144 results on '"Zefirov NS"'
Search Results
2. Ionotropic GABA receptors: modelling and design of selective ligands
- Author
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Palyulin Vladimir A, Radchenko EV, Osolodkin DE, Chupakhin VI, and Zefirov NS
- Subjects
Information technology ,T58.5-58.64 ,Chemistry ,QD1-999 - Published
- 2010
- Full Text
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3. Modelling the multi-target selectivity: o-phosphorylated oximes as serine hydrolase inhibitors
- Author
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Makhaeva GF, Baskin II, Radchenko EV, Palyulin VA, and Zefirov NS
- Subjects
Chemistry ,QD1-999 - Published
- 2009
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4. Molecular field topology analysis and structure generation
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Zefirov NS, Melnikov AA, Radchenko EV, and Palyulin VA
- Subjects
Chemistry ,QD1-999 - Published
- 2008
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5. Modelling the multi-target selectivity: o-phosphorylated oximes as serine hydrolase inhibitors
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Palyulin, VA, Radchenko, EV, Baskin, II, Makhaeva, GF, and Zefirov, NS
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- 2009
- Full Text
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6. Additive inductive learning in QSAR/QSPR studies and molecular modeling
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Baskin, II, Zhokhova, NI, Palyulin, VA, and Zefirov, NS
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- 2009
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7. Molecular field topology analysis and structure generation
- Author
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Palyulin, VA, Radchenko, EV, Melnikov, AA, and Zefirov, NS
- Published
- 2008
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8. [Untitled]
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Abilev Sk, Zefirov Ns, Gal'berstam Nm, Baskin, Paliulin Va, and Liubimova Ik
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Quantum chemical ,Artificial neural network ,Chemistry ,Stereochemistry ,Chemical structure ,fungi ,General Biochemistry, Genetics and Molecular Biology ,Partition coefficient ,Nonlinear system ,Linear regression ,Molecule ,Multiple linear regression analysis ,General Agricultural and Biological Sciences ,Biological system - Abstract
The relationship between mutagenic activity and chemical structure was studied for 54 polycyclic compounds using two approaches: multiple linear regression analysis and artificial neural networks. Structural fragments, quantum chemical indices, and hydrophobicity (octanol–water partition coefficient) were used as descriptors (properties of the molecules introduced in the model). Both linear regression equations and nonlinear relationships obtained with the help of a neural network were shown to accurately predict mutagenic activity for the compounds structurally similar to those in the training sample. The introduction of experimentally selected descriptors is substantiated to verify the proposed mechanism of related compounds mutagenic activity.
- Published
- 2001
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9. Virtual computational chemistry laboratory - design and description
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Tetko, I, Gasteiger, J, Todeschini, R, Mauri, A, Livingstone, D, Ertl, P, Palyulin, V, Radchenko, E, Zefirov, N, Makarenko, A, Tanchuk, V, Prokopenko, V, Tetko, IV, Zefirov, NS, Makarenko, AS, Tanchuk, VY, Prokopenko, VV, TODESCHINI, ROBERTO, Tetko, I, Gasteiger, J, Todeschini, R, Mauri, A, Livingstone, D, Ertl, P, Palyulin, V, Radchenko, E, Zefirov, N, Makarenko, A, Tanchuk, V, Prokopenko, V, Tetko, IV, Zefirov, NS, Makarenko, AS, Tanchuk, VY, Prokopenko, VV, and TODESCHINI, ROBERTO
- Abstract
Internet technology offers an excellent opportunity for the development of tools by the cooperative effort of various groups and institutions. We have developed a multi-platform software system, Virtual Computational Chemistry Laboratory, http://www.vcclab.org, allowing the computational chemist to perform a comprehensive series of molecular indices/properties calculations and data analysis. The implemented software is based on a three-tier architecture that is one of the standard technologies to provide client-server services on the Internet. The developed software includes several popular programs, including the indices generation program, DRAGON, a 3D structure generator, CORINA, a program to predict lipophilicity and aqueous solubility of chemicals, ALOGPS and others. All these programs are running at the host institutes located in five countries over Europe. In this article we review the main features and statistics of the developed system that can be used as a prototype for academic and industry models.
- Published
- 2005
10. Correlation analysis and H-bond ability in framework of QSAR
- Author
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Raevsky, OA, primary, Grigor’ev, VY, additional, Kireev, DB, additional, and Zefirov, NS, additional
- Published
- 1992
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11. Unexpected Heterocyclization of Electrophilic Alkenes by Tetranitromethane in the Presence of Triethylamine. Synthesis of 5-Nitroisoxazoles.
- Author
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Volkova YA, Averina EB, Vasilenko DA, Sedenkova KN, Grishin YK, Bruheim P, Kuznetsova TS, and Zefirov NS
- Abstract
A novel reaction of tetranitromethane with electrophilic alkenes in the presence of triethylamine affording substituted 5-nitroisoxazoles is described. Triethylamine reacts with tetranitromethane to generate N-nitrotriethylammonium and trinitromethanide. This process provides the heterocyclization of electrophilic alkenes. A variety of α,β-unsaturated aldehydes, ketones, esters, amides, phosphonates, nitro, and sulfur compounds was involved in the heterocyclization reaction, and a wide range of functionalized 5-nitroisoxazoles was obtained in good to high yields. The scope and limitations of the reaction and the mechanistic proposal are discussed.
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- 2019
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12. Retraction of "Unexpected Heterocyclization of Electrophilic Alkenes by Tetranitromethane in the Presence of Triethylamine. Synthesis of 3-Nitroisoxazoles".
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Volkova YA, Averina EB, Grishin YK, Bruheim P, Kuznetsova TS, and Zefirov NS
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- 2019
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13. Synthesis and cytotoxicity of novel simplified eleutherobin analogues as potential antitumour agents.
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Sosonyuk SE, Peshich A, Tutushkina AV, Khlevin DA, Lozinskaya NA, Gracheva YA, Glazunova VA, Osolodkin DI, Semenova MN, Semenov VV, Palyulin VA, Proskurnina MV, Shtil AA, and Zefirov NS
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- Adamantane chemistry, Animals, Antineoplastic Agents chemistry, Antineoplastic Agents metabolism, Binding Sites, Cell Line, Tumor, Chemistry Techniques, Synthetic, Diterpenes chemistry, Diterpenes metabolism, Humans, Molecular Docking Simulation, Octanes chemistry, Protein Conformation, Sea Urchins drug effects, Tubulin chemistry, Tubulin metabolism, Antineoplastic Agents chemical synthesis, Antineoplastic Agents pharmacology, Diterpenes chemical synthesis, Diterpenes pharmacology
- Abstract
Mixed simplified structures containing the paclitaxel and eleutherobin pharmacophore moieties were analyzed using molecular docking techniques and synthesized based on adamantane and 8-oxabicyclo[3.2.1]octane scaffolds. The crucial role of substituents' stereochemistry in biological activity is discussed. At micromolar concentrations the selected analogues interfered with tubulin dynamics in vitro and in a living organism. Furthermore, new compounds were cytotoxic against human tumour cell lines. The simplified eleutherobin analogues may be considered as prototypes of a new class of antitumour agents.
