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Existing X-ray based pre-trained vision models are usually conducted on a relatively small-scale dataset (less than 500k samples) with limited resolution (e.g., 224 $\times$ 224). However, the key to the success of self-supervised pre-training large models lies in massive training data, and maintaining high resolution in the field of X-ray images is the guarantee of effective solutions to difficult miscellaneous diseases. In this paper, we address these issues by proposing the first high-definition (1280 $\times$ 1280) X-ray based pre-trained foundation vision model on our newly collected large-scale dataset which contains more than 1 million X-ray images. Our model follows the masked auto-encoder framework which takes the tokens after mask processing (with a high rate) is used as input, and the masked image patches are reconstructed by the Transformer encoder-decoder network. More importantly, we introduce a novel context-aware masking strategy that utilizes the chest contour as a boundary for adaptive masking operations. We validate the effectiveness of our model on two downstream tasks, including X-ray report generation and disease recognition. Extensive experiments demonstrate that our pre-trained medical foundation vision model achieves comparable or even new state-of-the-art performance on downstream benchmark datasets. The source code and pre-trained models of this paper will be released on https://github.com/Event-AHU/Medical_Image_Analysis., Comment: Technology Report

This paper focuses on the development of a space-variant regularization model for solving an under-determined linear inverse problem. The case study is a medical image reconstruction from few-view tomographic noisy data. The primary objective of the proposed optimization model is to achieve a good balance between denoising and the preservation of fine details and edges, overcoming the performance of the popular and largely used Total Variation (TV) regularization through the application of appropriate pixel-dependent weights. The proposed strategy leverages the role of gradient approximations for the computation of the space-variant TV weights. For this reason, a convolutional neural network is designed, to approximate both the ground truth image and its gradient using an elastic loss function in its training. Additionally, the paper provides a theoretical analysis of the proposed model, showing the uniqueness of its solution, and illustrates a Chambolle-Pock algorithm tailored to address the specific problem at hand. This comprehensive framework integrates innovative regularization techniques with advanced neural network capabilities, demonstrating promising results in achieving high-quality reconstructions from low-sampled tomographic data.

Blind single image super-resolution (SISR) is a challenging task in image processing due to the ill-posed nature of the inverse problem. Complex degradations present in real life images make it difficult to solve this problem using na\"ive deep learning approaches, where models are often trained on synthetically generated image pairs. Most of the effort so far has been focused on solving the inverse problem under some constraints, such as for a limited space of blur kernels and/or assuming noise-free input images. Yet, there is a gap in the literature to provide a well-generalized deep learning-based solution that performs well on images with unknown and highly complex degradations. In this paper, we propose IKR-Net (Iterative Kernel Reconstruction Network) for blind SISR. In the proposed approach, kernel and noise estimation and high-resolution image reconstruction are carried out iteratively using dedicated deep models. The iterative refinement provides significant improvement in both the reconstructed image and the estimated blur kernel even for noisy inputs. IKR-Net provides a generalized solution that can handle any type of blur and level of noise in the input low-resolution image. IKR-Net achieves state-of-the-art results in blind SISR, especially for noisy images with motion blur., Comment: 17 pages, 13 figures. The code of this paper is available in github: https://github.com/hfates/IKR-Net

Deep learning (DL) has recently emerged as a pivotal technology for enhancing magnetic resonance imaging (MRI), a critical tool in diagnostic radiology. This review paper provides a comprehensive overview of recent advances in DL for MRI reconstruction. It focuses on DL approaches and architectures designed to improve image quality, accelerate scans, and address data-related challenges. These include end-to-end neural networks, pre-trained networks, generative models, and self-supervised methods. The paper also discusses the role of DL in optimizing acquisition protocols, enhancing robustness against distribution shifts, and tackling subtle bias. Drawing on the extensive literature and practical insights, it outlines current successes, limitations, and future directions for leveraging DL in MRI reconstruction, while emphasizing the potential of DL to significantly impact clinical imaging practices.

Intrigued by the inherent ability of the human visual system to identify salient regions in complex scenes, attention mechanisms have been seamlessly integrated into various Computer Vision (CV) tasks. Building upon this paradigm, Vision Transformer (ViT) networks exploit attention mechanisms for improved efficiency. This review navigates the landscape of redesigned attention mechanisms within ViTs, aiming to enhance their performance. This paper provides a comprehensive exploration of techniques and insights for designing attention mechanisms, systematically reviewing recent literature in the field of CV. This survey begins with an introduction to the theoretical foundations and fundamental concepts underlying attention mechanisms. We then present a systematic taxonomy of various attention mechanisms within ViTs, employing redesigned approaches. A multi-perspective categorization is proposed based on their application, objectives, and the type of attention applied. The analysis includes an exploration of the novelty, strengths, weaknesses, and an in-depth evaluation of the different proposed strategies. This culminates in the development of taxonomies that highlight key properties and contributions. Finally, we gather the reviewed studies along with their available open-source implementations at our \href{https://github.com/mindflow-institue/Awesome-Attention-Mechanism-in-Medical-Imaging}{GitHub}\footnote{\url{https://github.com/xmindflow/Awesome-Attention-Mechanism-in-Medical-Imaging}}. We aim to regularly update it with the most recent relevant papers., Comment: Submitted to Computational Visual Media Journal

