritize resource allocation to reproduction by suppressing costly metabolic processes. This finding is consistent with the life table results. This study provides new insights into the adaptive evolution of aquatic animals in the context of global climate change.

Honey’s chemical and sensory characteristics depend on several factors, including its botanical and geographic origins. The consumers’ increasing interest in monofloral honey and honey with a clear indication of geographic origin make these types of honey susceptible to fraud. The aim was to propose an original chemometric approach for honey’s botanical and geographic authentication purposes. The volatile fraction of almost 100 Italian honey samples (4 out of which are from Greece) from different regions and botanical origins was characterized using HS-SPME-GC-MS; the obtained data were combined for the first time with a genetic algorithm to provide a model for the simultaneous authentication of the botanical and geographic origins of the honey samples. A total of 212 volatile compounds were tentatively identified; strawberry tree honeys were those with the greatest total content (i.e., 4829.2 ng/g). A greater variability in the VOCs’ content was pointed out for botanical than for geographic origin. The genetic algorithm obtained a 100% correct classification for acacia and eucalyptus honeys, while worst results were achieved for honeydew (75%) and wildflower (60%) honeys; concerning geographic authentication, the best results were for Tuscany (92.7%). The original combination of HS-SPME-GC-MS analysis and a genetic algorithm is therefore proposed as a promising tool for honey authentication purposes.

Toona sinensis (A. Juss.) Roem, a multipurpose economic tree, is widely cultivated across Asia, but its high-yielding mature leaves are largely overlooked. This study systematically analysed the flavonols in the mature leaves of T. sinensis from 44 different geographic locations across China, using HPLC-DAD and HPLC-ESI-MS2 techniques. In total, 18 flavonols were detected, among which 6 (f1, f3, f7, f14, f15, and f17) were firstly identified in this plant. Significant variations in quality among different T. sinensis varieties were observed (p

A method was developed to identify and trace the geographic sources of Erigeron breviscapus using high-resolution mass spectrometry and chemometrics. The representative samples were collected from the geographic area of Honghe Dengzhanhua and other areas in Yunnan province and Guizhou province. The data points could be determined well using the PCA and PLS-DA diagram. A total of 46 characteristic compounds were identified from Honghe Dengzhanhua and within Guizhou province, but 37 compounds were different from Honghe Dengzhanhua and other counties in Yunnan province. Two biomarkers were found from three regions. Their structures were inferred as 8-amino-7-oxononanoic acid and 8-hydroxyquinoline, and they had the same molecular composition. This may suggest that a possible synthesis pathway can be proven in the future.

Despite the availability of a vaccine against hepatitis B virus (HBV), this infection still causes public health problems, particularly in susceptible populations. In Portugal, universal free vaccination started in 1994, and most HBV infections are diagnosed in immigrants from high-prevalence countries. Our aim was to assess the pattern of HBV genotypes/subgenotypes in samples collected between 2017 and 2021 from a convenience sample of 70 infected residents in Portugal. The HBV pol/HBsAg region was amplified and sequenced, allowing the analysis of RT sequences submitted to phylogenetic analysis and mutations assessment. A total of 37.1% of samples were from native Portuguese, aged 25–53 years (mean: 36.7 years), and the remaining samples were from individuals born outside of Portugal. A high diversity of HBV was identified: subgenotypes A1–A3 in 41.0% (16/39); D1, D3, and D4 in 30.7% (12/39); E in 23.1% (9/39); and F4 in 2.6% (1/39). Besides genotypes A and D, Portuguese were also infected with genotypes E and F, which are prevalent in Africa and South America, respectively. Resistance mutations in RT sequences were not found. The findings provide valuable insights for updating the HBV molecular epidemiology in Portugal. However, successful strategies to prevent and control the infection are still needed in the country, especially among susceptible and vulnerable populations.

Colletotrichum coccodes (Wallr.) Hughes is an asexual fungus with five vegetative compatibility groups. It was postulated that C. coccodes was isolated at the center of origin of potato at one time, and due to the movement of potato around the globe, the fungus was established on each continent but became bottlenecked and genetically unable to form stable heterokaryons via vegetative compatibility grouping (VCG) studies. The objectives of this study were (i) to determine if the VCGs around the world are related to the VCGs in Chile, (ii) to determine the diversity of C. coccodes populations in Chile, and (iii) to find any evidence for a cryptic sexual life cycle for this fungus. Worldwide C. coccodes populations have been found to be genetically correlated and belong to one or more C. coccodes-identified VCGs. The most distributed VCG in Chile was VCG2, which is the most common VCG in North America. We hypothesize that one or more VCGs had spread from Chile to the rest of the world. Precautions and further studies should be investigated by using other molecular markers and gene sequencing.