- Published
- 2019
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14. Molecular design, synthesis and biological evaluation of cage compound-based inhibitors of hepatitis C virus p7 ion channels.
- Author
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Shiryaev VA, Radchenko EV, Palyulin VA, Zefirov NS, Bormotov NI, Serova OA, Shishkina LN, Baimuratov MR, Bormasheva KM, Gruzd YA, Ivleva EA, Leonova MV, Lukashenko AV, Osipov DV, Osyanin VA, Reznikov AN, Shadrikova VA, Sibiryakova AE, Tkachenko IM, and Klimochkin YN
- Subjects
- Amino Acid Sequence, Antiviral Agents chemical synthesis, Hepacivirus chemistry, Hepacivirus metabolism, Hepatitis C virology, Humans, Molecular Docking Simulation, Sequence Alignment, Small Molecule Libraries chemical synthesis, Small Molecule Libraries chemistry, Small Molecule Libraries pharmacology, Viral Proteins chemistry, Viral Proteins metabolism, Antiviral Agents chemistry, Antiviral Agents pharmacology, Drug Design, Hepacivirus drug effects, Hepatitis C drug therapy, Viral Proteins antagonists & inhibitors
- Abstract
The hepatitis C caused by the hepatitis C virus (HCV) is an acute and/or chronic liver disease ranging in severity from a mild brief ailment to a serious lifelong illness that affects up to 3% of the world population and imposes significant and increasing social, economic, and humanistic burden. Over the past decade, its treatment was revolutionized by the development and introduction into clinical practice of the direct acting antiviral (DAA) agents targeting the non-structural viral proteins NS3/4A, NS5A, and NS5B. However, the current treatment options still have important limitations, thus, the development of new classes of DAAs acting on different viral targets and having better pharmacological profile is highly desirable. The hepatitis C virus p7 viroporin is a relatively small hydrophobic oligomeric viral ion channel that plays a critical role during virus assembly and maturation, making it an attractive and validated target for the development of the cage compound-based inhibitors. Using the homology modeling, molecular dynamics, and molecular docking techniques, we have built a representative set of models of the hepatitis C virus p7 ion channels (Gt1a, Gt1b, Gt1b_L20F, Gt2a, and Gt2b), analyzed the inhibitor binding sites, and identified a number of potential broad-spectrum inhibitor structures targeting them. For one promising compound, the binding to these targets was additionally confirmed and the binding modes and probable mechanisms of action were clarified by the molecular dynamics simulations. A number of compounds were synthesized, and the tests of their antiviral activity (using the BVDV model) and cytotoxicity demonstrate their potential therapeutic usefulness and encourage further more detailed studies. The proposed approach is also suitable for the design of broad-spectrum ligands interacting with other multiple labile targets including various viroporins., (Copyright © 2018 Elsevier Masson SAS. All rights reserved.)
- Published
- 2018
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15. MM-GBSA and MM-PBSA performance in activity evaluation of AMPA receptor positive allosteric modulators.
- Author
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Karlov DS, Lavrov MI, Palyulin VA, and Zefirov NS
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- Allosteric Regulation, Animals, Ligands, Linear Models, Protein Conformation, Rats, Thermodynamics, Molecular Dynamics Simulation, Receptors, AMPA chemistry
- Published
- 2018
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16. Substituent effects on stereoselectivity of dihalocarbene reactions with cyclohexadiene and on the reactivity of bis-dihalocyclopropanes in electrophilic nitrations en route to pyrimidine N-oxides.
- Author
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Sedenkova KN, Averina EB, Grishin YK, Kolodyazhnaya JV, Rybakov VB, Kuznetsova TS, Hughes A, Gomes GDP, Alabugin IV, and Zefirov NS
- Abstract
Tricyclic bis-adducts of cyclohexa-1,4-diene with bromofluorocarbene and non-symmetric adducts with both bromofluoro- and dichlorocarbenes were synthesised selectively. The treatment of the bis-adducts with nitrating reagents in acetonitrile affords the products of heterocyclization of a sole dihalogenocyclopropane into 4-fluoropyrimidine N-oxide. The difference in the reactivity of bis-cyclopropanes with different sets of halogen substituents leads to selective heterocyclization of bromofluorocyclopropanes without affecting the dichlorocyclopropane moiety.
- Published
- 2017
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17. Oxindole-based intraocular pressure reducing agents.
- Author
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Zaryanova EV, Lozinskaya NA, Beznos OV, Volkova MS, Chesnokova NB, and Zefirov NS
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- Crystallography, X-Ray, Dose-Response Relationship, Drug, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors chemistry, Humans, Indoles chemical synthesis, Indoles chemistry, Ligands, Models, Molecular, Molecular Structure, Oxindoles, Quinone Reductases metabolism, Structure-Activity Relationship, Time Factors, Enzyme Inhibitors pharmacology, Indoles pharmacology, Intraocular Pressure drug effects, Quinone Reductases antagonists & inhibitors
- Abstract
The study represents the new findings at the crossroads of chemistry and medicine, particularly between medicinal and organic chemistry and ophthalmology. In this work we describe how the chemical reactivity of indolinone scaffold may be used to create small molecule ligands with strong biological response comparable with and larger than that of endogenous hormone. The synthesis of oxindole-based melatonin and 5-methoxycarbonylamino-N-acetyltryptamine (5-MCA-NAT) analogues was proposed and their ability to influence intraocular pressure (IOP) was studied in vivo. Time-dependent study revealed the prolonged effect (more than 6h) of the lead-compound. This effect in combination with high IOP reducing effect (41±6%) in low concentrations of the active compound (0.1wt%) and with high water solubility represents a great potential of low-cost oxindole derivatives as potent antiglaucoma agents., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2017
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18. Novel antimitotic agents related to tubuloclustin: synthesis and biological evaluation.
- Author
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Zefirova ON, Nurieva EV, Wobith B, Gogol VV, Zefirov NA, Ogonkov AV, Shishov DV, Zefirov NS, and Kuznetsov SA
- Subjects
- A549 Cells, Adamantane chemistry, Antimitotic Agents chemistry, Antimitotic Agents pharmacology, Cell Proliferation drug effects, Cell Survival drug effects, Colchicine chemistry, Humans, Models, Molecular, Molecular Structure, Tubulin chemistry, Adamantane analogs & derivatives, Antimitotic Agents chemical synthesis, Colchicine analogs & derivatives, Tubulin metabolism
- Abstract
Tubuloclustin [N-(7-adamant-2-yloxy-7-oxoheptanoyl)-N-deacetylcolchicine], a highly cytotoxic anti-tubulin compound is known for its ability to promote microtubule disassembly followed by the formation of tubulin clusters of unique morphology. Three series of antimitotic agents related to tubuloclustin were designed and synthesized in order to enhance the molecular diversity of "tubuloclustin-like" family of compounds. The series of compounds with modified adamantane moiety was highly potent in cytotoxic effect on human lung carcinoma A549 cells (EC50 = 6-400 nM) and was active in affecting the microtubule arrays and induction of strong tubulin clusterization. In two other sets of compounds, the colchicine moiety of tubuloclustin was replaced by podophyllotoxin or combretastatin A-4. All combretastatin A-4 derivatives displayed noticeable cytotoxic activity ([Formula: see text]) but their effect on microtubules depended on the position of the linker attachment. Podophyllotoxin derivatives were also toxic to A549 cells ([Formula: see text]) and caused both microtubule depolymerization and some tubulin clustering. The data obtained gave additional evidence that the whole panel of C7-colchicine, podophyllotoxin and combretastatin derivatives could manifest clustering effect, and the strength of this effect correlated with cytotoxic activity of the compounds.
