11 results on '"in-host model"'
Search Results
2. Mathematical Model of In-host Dynamics of Snakebite Envenoming.
- Author
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Abdullahi, S. A., Habib, A. G., and Hussaini, N.
- Subjects
- *
SNAKEBITES , *BLOOD platelets , *ANTIVENINS , *COMPUTER simulation , *MATHEMATICAL models - Abstract
In this paper, we develop an in-host mathematical model of snakebite envenoming that includes tissue, red blood and platelet cells of humans as specific targets of different kinds of toxins in the snake venom. The model is use to study some harmful effects of cytotoxic and hemotoxic snake venom on their target cells under the influence of snake antivenom. The model has two equilibrium points, namely, trivial and venom free. It has been shown that both the equilibrium points are globally asymptotically stable and numerical simulations illustrate the global asymptotic stability of the venom free equilibrium point. Furthermore, simulations reveal the importance of administering antivenom to avert the possible damage from venom toxins on the target cells. It is also shown through simulation that administering the required dose of antivenom can lead to the elimination of venom toxins within one week. Therefore, we recommend the administration of an adequate dose of antivenom therapy as it helps in deactivating venom toxins faster and consequently enhances the recovery time. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
3. Dynamical characterization of antiviral effects in COVID-19.
- Author
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Abuin, Pablo, Anderson, Alejandro, Ferramosca, Antonio, Hernandez-Vargas, Esteban A., and Gonzalez, Alejandro H.
- Subjects
- *
COVID-19 , *TREATMENT effectiveness , *SARS-CoV-2 , *IMMUNE response , *MATHEMATICAL models - Abstract
Mathematical models describing SARS-CoV-2 dynamics and the corresponding immune responses in patients with COVID-19 can be critical to evaluate possible clinical outcomes of antiviral treatments. In this work, based on the concept of virus spreadability in the host, antiviral effectiveness thresholds are determined to establish whether or not a treatment will be able to clear the infection. In addition, the virus dynamic in the host – including the time-to-peak and the final monotonically decreasing behavior – is characterized as a function of the time to treatment initiation. Simulation results, based on nine patient data, show the potential clinical benefits of a treatment classification according to patient critical parameters. This study is aimed at paving the way for the different antivirals being developed to tackle SARS-CoV-2. • A full dynamic characterization of a target cell-limited model for COVID-19 is presented. • Formal threshold values for the antiviral effectiveness are given. • A study of both, effective and ineffective treatments is made. • Simulation results show the potential benefits of the antiviral effectiveness characterization. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
4. Bistable dynamics and Hopf bifurcation in a refined model of early stage HIV infection.
- Author
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Pankavich, Stephen, Neri, Nathan, and Shutt, Deborah
- Subjects
HIV infections ,HOPF bifurcations ,VIRAL load ,PATHOLOGY ,T cells ,BASIC reproduction number ,HIV - Abstract
Recent clinical studies have shown that HIV disease pathogenesis can depend strongly on many factors at the time of transmission, including the strength of the initial viral load and the local availability of CD4+ T-cells. In this article, a new within-host model of HIV infection that incorporates the homeostatic proliferation of T-cells is formulated and analyzed. Due to the effects of this biological process, the influence of initial conditions on the proliferation of HIV infection is further elucidated. The identifiability of parameters within the model is investigated and a local stability analysis, which displays additional complexity in comparison to previous models, is conducted. The current study extends previous theoretical and computational work on the early stages of the disease and leads to interesting nonlinear dynamics, including a parameter region featuring bistability of infectious and viral clearance equilibria and the appearance of a Hopf bifurcation within biologically relevant parameter regimes. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
5. Characterization of SARS-CoV-2 dynamics in the host.
- Author
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Abuin, Pablo, Anderson, Alejandro, Ferramosca, Antonio, Hernandez-Vargas, Esteban A., and Gonzalez, Alejandro H.
- Subjects
- *
SARS-CoV-2 , *COVID-19 pandemic , *EPIDEMIOLOGICAL models , *MATHEMATICAL analysis , *VIRAL replication - Abstract
While many epidemiological models were proposed to understand and handle COVID-19 pandemic, too little has been invested to understand human viral replication and the potential use of novel antivirals to tackle the infection. In this work, using a control theoretical approach, validated mathematical models of SARS-CoV-2 in humans are characterized. A complete analysis of the main dynamic characteristic is developed based on the reproduction number. The equilibrium regions of the system are fully characterized, and the stability of such regions is formally established. Mathematical analysis highlights critical conditions to decrease monotonically SARS-CoV-2 in the host, as such conditions are relevant to tailor future antiviral treatments. Simulation results show the aforementioned system characterization. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
6. Multiple cohort study of hospitalized SARS-CoV-2 in-host infection dynamics: Parameter estimates, identifiability, sensitivity and the eclipse phase profile
- Author
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Korosec, Chapin S., Betti, Matthew I., Dick, David W., Ooi, Hsu Kiang, Moyles, Iain R., Wahl, Lindi M., and Heffernan, Jane M.