Salicornia ramosissima, commonly known as glasswort or sea asparagus, is a halophyte plant cultivated for human consumption that is often referred to as a sea vegetable rich in health-promoting n-3 fatty acids (FAs). Yet, the effect of abiotic conditions, such as salinity and temperature, on the FA profile of S. ramosissima remains largely unknown. These factors can potentially shape its nutritional composition and yield unique fatty acid signatures that can reveal its geographical origin. In this context, samples of S. ramosissima were collected from four different locations along the coastline of mainland Portugal and their FAs were profiled through gas chromatography–mass spectrometry. The lipid extracts displayed a high content of essential FAs, such as 18:2n-6 and 18:3n-3. In addition to an epoxide fatty acid exclusively identified in samples from the Mondego estuary, the relative abundance of FAs varied between origin sites, revealing that FA profiles can be used as site-specific lipid fingerprints. This study highlights the role of abiotic conditions on the nutritional profile of S. ramosissima and establishes FA profiling as a potential avenue to trace the geographic origin of this halophyte plant. Overall, the present approach can make origin certification possible, safeguard quality, and enhance consumers’ trust in novel foods.

An optimized procedure for extracting and analyzing raw pistachio volatiles was developed through headspace sampling with high-capacity tools and subsequent analysis using comprehensive two-dimensional gas chromatography coupled with mass spectrometry. The examination of 18 pistachio samples belonging to different geographic areas led to the identification of a set of 99 volatile organic compounds (VOCs). Molecules were putatively identified using linear retention index, mass spectra similarity, and two-dimensional plot location. The impact of preprocessing and processing techniques on the aligned data matrix from a set of samples of different geographical origins, after removing contaminants, was evaluated. The combination of scaling with log-transformation, normalization with z-score, and data reduction with random forest machine learning algorithm generated a panel of 16 discriminatory VOC molecules. As a proof of concept, raw pistachios' VOC profile was employed for the first time to tentatively classify them based on their geographical origin. [Display omitted] • Use of a DoE for selecting the most suitable high-capacity tool for VOC extraction. • Identification of 99 VOCs in raw pistachios by GC × GC–MS. • Generation of a panel of 16 discriminatory molecules using pre-processing and processing chemometric techniques. • First proof-of concept study to use the VOC profile of raw pistachios to assess geographic origin. [ABSTRACT FROM AUTHOR]

Scientific development provides opportunities to replace many traditional manual methods to achieve more accurate results and higher efficiency. To scientifically ascertain the geographical origin of coffee, this study develops a method for the rapid determination of 16 inorganic elements in coffee using microwave digestion combined with the ICP-MS internal standard method. Principal component analysis (PCA), Fisher discriminant analysis (FDA), and Partial least squares discriminant analysis (PLS-DA) are employed to analyze 40 coffee samples from three production areas of Pu'er, Baoshan, and Wanning. The results show that the linear correlation coefficients of the 16 elements in this method are above 0.999, the detection limits are in the range of 0.0004-0.63 mg/kg, the RSD of the precision experiments are 4.5 %-13.5 %, the recovery rate of the peak experiment is 86.0 %-96.3 % with the RSD of 1.1 %-8.8 %, and the results of the standard substances are within the range of standard values. Using the discriminant analysis of inorganic elements in coffee (FDA and PLS-DA), coffee origin discrimination was realized, and six key elements (Al, Mn, Fe, Cu, Na, and Ba) are identified as effective discriminatory indexes. Accordingly, a coffee origin discrimination model is established, and the overall accuracy discrimination rate of the discrimination model are all more than 90.0 %, and FDA > PLS-DA. The findings indicated that the method has good accuracy and reliability, is suitable for analyzing and determining multiple elements in sample components as targets, and may have a positive impact on the development of related industries., Competing Interests: The authors declare no conflict of interest. They have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)