- Published
- 2017
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19. Threshold concentration in the nonlinear absorbance law.
- Author
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Tolbin AY, Pushkarev VE, Tomilova LG, and Zefirov NS
- Abstract
A new nonlinear relationship of the absorption coefficient with the concentration was proposed, allowing the calculation of the threshold concentration, which shows that there is a deviation from the Beer-Lambert law. The nonlinear model was successfully tested on a stable dimeric phthalocyanine ligand of J-type in solvents with different polarity. It was shown that deviation from the linearity is connected with a specific association of the macrocyclic molecules, which, in the case of non-polar solvents, leads to the formation of H-aggregates composed of J-type dimeric molecules. The aggregation number was estimated to be less than 1.5, which has allowed us to conduct a series of analytical experiments in a wide range of concentrations (1 × 10
-6 -5 × 10-4 mol L-1 ).- Published
- 2017
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20. Molecular design of proneurogenic and neuroprotective compounds-allosteric NMDA receptor modulators.
- Author
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Karlov DS, Radchenko EV, Palyulin VA, and Zefirov NS
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- Allosteric Regulation drug effects, Humans, Models, Molecular, Protein Conformation, Drug Design, Neurogenesis drug effects, Neuroprotective Agents pharmacology, Receptors, N-Methyl-D-Aspartate chemistry, Receptors, N-Methyl-D-Aspartate metabolism
- Abstract
N-Methyl-D-aspartic acid (NMDA) receptor is a promising target for treatment of neurodegenerative diseases and other brain disorders as well as for designing proneurogenic compounds able to stimulate neurogenesis in adult brain. We analyzed the structure of the binding site of negative allosteric modulators in the amino-terminal domain of the NMDA receptor and identified possible modes of their binding as well as performed molecular design of new modulators that significantly differ from the known ones in structure and binding mode. In addition, we formed a focused library of chemical compounds with potential neuroprotective and proneurogenic properties, desirable set of pharmacokinetic properties, and low toxicity, which can be the basis for development of new-generation drugs.
- Published
- 2017
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21. Computer-aided estimation of the hERG-mediated cardiotoxicity risk of potential drug components.
- Author
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Radchenko EV, Rulev YA, Safanyaev AY, Palyulin VA, and Zefirov NS
- Subjects
- Databases, Pharmaceutical, Humans, Risk, Cardiotoxicity etiology, Cardiotoxicity metabolism, Computational Biology, ERG1 Potassium Channel metabolism
- Abstract
The hERG potassium channel is one of the most important anti-targets determining cardiotoxicity of potential drugs. Using fragmental descriptors and artificial neural networks, the predictive models of the relationship between the structure of organic compounds and their activity with respect to hERG were built, and the structural factors affecting it were analyzed. By their predictive ability and applicability domain, these models (N = 1000, Q
2 = 0.77, RMSEcv = 0.45 for affinity and N = 2886, Q2 = 0.60, RMSEcv = 0.55 for channel inhibition) are superior to the previously published models and can be used to minimize the risk of cardiotoxicity during drug development.- Published
- 2017
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22. Complex formation of albumin with tricarbocyanine dyes containing phosphonate groups.
- Author
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Kuzmin VA, Nekipelova TD, Podrugina TA, Golovina GV, Kostyukov AA, Temnov VV, Doroshenko IA, Radchenko EV, Palyulin VA, and Zefirov NS
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- Animals, Binding Sites, Humans, Protein Binding, Serum Albumin, Bovine chemistry, Serum Albumin, Bovine metabolism, Spectrometry, Fluorescence, Coloring Agents chemistry, Coloring Agents metabolism, Organophosphonates chemistry, Organophosphonates metabolism, Serum Albumin chemistry, Serum Albumin metabolism
- Abstract
The spectral characteristics, binding constants with bovine (BSA) and human serum albumin (HSA) and lifetimes of fluorescence in PBS and EtOH solutions and in the presence of BSA in PBS were measured for novel indotricarbocyanine dyes bearing remote phosphonate groups. These parameters are close to those for indocyanine green (ICG) indicating that the Coulomb interaction does not play a significant role in complex formation, and the binding is determined by the interaction of the dye polymethine chain with albumin. The fluorescence lifetimes of the complexes with BSA strongly indicate the formation of complexes of two types with different lifetimes. The complex with a longer fluorescence lifetime (740-800 ps) and major contribution (up to 88%) is bound to the more hydrophobic site and that with a shorter fluorescence lifetime (300-340 ps) to the more hydrophilic site.
- Published
- 2016
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23. Control of Azomethine Cycloaddition Stereochemistry by CF3 Group: Structural Diversity of Fluorinated β-Proline Dimers.
- Author
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Kudryavtsev KV, Mantsyzov AB, Ivantcova PM, Sokolov MN, Churakov AV, Bräse S, Zefirov NS, and Polshakov VI
- Abstract
β-Proline-functionalized dimers consisting of homochiral monomeric units were synthesized by a non-peptidic coupling method for the first time. The applied synthetic methodology is based on 1,3-dipolar cycloaddition chemistry of azomethine ylides and provides absolute control over the β-proline backbone stereogenic centers. An o-(trifluoromethyl)phenyl substituent contributes to appropriate stabilization of the definite acrylamide chiral cis conformation and to achieve the dipole reactivity that is not observed for aryl groups lacking strong electronegative character.
- Published
- 2016
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24. Prediction of blood-brain barrier permeability of organic compounds.
- Author
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Dyabina AS, Radchenko EV, Palyulin VA, and Zefirov NS
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- Animals, Drug Discovery methods, Models, Cardiovascular, Models, Chemical, Models, Neurological, Molecular Structure, Organic Chemicals chemistry, Blood-Brain Barrier metabolism, Capillary Permeability, Neural Networks, Computer, Organic Chemicals pharmacokinetics
- Abstract
Using fragmental descriptors and artificial neural networks, a predictive model of the relationship between the structure of organic compounds and their blood-brain barrier permeability was constructed and the structural factors affecting the readiness of this penetration were analyzed. This model (N = 529, Q
2 = 0.82, RMSEcv = 0.32) surpasses the previously published models in terms of the prediction accuracy and the applicability domain and can be used for the optimization of the pharmacokinetic parameters during drug development.- Published
- 2016
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25. Thermally stable J-type phthalocyanine dimers as new non-linear absorbers for low-threshold optical limiters.