- Subjects
Statistics and Probability ,General Immunology and Microbiology ,Applied Mathematics ,reproduction number ,General Medicine ,practical identifiability ,General Biochemistry, Genetics and Molecular Biology ,viral load ,structural identifiability ,TEIV model ,Modeling and Simulation ,eclipse phase ,SARS-coV-2 ,General Agricultural and Biological Sciences ,in-host model - Abstract
Within-host SARS-CoV-2 modelling studies have been published throughout the COVID-19 pandemic. These studies contain highly variable numbers of individuals and capture varying timescales of pathogen dynamics; some studies capture the time of disease onset, the peak viral load and subsequent heterogeneity in clearance dynamics across individuals, while others capture late-time post-peak dynamics. In this study, we curate multiple previously published SARS-CoV-2 viral load data sets, fit these data with a consistent modelling approach, and estimate the variability of in-host parameters including the basic reproduction number, 𝑅0, as well as the best-fit eclipse phase profile. We find that fitted dynamics can be highly variable across data sets, and highly variable within data sets, particularly when key components of the dynamic trajectories (e.g. peak viral load) are not represented in the data. Further, we investigated the role of the eclipse phase time distribution in fitting SARS-CoV-2 viral load data. By varying the shape parameter of an Erlang distribution, we demonstrate that models with either no eclipse phase, or with an exponentially-distributed eclipse phase, offer significantly worse fits to these data, whereas models with less dispersion around the mean eclipse time (shape parameter two or more) offered the best fits to the available data across all data sets used in this work. This manuscript was submitted as part of a theme issue on "Modelling COVID-19 and Preparedness for Future Pandemics".
- Published
- 2023
- Full Text
- View/download PDF
7. Dynamical characterization of antiviral effects in COVID-19
- Author
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Alejandro H. González, Pablo Abuin, Antonio Ferramosca, Alejandro Anderson, and Esteban A. Hernandez-Vargas
- Subjects
0209 industrial biotechnology ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Time to treatment ,Dynamical Systems (math.DS) ,02 engineering and technology ,Computational biology ,Antiviral effectiveness ,Dynamic characterization ,In-host model ,SARS-CoV-2 ,Article ,020901 industrial engineering & automation ,Settore ING-INF/04 - Automatica ,Spreadability ,FOS: Mathematics ,0202 electrical engineering, electronic engineering, information engineering ,In patient ,Mathematics - Dynamical Systems ,Quantitative Biology - Populations and Evolution ,Treatment classification ,020208 electrical & electronic engineering ,Populations and Evolution (q-bio.PE) ,Patient data ,Control and Systems Engineering ,FOS: Biological sciences ,Software - Abstract
Mathematical models describing SARS-CoV-2 dynamics and the corresponding immune responses in patients with COVID-19 can be critical to evaluate possible clinical outcomes of antiviral treatments. In this work, based on the concept of virus spreadability in the host, antiviral effectiveness thresholds are determined to establish whether or not a treatment will be able to clear the infection. In addition, the virus dynamic in the host -- including the time-to-peak and the final monotonically decreasing behavior -- is chracterized as a function of the treatment initial time. Simulation results, based on nine real patient data, show the potential clinical benefits of a treatment classification according to patient critical parameters. This study is aimed at paving the way for the different antivirals being developed to tackle SARS-CoV-2.
- Published
- 2021
8. GLOBAL STABILITY AND BACKWARD BIFURCATION OF A GENERAL VIRAL INFECTION MODEL WITH VIRUS-DRIVEN PROLIFERATION OF TARGET CELLS.
- Author
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HONGYING SHU and LIN WANG
- Subjects
BIFURCATION theory ,VIRUS diseases ,CELL proliferation ,LYAPUNOV stability ,DRUG therapy - Abstract
In this paper, a general viral model with virus-driven proliferation of target cells is studied. Global stability results are established by employing the Lyapunov method and a geometric approach developed by Li and Muldowney. It is shown that under certain conditions, the model exhibits a global threshold dynamics, while if these conditions are not met, then backward bifurcation and bistability are possible. An example is presented to provide some insights on how the virus-driven proliferation of target cells inuences the virus dynamics and the drug therapy strategies. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
