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In this study, we propose a novel method for algal bed region segmentation using aerial images. Accurately determining the carbon dioxide absorption capacity of coastal algae requires measurements of algal bed regions. However, conventional manual measurement methods are resource-intensive and time-consuming, which hinders the advancement of the field. To solve these problems, we propose a novel method for automatic algal bed region segmentation using aerial images. In our method, we use an advanced semantic segmentation model, a ViT adapter, and adapt it to aerial images for algal bed region segmentation. Our method demonstrates high accuracy in identifying algal bed regions in an aerial image dataset collected from Hokkaido, Japan. The experimental results for five different ecological regions show that the mean intersection over union (mIoU) and mean F-score of our method in the validation set reach 0.787 and 0.870, the IoU and F-score for the background region are 0.957 and 0.978, and the IoU and F-score for the algal bed region are 0.616 and 0.762, respectively. In particular, the mean recognition area compared with the ground truth area annotated manually is 0.861. Our study contributes to the advancement of blue carbon assessment by introducing a novel semantic segmentation-based method for identifying algal bed regions using aerial images. [ABSTRACT FROM AUTHOR]