- Author
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Tolbin AY, Savelyev MS, Gerasimenko AY, Tomilova LG, and Zefirov NS
- Abstract
The possibility of developing new advanced optical limiters of laser radiation at 532 nm with low limiting thresholds has been demonstrated on thermally stable phthalocyanine J-type dimeric complexes of Mg, Zn, Cu, Ni, and Co. A new "threshold" model based on radiative transfer phenomena in nonlinear optical media was suggested for the exact definition of nonlinear absorption coefficient β and optical limiting threshold Ic. This model allows the determination of the optical characteristics of the limiter in the same active material with layers of different thicknesses, as well as the use of different parameters of laser radiation, such as cross-sectional spatial profiles of the laser beam and shapes of the laser pulse over time. The maximum value of the nonlinear absorption coefficient (β = 360 cm GW(-1)) and the lowest limiting threshold (Ic = 0.03 J cm(-2)) were estimated for a J-type zinc phthalocyanine dimer.
- Published
- 2016
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26. Beyond the Dimer and Trimer: Tetraspiro[2.1.2(5).1.2(9).1.2(13).1(3)] hexadecane-1,3,5,7-tetraone--the Cyclic Tetramer of Carbonylcyclopropane.
- Author
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Sedenkova KN, Averina EB, Grishin YK, Andriasov KS, Stepanova SA, Roznyatovsky VA, Kutateladze AG, Rybakov VB, Albov DV, Kuznetsova TS, and Zefirov NS
- Abstract
Tetraspiro[2.1.2(5).1.2(9).1.2(13).1(3)]hexadecane-1,3,5,7-tetraone 4, a unique tetraketone containing a cyclooctane core and four spiroannelated cyclopropane moieties, represents the previously unknown cyclotetramer of carbonylcyclopropane. For this purpose oxidation of the parent polyspirocyclic hydrocarbon was examined under various oxidative conditions, and the reactivity of oxidants towards methylene groups of the eight-membered cycle, activated by adjacent spirocyclopropane rings, was evaluated and contrasted. Whereas the treatment of tetraspirohexadecane with ozone resulted in monooxidation, its reaction with methyl(trifluoromethyl)dioxirane afforded the product of four-fold oxidation, triketoalcohol 10. Subsequent oxidation of the latter with Dess-Martin periodinane gave the target tetraketone 4., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2016
- Full Text
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27. Synthesis and biological evaluation of novel 5-hydroxylaminoisoxazole derivatives as lipoxygenase inhibitors and metabolism enhancing agents.
- Author
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Averina EB, Vasilenko DA, Gracheva YA, Grishin YK, Radchenko EV, Burmistrov VV, Butov GM, Neganova ME, Serkova TP, Redkozubova OM, Shevtsova EF, Milaeva ER, Kuznetsova TS, and Zefirov NS
- Subjects
- Animals, Antimycin A pharmacology, Biphenyl Compounds antagonists & inhibitors, Brain cytology, Brain drug effects, Brain enzymology, Cell Line, Tumor, Free Radical Scavengers pharmacology, Humans, Isoxazoles pharmacology, Lipid Peroxidation drug effects, Lipoxygenase Inhibitors pharmacology, Membrane Potential, Mitochondrial drug effects, Mitochondria enzymology, Neurons cytology, Neurons enzymology, Oligomycins pharmacology, Picrates antagonists & inhibitors, Primary Cell Culture, Rats, Glycine max chemistry, Glycine max enzymology, Structure-Activity Relationship, Free Radical Scavengers chemical synthesis, Isoxazoles chemical synthesis, Lipoxygenase metabolism, Lipoxygenase Inhibitors chemical synthesis, Mitochondria drug effects, Neurons drug effects
- Abstract
A versatile synthesis of novel 5-hydroxylaminoisoxazoles bearing adamantane moieties has been accomplished using the heterocyclization reactions of readily available unsaturated esters by the treatment with tetranitromethane in the presence of triethylamine and subsequent reduction of resulting 5-nitroisoxazoles by SnCl2 with the participation of THF. A number of obtained isoxazole derivatives were evaluated for their antioxidative activity, inhibition of lipoxygenases and impact on the rat liver mitochondria. The majority of tested compounds demonstrated moderate antiradical activity in DPPH test (up to EC50 16μM). The same compounds strongly inhibited soybean lipoxygenase (up to IC50 0.4μM) and Fe(2+)- and Fe(3+)-induced lipid peroxidation (LP) of rat brain cortex homogenate (up to IC50 0.3μM). All tested isoxazole derivatives promoted the phosphorylating respiratory activity simultaneously with maximal stimulated respiratory activity of mitochondria and do not reveal any toxicity towards the primary culture of rat cortex neurons., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
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28. Design of Broad-Spectrum Inhibitors of Influenza A Virus M2 Proton Channels: A Molecular Modeling Approach.
- Author
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Klimochkin YN, Shiryaev VA, Petrov PV, Radchenko EV, Palyulin VA, and Zefirov NS
- Subjects
- Antiviral Agents chemistry, Binding Sites drug effects, Antiviral Agents pharmacology, Drug Design, Influenza A virus drug effects, Influenza A virus metabolism, Molecular Docking Simulation, Molecular Dynamics Simulation, Viral Matrix Proteins antagonists & inhibitors
- Abstract
Background: The influenza A virus M2 proton channel plays a critical role in its life cycle. However, known M2 inhibitors have lost their clinical efficacy due to the spread of resistant mutant channels. Thus, the search for broad-spectrum M2 channel inhibitors is of great importance., Objective: The goal of the present work was to develop a general approach supporting the design of ligands interacting with multiple labile targets and to propose on its basis the potential broad-spectrum inhibitors of the M2 proton channel., Method: The dynamic dimer-of-dimers structures of the three primary M2 target variants, wild-type, S31N and V27A, were modeled by molecular dynamics and thoroughly analyzed in order to define the inhibitor binding sites. The potential inhibitor structures were identified by molecular docking and their binding was verified by molecular dynamics simulation., Results: The binding sites of the M2 proton channel inhibitors were analyzed, a number of potential broad-spectrum inhibitors were identified and the binding modes and probable mechanisms of action of one promising compound were clarified., Conclusion: Using the molecular dynamics and molecular docking techniques, we have refined the dynamic dimer-ofdimers structures of the WT, S31N and V27A variants of the M2 proton channel of the influenza A virus, analyzed the inhibitor binding sites, identified a number of potential broad-spectrum inhibitor structures targeting them, and clarified the binding modes and probable mechanisms of action of one promising compound. The proposed approach is also suitable for the design of ligands interacting with other multiple labile targets.
- Published
- 2016
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29. Menthols as Chiral Auxiliaries for Asymmetric Cycloadditive Oligomerization: Syntheses and Studies of β-Proline Hexamers.
- Author
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Kudryavtsev KV, Ivantcova PM, Muhle-Goll C, Churakov AV, Sokolov MN, Dyuba AV, Arutyunyan AM, Howard JA, Yu CC, Guh JH, Zefirov NS, and Bräse S
- Subjects
- Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Azo Compounds chemistry, Catalysis, Cycloaddition Reaction, Drug Screening Assays, Antitumor, Humans, Male, Molecular Structure, Proline chemical synthesis, Proline chemistry, Proline pharmacology, Protein Structure, Secondary, Stereoisomerism, Thiosemicarbazones chemistry, Antineoplastic Agents chemical synthesis, Menthol chemistry, Proline analogs & derivatives
- Abstract
To produce a novel class of structurally ordered poly-β-prolines, an emergent method for synthesizing chiral β-peptide molecular frameworks was developed based on 1,3-dipolar cycloaddition chemistry of azomethine ylides. Functionalized short β-peptides with up to six monomeric residues were efficiently synthesized in homochiral forms using a cycloadditive oligomerization approach. X-ray, NMR, and CD structural analyses of the novel β-peptides revealed secondary structure features that were generated primarily by Z/E-β-peptide bond isomerism. Anticancer in cellulo activity of the new β-peptides toward hormone-refractory prostate cancer cells was observed and was dependent on the absolute configuration of the stereogenic centers and the chain length of the β-proline oligomers.