9. Joint effects of mitosis and intracellular delay on viral dynamics: two-parameter bifurcation analysis.
- Author
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Li, Michael and Shu, Hongying
- Subjects
- *
MITOSIS , *VIRUS diseases , *BIFURCATION theory , *LOGISTIC distribution (Probability) , *HOST-virus relationships - Abstract
To understand joint effects of logistic growth in target cells and intracellular delay on viral dynamics in vivo, we carry out two-parameter bifurcation analysis of an in-host model that describes infections of many viruses including HIV-I, HBV and HTLV-I. The bifurcation parameters are the mitosis rate r of the target cells and an intracellular delay τ in the incidence of viral infection. We describe the stability region of the chronic-infection equilibrium E* in the two-dimensional ( r, τ) parameter space, as well as the global Hopf bifurcation curves as each of τ and r varies. Our analysis shows that, while both τ and r can destabilize E* and cause Hopf bifurcations, they do behave differently. The intracellular delay τ can cause Hopf bifurcations only when r is positive and sufficiently large, while r can cause Hopf bifurcations even when τ = 0. Intracellular delay τ can cause stability switches in E* while r does not. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
10. Characterization of SARS-CoV-2 dynamics in the host
- Author
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Esteban A. Hernandez-Vargas, Pablo Abuin, Alejandro Anderson, Alejandro H. González, and Antonio Ferramosca
- Subjects
0209 industrial biotechnology ,2019-20 coronavirus outbreak ,Otras Ingenierías y Tecnologías ,Coronavirus disease 2019 (COVID-19) ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Stability (learning theory) ,SARS-COV-2 INFECTION ,INGENIERÍAS Y TECNOLOGÍAS ,Dynamical Systems (math.DS) ,02 engineering and technology ,Computational biology ,Article ,020901 industrial engineering & automation ,Settore ING-INF/04 - Automatica ,Mathematics - Dynamical Systems ,Quantitative Biology ,Populations and Evolution ,SARS-CoV-2 infection ,In-host model ,Equilibrium sets characterization ,Stability analysis ,FOS: Mathematics ,0202 electrical engineering, electronic engineering, information engineering ,Quantitative Biology - Populations and Evolution ,Critical condition ,Mathematical model ,020208 electrical & electronic engineering ,Populations and Evolution (q-bio.PE) ,COVID-19 ,IN-HOST MODEL ,Characterization (materials science) ,Control and Systems Engineering ,FOS: Biological sciences ,EQUILIBRIUM SETS CHARACTERIZATION ,Host (network) ,STABILITY ANALYSIS ,Software - Abstract
While many epidemiological models were proposed to understand and handle COVID-19 pandemic, too little has been invested to understand human viral replication and the potential use of novel antivirals to tackle the infection. In this work, using a control theoretical approach, validated mathematical models of SARS-CoV-2 in humans are characterized. A complete analysis of the main dynamic characteristic is developed based on the reproduction number. The equilibrium regions of the system are fully characterized, and the stability of such regions is formally established. Mathematical analysis highlights critical conditions to decrease monotonically SARS-CoV-2 in the host, as such conditions are relevant to tailor future antiviral treatments. Simulation results show the aforementioned system characterization. Fil: Abuin, Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Desarrollo Tecnológico para la Industria Química. Universidad Nacional del Litoral. Instituto de Desarrollo Tecnológico para la Industria Química; Argentina Fil: Anderson, Alejandro Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Desarrollo Tecnológico para la Industria Química. Universidad Nacional del Litoral. Instituto de Desarrollo Tecnológico para la Industria Química; Argentina Fil: Ferramosca, Antonio. Universidad Tecnológica Nacional; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Hernandez Vargas, Esteban Abelardo. Universidad Nacional Autónoma de México; México Fil: González, Alejandro Hernán. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Desarrollo Tecnológico para la Industria Química. Universidad Nacional del Litoral. Instituto de Desarrollo Tecnológico para la Industria Química; Argentina
- Published
- 2020
11. Stability analysis in COVID-19 within-host model with immune response
- Author
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Alexis Erich S. Almocera, Griselda Quiroz, and Esteban A. Hernandez-Vargas
- Subjects
viruses ,Host model ,Disease ,Biology ,medicine.disease_cause ,01 natural sciences ,Virus ,010305 fluids & plasmas ,Immune system ,Modelling and Simulation ,0103 physical sciences ,medicine ,skin and connective tissue diseases ,010306 general physics ,Pathogen ,Coronavirus ,Numerical Analysis ,SARS-CoV-2 ,Effector ,Applied Mathematics ,fungi ,COVID-19 ,virus diseases ,Modeling and Simulation ,bifurcation ,Immunology ,effector T cell response ,Viral load ,Research Paper ,in-host model - Abstract
Highlights • Mathematical model to represent viral dynamics in COVID-19 patients. • Stability Analysis in COVID-19 Within-Host Model • Bifurcation analysis suggests that the virus replicates fast to overcome T cells., The 2019 coronavirus disease (COVID-19) is now a global pandemic. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is the causative pathogen of COVID-19. Here, we study an in-host model that highlights the effector T cell response to SARS-CoV-2. The stability of a unique positive equilibrium point, with viral load V*, suggests that the virus may replicate fast enough to overcome T cell response and cause infection. This overcoming is the bifurcation point, near which the orders of magnitude for V* can be sensitive to numerical changes in the parameter values. Our work offers a mathematical insight into how SARS-CoV-2 causes the disease.
- Published
- 2021
- Full Text
- View/download PDF
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