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Weakly-supervised diffusion models (DMs) in anomaly segmentation, leveraging image-level labels, have attracted significant attention for their superior performance compared to unsupervised methods. It eliminates the need for pixel-level labels in training, offering a more cost-effective alternative to supervised methods. However, existing methods are not fully weakly-supervised because they heavily rely on costly pixel-level labels for hyperparameter tuning in inference. To tackle this challenge, we introduce Anomaly Segmentation with Forward Process of Diffusion Models (AnoFPDM), a fully weakly-supervised framework that operates without the need of pixel-level labels. Leveraging the unguided forward process as a reference for the guided forward process, we select hyperparameters such as the noise scale, the threshold for segmentation and the guidance strength. We aggregate anomaly maps from guided forward process, enhancing the signal strength of anomalous regions. Remarkably, our proposed method outperforms recent state-of-the-art weakly-supervised approaches, even without utilizing pixel-level labels., Comment: v4: added appendices and fixed some typos

Deep neural networks, including Convolutional Neural Networks (CNNs) and Visual Transformers (ViT), have achieved stunning success in medical image domain. We study thorax disease classification in this paper. Effective extraction of features for the disease areas is crucial for disease classification on radiographic images. While various neural architectures and training techniques, such as self-supervised learning with contrastive/restorative learning, have been employed for disease classification on radiographic images, there are no principled methods which can effectively reduce the adverse effect of noise and background, or non-disease areas, on the radiographic images for disease classification. To address this challenge, we propose a novel Low-Rank Feature Learning (LRFL) method in this paper, which is universally applicable to the training of all neural networks. The LRFL method is both empirically motivated by the low frequency property observed on all the medical datasets in this paper, and theoretically motivated by our sharp generalization bound for neural networks with low-rank features. In the empirical study, using a neural network such as a ViT or a CNN pre-trained on unlabeled chest X-rays by Masked Autoencoders (MAE), our novel LRFL method is applied on the pre-trained neural network and demonstrate better classification results in terms of both multiclass area under the receiver operating curve (mAUC) and classification accuracy.

Age is one of the major known risk factors for Alzheimer's Disease (AD). Detecting AD early is crucial for effective treatment and preventing irreversible brain damage. Brain age, a measure derived from brain imaging reflecting structural changes due to aging, may have the potential to identify AD onset, assess disease risk, and plan targeted interventions. Deep learning-based regression techniques to predict brain age from magnetic resonance imaging (MRI) scans have shown great accuracy recently. However, these methods are subject to an inherent regression to the mean effect, which causes a systematic bias resulting in an overestimation of brain age in young subjects and underestimation in old subjects. This weakens the reliability of predicted brain age as a valid biomarker for downstream clinical applications. Here, we reformulate the brain age prediction task from regression to classification to address the issue of systematic bias. Recognizing the importance of preserving ordinal information from ages to understand aging trajectory and monitor aging longitudinally, we propose a novel ORdinal Distance Encoded Regularization (ORDER) loss that incorporates the order of age labels, enhancing the model's ability to capture age-related patterns. Extensive experiments and ablation studies demonstrate that this framework reduces systematic bias, outperforms state-of-art methods by statistically significant margins, and can better capture subtle differences between clinical groups in an independent AD dataset. Our implementation is publicly available at https://github.com/jaygshah/Robust-Brain-Age-Prediction., Comment: Accepted in WACV 2024

Existing approaches to automatic data transformation are insufficient to meet the requirements in many real-world scenarios, such as the building sector. First, there is no convenient interface for domain experts to provide domain knowledge easily. Second, they require significant training data collection overheads. Third, the accuracy suffers from complicated schema changes. To bridge this gap, we present a novel approach that leverages the unique capabilities of large language models (LLMs) in coding, complex reasoning, and zero-shot learning to generate SQL code that transforms the source datasets into the target datasets. We demonstrate the viability of this approach by designing an LLM-based framework, termed SQLMorpher, which comprises a prompt generator that integrates the initial prompt with optional domain knowledge and historical patterns in external databases. It also implements an iterative prompt optimization mechanism that automatically improves the prompt based on flaw detection. The key contributions of this work include (1) pioneering an end-to-end LLM-based solution for data transformation, (2) developing a benchmark dataset of 105 real-world building energy data transformation problems, and (3) conducting an extensive empirical evaluation where our approach achieved 96% accuracy in all 105 problems. SQLMorpher demonstrates the effectiveness of utilizing LLMs in complex, domain-specific challenges, highlighting the potential of their potential to drive sustainable solutions., Comment: 10 pages, 7 figures

The ability to classify images is dependent on having access to large labeled datasets and testing on data from the same domain that the model can train on. Classification becomes more challenging when dealing with new data from a different domain, where gathering and especially labeling a larger image dataset for retraining a classification model requires a labor-intensive human effort. Cross-domain classification frameworks were developed to handle this data domain shift problem by utilizing unsupervised image-to-image translation models to translate an input image from the unlabeled domain to the labeled domain. The problem with these unsupervised models lies in their unsupervised nature. For lack of annotations, it is not possible to use the traditional supervised metrics to evaluate these translation models to pick the best-saved checkpoint model. This paper introduces a new method called Domain-knowledge Inspired Pseudo Supervision (DIPS) which utilizes domain-informed Gaussian Mixture Models to generate pseudo annotations to enable the use of traditional supervised metrics. This method was designed specifically to support cross-domain classification applications contrary to other typically used metrics such as the FID which were designed to evaluate the model in terms of the quality of the generated image from a human-eye perspective. DIPS proves its effectiveness by outperforming various GAN evaluation metrics, including FID, when selecting the optimal saved checkpoint model. It is also evaluated against truly supervised metrics. Furthermore, DIPS showcases its robustness and interpretability by demonstrating a strong correlation with truly supervised metrics, highlighting its superiority over existing state-of-the-art alternatives. The code and data to replicate the results can be found on the official Github repository: https://github.com/Hindawi91/DIPS, Comment: arXiv admin note: text overlap with arXiv:2212.09107