- Published
- 2015
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30. meso-Phenyltetrabenzotriazaporphyrin based double-decker lanthanide(III) complexes: synthesis, structure, spectral properties and electrochemistry.
- Author
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Pushkarev VE, Kalashnikov VV, Tolbin AY, Trashin SA, Borisova NE, Simonov SV, Rybakov VB, Tomilova LG, and Zefirov NS
- Abstract
A series of half-sandwich and sandwich-type lanthanide(III) complexes have been prepared using tetrabenzotriazaporphyrin ligands. Reaction of 27-phenyl-29H,31H-tetrabenzo[b,g,l,q][5,10,15]-triazaporphyrin (PhTBTAPH2, 1) with salts [LnX3]·nH2O (Ln = Eu (a), Lu (b); X = OAc, acac) afforded the single- and homoleptic double-deckers (PhTBTAP)LnOAc (2) and (PhTBTAP)2Ln (3) respectively. Heteroleptic double-decker compounds (PhTBTAP)LnPc (4a,b) were obtained upon interaction of 1 with the corresponding Ln mono(phthalocyaninates). An unexpected formation of partially and completely dephenylated co-products 5 and 6 has been detected in the synthesis of sandwich 3, while the possibility of the dearylation of the half-sandwich compound 2 has been demonstrated as well. A more predictable yet firstly observed formation of the triple-decker compound (PhTBTAP)3Eu2 (7) has also been found. Structural studies of 3 supported by 1H NMR spectra, XRD analysis and DFT theoretical calculations reveal that the Eu complex 3a is formed as a single isomer, while the lutetium compound 3b represents an inseparable mixture of two rotational isomers with virtually identical spectral characteristics. The double-decker compounds 3 and 4 reveal intrinsic UV-Vis/NIR absorption as well as peculiar electrochromic behavior. The heteroleptic derivatives 4 generally show intermediate spectral and electrochemical properties with respect to their homoleptic relatives.
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- 2015
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31. Perspectives of Halogen Bonding Description in Scoring Functions and QSAR/QSPR: Substituent Effects in Aromatic Core.
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Titov OI, Shulga DA, Palyulin VA, and Zefirov NS
- Subjects
- Halogens chemistry, Molecular Docking Simulation
- Abstract
Halogen bonding (XB) is a new promising interaction pattern in medicinal chemistry. It has predominantly electrostatic nature - high electrostatic potential anisotropy. However to fully unleash the potential of XB in rational drug design fast and robust empirical methods of XB description should be developed. Current approaches rely heavily on ab initio calculation for each molecule studied. Thus fast prediction of electrostatic parameters for description of XB for arbitrary organic molecules is of paramount importance to promptly establish QSAR/QSPR, virtual screening and molecular docking pipelines suitable for today's agile development requirements. The two most promising approaches to describe anisotropic electrostatic models - the extra point (EP) charge model and the multipole expansion (ME) model - were studied on their ability (1) to describe ab initio molecular electrostatic potential (MEP) and (2) to produce parameters that can be predicted for each molecule empirically rather than estimated via ab initio calculations. The reference ab initio MEP was calculated for a set of 730 substituted halobenzenes. Parameters for anisotropic electrostatics of both empirical models (EP and ME) studied were extracted from ab initio MEP. The FreeWilson and Hansch type QSPR models relating XB parameters with aromatic substituents were built and analyzed, providing the guidelines for further development., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
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- 2015
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32. Heteroleptic naphthalo-phthalocyaninates of lutetium: synthesis and spectral and conductivity properties.
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Dubinina TV, Kosov AD, Petrusevich EF, Maklakov SS, Borisova NE, Tomilova LG, and Zefirov NS
- Abstract
Novel heteroleptic naphthalo-phthalocyaninates of lutetium possessing a symmetrical substituted naphthalocyanine deck were synthesized on the basis of two preformed synthetic blocks: naphthalocyanine ligand and lutetium phthalocyaninates. The compounds obtained were characterized by (1)H NMR and high-resolution MALDI-TOF/TOF mass spectrometry. The correlation between the nature of the substituents and the spectral properties of the target complexes was determined by the introduction of electron-donating (aryl-, aryloxy-) or electron-withdrawing (chloro-) substituents into the phthalocyanine deck. In addition, the nature of peripheral substituents was shown not to affect drastically the phthalocyanine conductivity and activation energy. Conductivity properties depend on thin film morphology which, in turn, relies on intermolecular π-π interactions.
- Published
- 2015
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33. Synthesis and assessment of 4-aminotetrahydroquinazoline derivatives as tick-borne encephalitis virus reproduction inhibitors.
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Sedenkova KN, Dueva EV, Averina EB, Grishin YK, Osolodkin DI, Kozlovskaya LI, Palyulin VA, Savelyev EN, Orlinson BS, Novakov IA, Butov GM, Kuznetsova TS, Karganova GG, and Zefirov NS
- Subjects
- Animals, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Cell Line, Cell Survival drug effects, Dose-Response Relationship, Drug, Encephalitis Viruses, Tick-Borne growth & development, Humans, Microbial Sensitivity Tests, Molecular Docking Simulation, Molecular Structure, Quinazolines chemical synthesis, Quinazolines chemistry, Structure-Activity Relationship, Swine, Antiviral Agents pharmacology, Encephalitis Viruses, Tick-Borne drug effects, Quinazolines pharmacology
- Abstract
Tick-borne encephalitis virus (TBEV) belonging to Flavivirus genus causes severe infection in humans. The search for therapeutically relevant compounds targeting TBEV requires the exploration of novel chemotypes. A versatile synthesis of previously unknown 4-aminopyrimidines and 4-aminopyrimidine N-oxides based on a fluorosubstituted heterocyclic core is described. A representative series of 4-aminotetrahydroquinazoline derivatives, containing aliphatic and aromatic substituents as well as the adamantane framework, was obtained and their activity against tick-borne encephalitis virus reproduction was studied. Nine compounds were found to inhibit TBEV entry into the host cells. A bulky hydrophobic adamantyl group was identified to be important for the antiviral activity. The developed synthetic route allowed an easy access to a consistent compound library for further structure-activity relationship studies.
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- 2015
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34. Structural studies and anticancer activity of a novel class of β-peptides.