This study aimed at evaluating physicochemical traits of olive oil ('Haouzia' and 'Moroccan Picholine') according to extraction technologies (ETs: super-pressure SP, 2-phase 2 P, and 3-phase 3 P) across eight climatically contrasted Moroccan agroclimatic areas (AA). Our samples were classified as extra virgin olive oil (EVOO), whose traits varied (p < 0.05) among ETs, cultivars, and AA. EVOO from SP had high records of basic indices, most phytosterols, and trans fatty acids (TFA) due to partial oxidation during extraction, while continuous ETs (2 P and 3 P) displayed a better oil quality as demonstrated by routinely measured parameters. 'Haouzia' had the greatest saturated (SFA), monounsaturated (MUFA), polyunsaturated fatty acids (PUFA), and TFA. However, it had a lesser stability revealed by a low MUFA/PUFA and oleic/linoleic (O/L) as compared to 'Moroccan Picholine'. Arid climatic areas had the highest palmitoleic, oleic acid, MUFA, MUFA/PUFA, and O/L and therefore the best oil stability as compared to the remaining agroclimatic areas. These variations were confirmed by principal component analysis, cluster analysis, and artificial neural networks. Important simple and multiple regression models with strong correlations were highlighted among the studied variables. In conclusion, environmental conditions have a key role to be considered when assessing olive oil quality and authenticity. • Olive oils were investigated across eight Moroccan agroclimatic areas (ACA). • Major extraction technologies (2-phase, 3-phase, and super-pressure) were studied. • Artificial neural network, clustering, correlations, PCA, and regressions were used. • ACA together with cultivar were the main variability drivers in our data. • As compared to other climates, more arid ACA had higher oil oxidative stability. [ABSTRACT FROM AUTHOR]

This study investigates concentrations of toxic and potentially toxic elements (PTEs) in organic and conventional wheat flour and grains marketed in Las Vegas. Geographic origins of the samples were evaluated using Linear Discriminant Analysis (LDA). Monte Carlo Simulation technique was also employed to evaluate non-carcinogenic risk in four life stages. Concentrations of Al, As, Cd, Co, Cr, Cu, Fe, Mn, Mo, Ni, Pb, Se, Sr, and Zn were determined using inductively coupled plasma mass spectrometry (ICP-MS) following hot block-assisted digestion. Obtained results showed non-significant differences in contents of toxic and PTEs between conventional and organic wheat grains/flour. Using LDA, metal (loid)s were found to be indicative of geographical origin. The LDA produced a total correct classification rate of 95.8% and 100% for US and West Pacific Region samples, respectively. The results of the present study indicate that the estimated non-carcinogenic risk associated with toxic element intakes across the four life stages were far lower than the threshold value (Target Hazard Quotient (THQ) > 1). However, the probability of exceeding the threshold value for Mn is approximately 32% in children aged between 5 and 8 years. The findings of this study can aid in understanding dietary Mn exposure in children in Las Vegas. • This study investigated the elemental contents of wheat from the Las Vegas market. • The contents of metal (loid)s b/n organic and conventional wheat were comparable. • Metal (loid)s were used as descriptors to classify the geographic origin of wheat. • Monte Carlo Simulation technique was employed to evaluate non-carcinogenic risks. • Mean THQ values for Mn exceed the threshold value (THQ = 1) in two life stages. [ABSTRACT FROM AUTHOR]

Soluble sugars play a vital role as taste components in fruits, significantly contributing to fruit quality. Here, we employed ultraperformance liquid chromatography (UPLC) to determine the sugar composition of mature pear fruits from 142 cultivars. The results revealed that fructose, sorbitol, glucose, and sucrose were the primary soluble sugars present in pear fruit, and Pyrus pyrifolia (China) exhibited the highest total sugar content, followed by Pyrus ussuriensis , Pyrus bretschneideri , Pyrus communis , and Pyrus pyrifolia (Japanese and Korean (J&K)), Pyrus sinkiangensis , and the Hybrid Breeding (HB) cultivars. Furthermore, our study uncovered that the sampling time of these pear cultivars has a significant positive correlation with the content of sorbitol and glucose, respectively. Additionally, the soluble sugar content varied among pear fruits originating from different geographic positions, and the pear cultivars originating from the South China group presented the highest content of soluble sugar. In conclusion, these findings can provide valuable phenotypic data for studying sugar genetics and can also aid in selecting suitable parent cultivars in pear breeding programs. • The soluble sugar content varied among 142 pear germplasm. • Sorbitol and glucose content showed a positive correlation with fruit sampling time. • Soluble sugar contents varied in pear germplasm from different geographical areas. • Pear cultivars from South China present the highest total sugar content. [ABSTRACT FROM AUTHOR]