In goal-oriented communications, the objective of the receiver is often to apply a Deep-Learning model, rather than reconstructing the original data. In this context, direct learning over compressed data, without any prior decoding, holds promise for enhancing the time-efficient execution of inference models at the receiver. However, conventional entropic-coding methods like Huffman and Arithmetic break data structure, rendering them unsuitable for learning without decoding. In this paper, we propose an alternative approach in which entropic coding is realized with Low-Density Parity Check (LDPC) codes. We hypothesize that Deep Learning models can more effectively exploit the internal code structure of LDPC codes. At the receiver, we leverage a specific class of Recurrent Neural Networks (RNNs), specifically Gated Recurrent Unit (GRU), trained for image classification. Our numerical results indicate that classification based on LDPC-coded bit-planes surpasses Huffman and Arithmetic coding, while necessitating a significantly smaller learning model. This demonstrates the efficiency of classification directly from LDPC-coded data, eliminating the need for any form of decompression, even partial, prior to applying the learning model., Comment: 5 pages, 3 figures, conference paper, submitted to the EUSIPCO 2024 Conference

The high-dimensional feature space of the hyperspectral imagery poses major challenges to the processing and analysis of the hyperspectral data sets. In such a case, dimensionality reduction is necessary to decrease the computational complexity. The random projections open up new ways of dimensionality reduction, especially for large data sets. In this paper, the principal component analysis (PCA) and randomized principal component analysis (R-PCA) for the classification of hyperspectral images using support vector machines (SVM) and light gradient boosting machines (LightGBM) have been investigated. In this experimental research, the number of features was reduced to 20 and 30 for classification of two hyperspectral datasets (Indian Pines and Pavia University). The experimental results demonstrated that PCA outperformed R-PCA for SVM for both datasets, but received close accuracy values for LightGBM. The highest classification accuracies were obtained as 0.9925 and 0.9639 by LightGBM with original features for the Pavia University and Indian Pines, respectively., Comment: 5 pages, I have submitted this paper to M2GARSS 2024, 2024 IEEE Mediterranean and Middle-East Geoscience and Remote Sensing Symposium

In recent years, there has been a notable advancement in the integration of healthcare and technology, particularly evident in the field of medical image analysis. This paper introduces a pioneering approach in dermatology, presenting a robust method for the detection of hair and scalp diseases using state-of-the-art deep learning techniques. Our methodology relies on Convolutional Neural Networks (CNNs), well-known for their efficacy in image recognition, to meticulously analyze images for various dermatological conditions affecting the hair and scalp. Our proposed system represents a significant advancement in dermatological diagnostics, offering a non-invasive and highly efficient means of early detection and diagnosis. By leveraging the capabilities of CNNs, our model holds the potential to revolutionize dermatology, providing accessible and timely healthcare solutions. Furthermore, the seamless integration of our trained model into a web-based platform developed with the Django framework ensures broad accessibility and usability, democratizing advanced medical diagnostics. The integration of machine learning algorithms into web applications marks a pivotal moment in healthcare delivery, promising empowerment for both healthcare providers and patients. Through the synergy between technology and healthcare, our paper outlines the meticulous methodology, technical intricacies, and promising future prospects of our system. With a steadfast commitment to advancing healthcare frontiers, our goal is to significantly contribute to leveraging technology for improved healthcare outcomes globally. This endeavor underscores the profound impact of technological innovation in shaping the future of healthcare delivery and patient care, highlighting the transformative potential of our approach.

Satellites equipped with optical sensors capture high-resolution imagery, providing valuable insights into various environmental phenomena. In recent years, there has been a surge of research focused on addressing some challenges in remote sensing, ranging from water detection in diverse landscapes to the segmentation of mountainous and terrains. Ongoing investigations goals to enhance the precision and efficiency of satellite imagery analysis. Especially, there is a growing emphasis on developing methodologies for accurate water body detection, snow and clouds, important for environmental monitoring, resource management, and disaster response. Within this context, this paper focus on the cloud segmentation from remote sensing imagery. Accurate remote sensing data analysis can be challenging due to the presence of clouds in optical sensor-based applications. The quality of resulting products such as applications and research is directly impacted by cloud detection, which plays a key role in the remote sensing data processing pipeline. This paper examines seven cutting-edge semantic segmentation and detection algorithms applied to clouds identification, conducting a benchmark analysis to evaluate their architectural approaches and identify the most performing ones. To increase the model's adaptability, critical elements including the type of imagery and the amount of spectral bands used during training are analyzed. Additionally, this research tries to produce machine learning algorithms that can perform cloud segmentation using only a few spectral bands, including RGB and RGBN-IR combinations. The model's flexibility for a variety of applications and user scenarios is assessed by using imagery from Sentinel-2 and Landsat-8 as datasets. This benchmark can be reproduced using the material from this github link: https://github.com/toelt-llc/cloud_segmentation_comparative., Comment: Submitted to Expert Systems and Applications. Under license CC-BY-NC-ND

Computed tomography (CT) is a beneficial imaging tool for diagnostic purposes. CT scans provide detailed information concerning the internal anatomic structures of a patient, but present higher radiation dose and costs compared to X-ray imaging. In this paper, we build on previous research to convert orthogonal X-ray images into simulated CT volumes by exploring larger datasets and various model structures. Significant model variations include UNet architectures, custom connections, activation functions, loss functions, optimizers, and a novel back projection approach., Comment: Originally submitted as part of the MICS 2023 Undergraduate Paper Competition