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The Longshou Shan, located in western China, plays a crucial role in connecting the Tarim Continent with the North China Craton. It provides valuable insights into the Cenozoic intracontinental deformation, the complex dynamics of Eurasian tectonics, and the relationship between the pre-Cenozoic Tethys and Central Asian orogenic systems. Consequently, comprehending the evolution of the Phanerozoic era in this region holds immense significance. Zircon (U-Th)/He (ZHe) dating was conducted on three granite samples (n = 18) collected from the Longshou Shan. The ZHe dates of these granite rocks range from 7.2 to 517.7 Ma, showing a negative correlation with eU values. Furthermore, a limestone sample from the Longshou Shan yielded ZHe (n = 4) ages of 172.0–277.1 Ma and AHe (n = 4) ages of 17–111.9 Ma. The area has undergone complex tectonic processes involving multiple phases of uplift and burial. Using both forward and inverse modeling methods, we aim to establish plausible thermal histories. Our models reveal: (1) Late Paleozoic unroofing; (2) Early Mesozoic cooling and Late Mesozoic regional stabilization; and (3) Cenozoic reheating and subsequent cooling. By investigating the intricate thermal history of the Longshou Shan through multi-method modeling, we compare different approaches and assess the capabilities of single ZHe dating for understanding a thermal history. This research contributes to unraveling the region's geological complexities and aids in evaluating various modeling methods. [ABSTRACT FROM AUTHOR]