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Biosensing based on optically trapped fluorescent nanodiamonds is an intriguing research direction potentially allowing to resolve biochemical processes inside living cells. Towards this goal, we investigate infrared near (NIR) laser irradiation at 1064 nm on fluorescent nanodiamonds (FNDs) containing nitrogen-vacancy (NV) centers. By conducting comprehensive experiments, we aim to understand how NIR exposure influences the fluorescence and sensing properties of FNDs and to determine the potential implications for the use of FNDs in various sensing applications. The experimental setup involved exposing FNDs to varying intensities of NIR laser light and analyzing the resultant changes in their optical and physical properties. Key measurements included T1 relaxation times, optical spectroscopy, and optically detected magnetic resonance (ODMR) spectra. The findings reveal how increased NIR laser power correlates with alterations in ODMR central frequency but also that charge state dynamics under NIR irradiation of NV centers plays a role. We suggest protocols with NIR and green light that mitigate the effect of NIR, and demonstrate that FND biosensing works well with such a protocol.