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Kudryavtsev KV, Yu CC, Ivantcova PM, Polshakov VI, Churakov AV, Bräse S, Zefirov NS, and Guh JH
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- Antineoplastic Agents chemical synthesis, Antineoplastic Agents toxicity, Apoptosis drug effects, Caspases metabolism, Cell Cycle Checkpoints drug effects, Cell Line, Tumor, Cycloaddition Reaction, Humans, Membrane Potential, Mitochondrial drug effects, Peptides chemical synthesis, Peptides toxicity, Proline analogs & derivatives, Proline chemistry, Protein Conformation, Stereoisomerism, Antineoplastic Agents chemistry, Peptides chemistry
- Abstract
Functionalized oligomeric organic compounds with well-defined β-proline scaffold have been synthesized by a cycloadditive oligomerization approach in racemic and enantiopure forms. The structure of the novel β-peptides was investigated by NMR spectroscopic and X-ray methods determining the conformational shapes of the β-proline oligomers in solution and solid states. The main structural elements subject to conformational switches are β-peptide bonds between 5-arylpyrrolidine-2-carboxylic acid units existing in Z/E configurations. The whole library of short β-peptides and intermediate acrylamides has been tested on antiproliferative activity towards the hormone-refractory prostate cancer cell line PC-3 revealing several oligomeric compounds with low micromolar and submicromolar activities. Bromine-substituted dimeric and trimeric acrylamides induced caspase-dependent apoptosis of PC-3 cells through cell-cycle arrest and mitochondrial damage., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
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- 2015
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35. Progress in visual representations of chemical space.
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Osolodkin DI, Radchenko EV, Orlov AA, Voronkov AE, Palyulin VA, and Zefirov NS
- Subjects
- Databases, Chemical, Drug Discovery methods, Humans, Principal Component Analysis, Small Molecule Libraries, Structure-Activity Relationship, Drug Design, Models, Chemical
- Abstract
Introduction: The concept of 'chemical space' reveals itself in two forms: the discrete set of all possible molecules, and multi-dimensional descriptor space encompassing all the possible molecules. Approaches based on this concept are widely used for the analysis and enumeration of compound databases, library design, and structure-activity relationships (SAR) and landscape studies. Visual representations of chemical space differ in their applicability domains and features and require expert knowledge for choosing the right tool for a particular problem., Areas Covered: In this review, the authors present recent advances in visualization of the chemical space in the framework of current general understanding of this topic. Attention is given to such methods as van Krevelen diagrams, descriptor plots, principal components analysis (PCA), self-organizing maps (SOM), generative topographic mapping (GTM), graph and network-based approaches. Notable application examples are provided., Expert Opinion: With the growth of computational power, representations of large datasets are becoming more and more common instruments in the toolboxes of chemoinformaticians. Every scientist in the field can find the method of choice for a particular task. However, there is no universal reference representation of the chemical space currently available and expert knowledge is required.
- Published
- 2015
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36. Novel bivalent positive allosteric modulators of AMPA receptor.
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Lavrov MI, Grigor'ev VV, Bachurin SO, Palyulin VA, and Zefirov NS
- Subjects
- Allosteric Regulation, Animals, Bridged Bicyclo Compounds chemistry, Bridged Bicyclo Compounds pharmacology, Cells, Cultured, Computer-Aided Design, Drug Design, Excitatory Amino Acid Agents chemistry, Ligands, Membrane Potentials drug effects, Molecular Docking Simulation, Molecular Structure, Neuroprotective Agents chemistry, Nootropic Agents chemistry, Patch-Clamp Techniques, Purkinje Cells drug effects, Purkinje Cells physiology, Rats, Software, Excitatory Amino Acid Agents pharmacology, Neuroprotective Agents pharmacology, Nootropic Agents pharmacology, Receptors, AMPA metabolism
- Abstract
A positive allosteric modulator of AMPA receptors has been designed using computer-aided molecular modeling techniques. It possessed a record high experimentally confirmed potency in the picomolar concentration range and belongs to a new type of bivalent AMPA receptor ligands containing bicyclo[3.3.1]nonane scaffold. The suggested structure could serve as a basis for further optimization and development of drugs for the treatment of neurodegenerative diseases, cognition enhancement, and improvement of memory.
- Published
- 2015
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37. Molecular design of selective ligands of chemokine receptors.
- Author
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Kurilo MN, Ryzhkov FV, Karpov PV, Radchenko EV, Palyulin VA, and Zefirov NS
- Subjects
- Databases, Chemical, Drug Design, Hydrogen Bonding, Hydrophobic and Hydrophilic Interactions, Ligands, Models, Molecular, Models, Neurological, Molecular Structure, Immunologic Factors chemistry, Immunologic Factors pharmacology, Receptors, Chemokine metabolism
- Published
- 2015
- Full Text
- View/download PDF
38. Interaction of Flaviviruses with Reproduction Inhibitors Binding in β-OG Pocket: Insights from Molecular Dynamics Simulations.
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Dueva EV, Osolodkin DI, Kozlovskaya LI, Palyulin VA, Pentkovski VM, and Zefirov NS
- Abstract
Flaviviral diseases, including dengue fever, West Nile fever, yellow fever, tick-borne encephalitis, Omsk haemorrhagic fever, and Powassan encephalitis, threaten human health all over the world. Lack of effective antivirals targeting replication cycle of flaviviruses makes the search of such compounds a challenging task. Recently we have identified a reproduction inhibitor effective against tick-borne encephalitis virus and Powassan virus (POWV) (ACS Med. Chem. Lett., 2013, 4, 869-874). To enable using this inhibitor as a template for 3D pharmacophore search, a biologically active conformation of this molecule should have been established. Here we performed molecular dynamics simulations of the complexes between the different enantiomers of the inhibitor and POWV envelope (E) proteins, putative targets of the inhibitor, in the different protonation states corresponding to the different stages of membrane fusion process. Several stable conformations of the inhibitor were identified, opening routes for further design of more advanced molecules., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
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39. symm-Tetramethylenecyclooctane: en route to polyspirocycles.
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Averina EB, Sedenkova KN, Bakhtin SG, Grishin YK, Kutateladze AG, Roznyatovsky VA, Rybakov VB, Butov GM, Kuznetsova TS, and Zefirov NS
- Subjects
- Adamantane chemistry, Bridged Bicyclo Compounds chemistry, Cyclooctanes chemistry, Indicators and Reagents chemistry, Magnetic Resonance Spectroscopy, Molecular Structure, Quantum Theory, Adamantane analogs & derivatives, Bridged Bicyclo Compounds chemical synthesis, Cyclooctanes chemical synthesis, Dicarboxylic Acids chemistry, Spiro Compounds chemistry
- Abstract
A straightforward gram-scale synthesis of 1,3,5,7-tetrakis(methylidene)cyclooctane (TMCO) from commercial adamantane-1,3-dicarboxylic acid has been developed. TMCO exhibits high reactivity toward a number of carbenes and epoxidizing reagents, undergoing multiple cyclopropanations, dihalocyclopropanations, or epoxidations of four double bonds to yield polyspirocyclic products. Stereochemical features of polyspirocyclopropanated compounds have been thoroughly examined in experimental (NMR) and theoretical (DFT) studies. Comprehensive stereochemical assignment of TMCO adducts with dihalocarbenes and spiroepoxy products was achieved. The conditions of the formation of 1-methyl-3,7-bis(methylidene)bicyclo[3.3.1]nonane from the adamantane derivative were optimized, and diadducts of this diene with dihalocarbenes were isolated and characterized.
- Published
- 2014
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40. Mixed valence copper(I,II) binuclear complexes with unexpected structure: synthesis, biological properties and anticancer activity.