This paper applies near-infrared spectroscopy (NIRS) and multiple chemometrics to efficiently distinguish the origins of fresh tea leaves. The key components were obtained using the partial least squares discriminant analysis (PLS-DA) method. PLS, synergy interval PLS (siPLS), principal component analysis (PCA), genetic algorithm (GA), and their combination methods were used to establish NIRS non-destructive discrimination models. Then, the practical application was examined using external samples. The study identified nine key components (variable importance for the projection (VIP) > 1): epigallocatechin, epicatechin, total sugar, water extracts, total catechins, gallocatechin gallate, tea polyphenols, gallocatechin, and epigallocatechin gallate. Of the six NIRS models, the siPLS-GA model that used 37 spectral data points produced the best results (Rp2 = 0.9706, RMSEP = 0.0772, RPD = 6.59). This model had a prediction accuracy of 96.67% for the prediction set samples and 93.33% for the external samples. It offers a rapid, precise, and non-invasive approach to monitor and regulate the illicit trade of fresh tea leaves, thereby guaranteeing the authenticity of Enshi Yulu products from the processing source and fostering the long-term prosperity and stability of the Enshi Yulu tea industry. • There is a limited amount of research on using NIRS to trace the origin of fresh tea leaves. • PLS-DA was used to identify the origins of fresh tea leaves based on nine key components. • The NIRS-siPLS-GA digital combination model exhibits high robustness and wide adaptability. • It is a low-cost modeling solution effectively addresses the authenticity problem of Enshi Yulu. • The research findings suggest broad application prospects. [ABSTRACT FROM AUTHOR]

Concordia in Argentina and Salto in Uruguay are two neighbouring regions famous for the production of a precious citrus honey, whose valorisation passes through the ability to guarantee its geographical origin. In this study the influence of the different botanical origins (monofloral and polyfloral) within the same region of origin on the different stable isotope ratios was evaluated. Moreover, the effectiveness of the stable isotope ratio parameters δ 13C honey , δ 13C protein , δ 15N protein , δ 34S protein , δ 2H protein and δ 18O protein to discriminate between honeys produced in the internal border regions between Argentina and Uruguay (namely, Concordia and Salto) and honeys sampled in the two different Uruguayan coastal regions (Canelones and Maldonado) was tested on 82 monofloral and polyfloral honey samples. The results show that the different stable isotope ratios, except that of nitrogen, are not significantly influenced by the botanical origin of the samples. The sulphur isotopic ratio of proteins and carbon of honey are the most significant parameters for discriminating the geographical origin of the honeys considered. Applied a Principal Component Analysis, the first two factors overall explain 63.5% of the total variance, while the Discriminant Analysis provided optimal discrimination between the three origins, reaching a minimum of 96.7% correct reclassification. • Stable isotopes and melyssopalinological analyses were applied to different honeys. • Honey samples from Uruguay/Argentina inland and coastal regions were compared. • Honey from Concordia-Salto statistically differs from that coming from other regions. • δ 34S protein allows for efficient geographical honey differentiation. • Honey botanical origin does not seem to influence most of its stable isotope ratios. [ABSTRACT FROM AUTHOR]