- Author
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Majouga AG, Zvereva MI, Rubtsova MP, Skvortsov DA, Mironov AV, Azhibek DM, Krasnovskaya OO, Gerasimov VM, Udina AV, Vorozhtsov NI, Beloglazkina EK, Agron L, Mikhina LV, Tretyakova AV, Zyk NV, Zefirov NS, Kabanov AV, and Dontsova OA
- Subjects
- Animals, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Cell Line, Tumor, Cell Proliferation drug effects, Crystallography, X-Ray, DNA Damage, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, HEK293 Cells, Hep G2 Cells, Humans, MCF-7 Cells, Mice, Mice, Inbred C57BL, Models, Molecular, Molecular Structure, Neoplasms, Experimental pathology, Organometallic Compounds chemical synthesis, Organometallic Compounds chemistry, Structure-Activity Relationship, Antineoplastic Agents pharmacology, Copper chemistry, Neoplasms, Experimental drug therapy, Organometallic Compounds pharmacology
- Abstract
We have synthesized and characterized a panel of new binuclear mixed valence Cu(I,II) complexes containing substituted 2-alkylthio-5-arylmethylene-4H-imidazolin-4-ones with unusual structure. These complexes are shown to be cytotoxic for various cell lines. We have found that these compounds did not intercalate DNA, inhibited number of polymerases (telomerase predominantly), accumulated in the cell nucleus, and caused DNA degradation. Preliminary studies revealed that lead compound inhibited human breast adenocarcinoma growth in mice model.
- Published
- 2014
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- View/download PDF
41. Novel near-IR absorbing phenyl-substituted phthalo- and naphthalocyanine complexes of lanthanide(III): synthesis and spectral and electrochemical properties.
- Author
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Dubinina TV, Paramonova KV, Trashin SA, Borisova NE, Tomilova LG, and Zefirov NS
- Subjects
- Absorption, Chemistry Techniques, Synthetic, Electrochemistry, Models, Molecular, Molecular Conformation, Infrared Rays, Lanthanoid Series Elements chemistry, Organometallic Compounds chemical synthesis, Organometallic Compounds chemistry, Spectrum Analysis
- Abstract
A series of novel phenyl-substituted planar and sandwich-type complexes of Eu, Er and Lu with phthalo and naphthalocyanine ligands was obtained. A successful synthesis of dinaphthalocyanines from the ligand is described. A selective synthetic approach to the phenyl-substituted triphthalocyanine complexes from the ligand and acetylacetonate salts of lanthanides was developed. Correlations between the ionic radii of the central metal and absorption maxima were obtained for sandwich-type complexes. It was found that intervalence (IV) bands for dinaphthalocyanine complexes were red-shifted about 200 nm in comparison with corresponding diphthalocyanines, reaching 1797 nm for the Eu complex. The electrochemical behaviour of planar and sandwich-type Lu complexes was investigated. For the first time a spectroelectrochemical study of multistep reduction and oxidation processes for a triple-decker complex was carried out using the example of the triphthalocyanine of Lu. The structures of the compounds obtained were determined by (1)H NMR and high resolution MALDI TOF/TOF. The first single-crystal structure for an aryl-substituted double-decker complex was described using the example of the diphthalocyanine of Lu, showing the presence of intramolecular π-π interactions between phenyl groups.
- Published
- 2014
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42. Pharmacological correction of stress-induced gastric ulceration by novel small-molecule agents with antioxidant profile.
- Author
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Kudryavtsev KV, Markevich AO, Virchenko OV, Falalyeyeva TM, Beregova TV, Ostapchenko LI, Zabolotnev DV, and Zefirov NS
- Subjects
- Animals, Dose-Response Relationship, Drug, Gastric Mucosa metabolism, Rats, Stomach Ulcer etiology, Stress, Psychological complications, Stress, Psychological drug therapy, Treatment Outcome, Antioxidants administration & dosage, Gastric Mucosa drug effects, Gastric Mucosa pathology, Reactive Oxygen Species metabolism, Stomach Ulcer metabolism, Stomach Ulcer prevention & control, Stress, Psychological metabolism
- Abstract
This study was designed to determine novel small-molecule agents influencing the pathogenesis of gastric lesions induced by stress. To achieve this goal, four novel organic compounds containing structural fragments with known antioxidant activity were synthesized, characterized by physicochemical methods, and evaluated in vivo at water immersion restraint conditions. The levels of lipid peroxidation products and activities of antioxidative system enzymes were measured in gastric mucosa and correlated with the observed gastroprotective activity of the active compounds. Prophylactic single-dose 1 mg/kg treatment with (2-hydroxyphenyl)thioacetyl derivatives of L-lysine and L-proline efficiently decreases up to 86% stress-induced stomach ulceration in rats. Discovered small-molecule antiulcer agents modulate activities of gastric mucosa tissue superoxide dismutase, catalase, and xanthine oxidase in concerted directions. Gastroprotective effect of (2-hydroxyphenyl)thioacetyl derivatives of L-lysine and L-proline at least partially depends on the correction of gastric mucosa oxidative balance.
- Published
- 2014
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- View/download PDF
43. Molecular modeling of the transmembrane domain of mGluR2 metabotropic glutamate receptor and the binding site of its positive allosteric modulators.
- Author
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Radchenko EV, Karlov DS, Palyulin VA, and Zefirov NS
- Subjects
- Allosteric Regulation, Binding Sites, Drug Design, Protein Structure, Tertiary, Cell Membrane metabolism, Models, Molecular, Receptors, Metabotropic Glutamate chemistry, Receptors, Metabotropic Glutamate metabolism
- Published
- 2014
- Full Text
- View/download PDF
44. Phosphonium-iodonium ylides with heteroatomic groups in the synthesis of annelated P-containing heterocycles.
- Author
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Matveeva ED, Podrugina TA, Taranova MA, Vinogradov DS, Gleiter R, and Zefirov NS
- Subjects
- Heterocyclic Compounds chemistry, Molecular Structure, Heterocyclic Compounds chemical synthesis, Hydrocarbons, Iodinated chemistry, Organophosphonates chemistry
- Abstract
The preparation and chemistry of novel sulfonyl- and phosphoryl-derived λ(3)-iodanes are reported. These compounds with three different heteroatoms attached to a negatively charged C atom represent potentially useful reagents that combine in one molecule the synthetic advantages of a phosphonium ylide and an iodonium salt. Specifically, they can react with a number of acetylenes, leading to hitherto unknown sulfonyl- and phosphoryl-substituted phosphinolines, phosphininothiophenes, and a novel type of annelated P-containing heterocycle--phosphininopyrazole.
- Published
- 2013
- Full Text
- View/download PDF
45. Alternating asymmetric self-induction in functionalized pyrrolidine oligomers.
- Author
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Kudryavtsev KV, Ivantcova PM, Churakov AV, Wiedmann S, Luy B, Muhle-Goll C, Zefirov NS, and Bräse S
- Subjects
- Cycloaddition Reaction, Models, Molecular, Azo Compounds chemistry, Peptides chemistry, Pyrrolidines chemistry, Thiosemicarbazones chemistry
- Published
- 2013
- Full Text
- View/download PDF
46. Bis(tetrabenzotriazaporphyrinato) and (tetrabenzotriazaporphyrinato)(phthalocyaninato) lutetium(III) complexes--novel sandwich-type tetrapyrrolic ligand based NIR absorbing electrochromes.
- Author
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Pushkarev VE, Kalashnikov VV, Trashin SA, Borisova NE, Tomilova LG, and Zefirov NS
- Subjects
- Isoindoles, Ligands, Oxidation-Reduction, Porphyrins chemistry, Spectrophotometry, Infrared, Spectrophotometry, Ultraviolet, Coordination Complexes chemistry, Indoles chemistry, Lutetium chemistry, Pyrroles chemistry
- Abstract
The first sandwich-type complexes have been prepared for tetrabenzotriazaporphyrin ligands. The compounds reveal intrinsic UV-Vis/NIR absorption as well as peculiar electrochromic behavior. The heteroleptic (tetrabenzotriazaporphyrinato)(phthalocyaninato) lutetium derivative shows intermediate spectral and electrochemical properties with respect to homoleptic relatives.
- Published
- 2013
- Full Text
- View/download PDF
47. Unusual tubulin-clustering ability of specifically c7-modified colchicine analogues.
- Author
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Zefirova ON, Lemcke H, Lantow M, Nurieva EV, Wobith B, Onishchenko GE, Hoenen A, Griffiths G, Zefirov NS, and Kuznetsov SA
- Subjects
- Adamantane chemistry, Adamantane pharmacology, Animals, Cells, Cultured, Colchicine chemistry, Cytotoxins chemistry, Cytotoxins pharmacology, Flow Cytometry, Fluorescent Antibody Technique, HeLa Cells, Humans, Mice, Microscopy, Electron, Transmission, Molecular Structure, Protein Binding drug effects, Adamantane analogs & derivatives, Colchicine analogs & derivatives, Colchicine pharmacology, Tubulin metabolism
- Abstract
Highly cytotoxic C7-modified colchicine analogues, exemplified by tubuloclustin, promote microtubule disassembly followed by the formation of very stable tubulin clusters, both in vitro and in cells. The proposed mechanism of action of tubuloclustin and its analogues, beyond that of colchicine, includes additional specific interactions with the α-tubulin subunit., (Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2013
- Full Text
- View/download PDF
48. Inhibitors of tick-borne flavivirus reproduction from structure-based virtual screening.
- Author
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Osolodkin DI, Kozlovskaya LI, Dueva EV, Dotsenko VV, Rogova YV, Frolov KA, Krivokolysko SG, Romanova EG, Morozov AS, Karganova GG, Palyulin VA, Pentkovski VM, and Zefirov NS
- Abstract
Flaviviruses form a large family of enveloped viruses affecting millions of people over the world. To date, no specific therapy was suggested for the infected people, making the treatment exclusively symptomatic. Several attempts were performed earlier for the design of fusion inhibitors for mosquito-borne flaviviruses, whereas for the tick-borne flaviviruses such design had not been performed. We have constructed homology models of envelope glycoproteins of tick-transmitted flaviviruses with the detergent binding pocket in the open state. Molecular docking of substituted 1,4-dihydropyridines and pyrido[2,1-b][1,3,5]thiadiazines was made against these models, and 89 hits were selected for the in vitro experimental evaluation. Seventeen compounds showed significant inhibition against tick-borne encephalitis virus, Powassan virus, or Omsk hemorrhagic fever virus in the 50% plaque reduction test in PEK cells. These compounds identified through rational design are the first ones possessing reproduction inhibition activity against tick-borne flaviviruses.
- Published
- 2013
- Full Text
- View/download PDF
49. Organophosphorus compound esterase profiles as predictors of therapeutic and toxic effects.
- Author
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Makhaeva GF, Radchenko EV, Palyulin VA, Rudakova EV, Aksinenko AY, Sokolov VB, Zefirov NS, and Richardson RJ
- Subjects
- Acetylcholinesterase metabolism, Animals, Butyrylcholinesterase metabolism, Cholinesterase Inhibitors chemistry, Cholinesterase Inhibitors pharmacology, Cholinesterase Inhibitors toxicity, Drug Design, Drug Evaluation, Preclinical, Enzyme Inhibitors chemistry, Enzyme Inhibitors toxicity, Humans, Hydrophobic and Hydrophilic Interactions, Kinetics, Models, Chemical, Organophosphorus Compounds chemistry, Organophosphorus Compounds toxicity, Quantitative Structure-Activity Relationship, Enzyme Inhibitors pharmacology, Esterases antagonists & inhibitors, Organophosphorus Compounds pharmacology
- Abstract
Certain organophosphorus compounds (OPCs) inhibit various serine esterases (EOHs) via phosphorylation of their active site serines. We focused on 4 EOHs of particular toxicological interest: acetylcholinesterase (AChE: acute neurotoxicity; cognition enhancement), butyrylcholinesterase (BChE: inhibition of drug metabolism and/or stoichiometric scavenging of EOH inhibitors; cognition enhancement), carboxylesterase (CaE: inhibition of drug metabolism and/or stoichiometric scavenging of EOH inhibitors), and neuropathy target esterase (NTE: delayed neurotoxicity, OPIDN). The relative degree of inhibition of these EOHs constitutes the "esterase profile" of an OPC and serves as a major determinant of its net physiological effects. Thus, understanding and controlling the esterase profile of OPC activity and selectivity toward these 4 target enzymes is a significant undertaking. In the present study, we analyzed the inhibitor properties of 52 OPCs against the 4 EOHs, along with pairwise and multitarget selectivities between them, using 2 QSAR approaches: Hansch modeling and Molecular Field Topology Analysis (MFTA). The general formula of the OPCs was (RO)(2)P(O)X, where R = alkyl, X = - SCH(Hal)COOEt (Hal = Cl, Br), -SCHCl(2), -SCH(2)Br, -OCH(CF(3))R(1) (R(1) = C(6)H(5), CF(3), COOEt, COOMe). The Hansch model showed that increasing neuropathic potential correlated with rising R hydrophobicity; moreover, OPC binding to scavenger EOHs (BChE and CaE) had different effects on potential acute and delayed neurotoxicity. Predicted protective roles of BChE and CaE against acute toxicity were enhanced with increasing hydrophobicity, but projected protection against OPIDN was decreased. Next, Molecular Field Topology Analysis (MFTA) models were built, considering atomic descriptors, e.g., effective charge, van der Waals radius of environment, and group lipophilicity. Activity/selectivity maps confirmed predictions from Hansch models and revealed other structural factors affecting activity and selectivity. Virtual screening based on multitarget selectivity MFTA models was used to design libraries of OPCs with favorable esterase profiles for potential application as selective inhibitors of CaE without untoward side effects., (Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
50. Computer-aided design of negative allosteric modulators of NMDA receptor.
- Author
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Radchenko EV, Karlov DS, Zefirov AN, Palyulin VA, Zefirov NS, and Pentkovski VM
- Subjects
- Allosteric Regulation, Animals, Humans, Receptors, N-Methyl-D-Aspartate genetics, Receptors, N-Methyl-D-Aspartate metabolism, Molecular Dynamics Simulation, Receptors, N-Methyl-D-Aspartate chemistry
- Published
- 2013
- Full Text
- View/download PDF
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