Salivary bacterial community composition is associated with the host's internal and environmental factors, which have potential applications in forensic practice. The 16S rRNA gene sequencing is the most commonly used strategy for detecting salivary bacterial diversity; however, its platforms are not compatible with capillary electrophoresis (CE) platforms commonly used for forensic applications. Therefore, we attempted to detect the salivary bacterial diversity using a single nucleotide polymorphism (SNP) assay. Salivary bacterial diversity varies among diverse geographic locations, making it a potential supplementary biomarker for forensic geographic sourcing. To evaluate the performance of the multiplex SNaPshot assay, saliva samples from three geographic locations in China were analyzed using the multiplex SNaPshot assay and 16S rRNA gene sequencing. We screened SNPs from two high-relative-abundance salivary genera (Streptococcus and Veillonella) to construct a multiplex SNaPshot system that can be used on the CE platform. The stability and sensitivity of the multiplex SNaPshot system were also tested. A random forest classification model was used to classify samples from different regions to explore the ability of salivary bacteria to discriminate between geographic sources. Six bacterial SNPs were screened and a multiplex SNaPshot system was constructed. The stability results showed that the typing of salivary stains that were placed indoors for different days was not affected in this study. Two-thirds of mocked salivary stain samples showed more than 90% of typing results obtained for salivary stain samples with an input of 0.1 µl saliva. The results of principal coordinate analysis based on salivary bacterial diversity showed significant differences between samples from the three different geographic locations. The accuracy of the random forest classification was 66.67% based on the multiplex SNaPshot assay and 83.33% based on the 16S rRNA gene sequencing. In conclusion, this is the first attempt to detect salivary bacterial diversity using a multiplex SNaPshot bacterial SNP assay. The geographic difference in human salivary bacterial community composition was significant, as revealed by the multiplex SNaPshot assay; however, its performance in discriminating geographic sources was lower than that of 16S rRNA gene sequencing. This strategy based on bacterial SNP loci may favor the detection of human bacterial diversity in common forensic laboratories but requires further exploration in larger sample sizes and more bacterial SNP loci. • A primary exploration that uses a bacterial SNP assay to detect human salivary bacterial diversity • Screening six bacterial SNPs from Streptococcus and Veillonella genera, and constructing a multiplex SNaPshot system • The geographic difference in salivary bacteria was significant, as revealed by the SNPassay and 16S rRNA gene sequencing [ABSTRACT FROM AUTHOR]

The cacao crop spread throughout the world from its center of origin in South America. However, one of its main diseases cacao swollen shoot disease (CSSD), which is caused by the complex of cacao-infecting badnaviruses, was first detected in Africa. Here we investigate the relationship between the genetic diversity of the viruses that cause CSSD and their geographical distribution, and the possible relationship between the genetic diversity of the virus and the symptoms they trigger. We also sought to determine the evolutionary models that could explain this relationship and evaluate the evolutionary history of the virus through ancestral state reconstructions and temporality analyses. A high mutation rate was observed along with a clear phylogenetic signal in the geographic distribution and in the symptoms associated with each viral species. The molecular clock provided new evidence on the emergence and speciation of cacao-infecting badnaviruses, suggesting a possible American origin of these viruses. • A high mutation rate was observed of the CSSV species. • Geographical region and Symptoms traits showed a clear phylogenetic signal. • In Africa, Ghana was found as the center of virus dispersal. • CSSV possibly originated from America. • The evolutionary history of CSSD together with cacao spread was reconstructed. [ABSTRACT FROM AUTHOR]

Toona sinensis (A. Juss.) Roem, a multipurpose economic tree, is widely cultivated across Asia, but its high-yielding mature leaves are largely overlooked. This study systematically analysed the flavonols in the mature leaves of T. sinensis from 44 different geographic locations across China, using HPLC-DAD and HPLC-ESI-MS 2 techniques. In total, 18 flavonols were detected, among which 6 (f1, f3, f7, f14, f15, and f17) were firstly identified in this plant. Significant variations in quality among different T. sinensis varieties were observed ( p  < 0.01). Through OPLS-DA analysis, all samples could be clearly categorised into two distinct geographical groups. The northern varieties (N1-N20) exhibited concise flavonol fingerprints with higher total flavonol content (TFC) (727.55 ± 22.79 mg/100 g fresh weight, FW), predominantly non-acylated flavonols (705.95 ± 21.65 mg/100 g FW), particularly quercetin glycosides (614.60 ± 22.76 mg/100 g FW). In contrast, the southern varieties (S1-S24) presented more intricate flavonol profiles with lower TFC (622.81 ± 21.82 mg/100 g FW) and balanced amounts of quercetin (344.75 ± 16.41 mg/100 g FW) and kaempferol glycosides (278.06 ± 12.29 mg/100 g FW). Notably, the southern samples possessed higher content of acylated flavonols (184.50 ± 12.87 mg/100 g FW), especially galloylated ones, which contributed to their heightened antioxidant activities. Quercetin 3- O -rhamnoside (f11') and kaempferol 3- O -galloyglucoside (f11) were determined to be the crucial biomarkers for quality discrimination. Considering quality control of mature T. sinensis leaves as potential resources for natural flavonol extraction, this study suggested that their northern/southern geographic origins should be distinguished first. Additionally, the flavonol profiles allow for discriminating the origin and assessing the quality of T. sinensis ., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)