Harnessing the power of deep neural networks in the medical imaging domain is challenging due to the difficulties in acquiring large annotated datasets, especially for rare diseases, which involve high costs, time, and effort for annotation. Unsupervised disease detection methods, such as anomaly detection, can significantly reduce human effort in these scenarios. While anomaly detection typically focuses on learning from images of healthy subjects only, real-world situations often present unannotated datasets with a mixture of healthy and diseased subjects. Recent studies have demonstrated that utilizing such unannotated images can improve unsupervised disease and anomaly detection. However, these methods do not utilize knowledge specific to registered neuroimages, resulting in a subpar performance in neurologic disease detection. To address this limitation, we propose Brainomaly, a GAN-based image-to-image translation method specifically designed for neurologic disease detection. Brainomaly not only offers tailored image-to-image translation suitable for neuroimages but also leverages unannotated mixed images to achieve superior neurologic disease detection. Additionally, we address the issue of model selection for inference without annotated samples by proposing a pseudo-AUC metric, further enhancing Brainomaly's detection performance. Extensive experiments and ablation studies demonstrate that Brainomaly outperforms existing state-of-the-art unsupervised disease and anomaly detection methods by significant margins in Alzheimer's disease detection using a publicly available dataset and headache detection using an institutional dataset. The code is available from https://github.com/mahfuzmohammad/Brainomaly., Comment: Accepted in WACV 2024

The detection of critical heat flux (CHF) is crucial in heat boiling applications as failure to do so can cause rapid temperature ramp leading to device failures. Many machine learning models exist to detect CHF, but their performance reduces significantly when tested on data from different domains. To deal with datasets from new domains a model needs to be trained from scratch. Moreover, the dataset needs to be annotated by a domain expert. To address this issue, we propose a new framework to support the generalizability and adaptability of trained CHF detection models in an unsupervised manner. This approach uses an unsupervised Image-to-Image (UI2I) translation model to transform images in the target dataset to look like they were obtained from the same domain the model previously trained on. Unlike other frameworks dealing with domain shift, our framework does not require retraining or fine-tuning of the trained classification model nor does it require synthesized datasets in the training process of either the classification model or the UI2I model. The framework was tested on three boiling datasets from different domains, and we show that the CHF detection model trained on one dataset was able to generalize to the other two previously unseen datasets with high accuracy. Overall, the framework enables CHF detection models to adapt to data generated from different domains without requiring additional annotation effort or retraining of the model., Comment: This work has been submitted to the Expert Systems With Applications Journal on Sep 25, 2022

Modern Building Automation Systems (BASs), as the brain that enables the smartness of a smart building, often require increased connectivity both among system components as well as with outside entities, such as optimized automation via outsourced cloud analytics and increased building-grid integrations. However, increased connectivity and accessibility come with increased cyber security threats. BASs were historically developed as closed environments with limited cyber-security considerations. As a result, BASs in many buildings are vulnerable to cyber-attacks that may cause adverse consequences, such as occupant discomfort, excessive energy usage, and unexpected equipment downtime. Therefore, there is a strong need to advance the state-of-the-art in cyber-physical security for BASs and provide practical solutions for attack mitigation in buildings. However, an inclusive and systematic review of BAS vulnerabilities, potential cyber-attacks with impact assessment, detection & defense approaches, and cyber-secure resilient control strategies is currently lacking in the literature. This review paper fills the gap by providing a comprehensive up-to-date review of cyber-physical security for BASs at three levels in commercial buildings: management level, automation level, and field level. The general BASs vulnerabilities and protocol-specific vulnerabilities for the four dominant BAS protocols are reviewed, followed by a discussion on four attack targets and seven potential attack scenarios. The impact of cyber-attacks on BASs is summarized as signal corruption, signal delaying, and signal blocking. The typical cyber-attack detection and defense approaches are identified at the three levels. Cyber-secure resilient control strategies for BASs under attack are categorized into passive and active resilient control schemes. Open challenges and future opportunities are finally discussed., Comment: 38 pages, 7 figures, 6 tables, accepted by Annual Reviews in Control

Automated anomaly detection from medical images, such as MRIs and X-rays, can significantly reduce human effort in disease diagnosis. Owing to the complexity of modeling anomalies and the high cost of manual annotation by domain experts (e.g., radiologists), a typical technique in the current medical imaging literature has focused on deriving diagnostic models from healthy subjects only, assuming the model will detect the images from patients as outliers. However, in many real-world scenarios, unannotated datasets with a mix of both healthy and diseased individuals are abundant. Therefore, this paper poses the research question of how to improve unsupervised anomaly detection by utilizing (1) an unannotated set of mixed images, in addition to (2) the set of healthy images as being used in the literature. To answer the question, we propose HealthyGAN, a novel one-directional image-to-image translation method, which learns to translate the images from the mixed dataset to only healthy images. Being one-directional, HealthyGAN relaxes the requirement of cycle consistency of existing unpaired image-to-image translation methods, which is unattainable with mixed unannotated data. Once the translation is learned, we generate a difference map for any given image by subtracting its translated output. Regions of significant responses in the difference map correspond to potential anomalies (if any). Our HealthyGAN outperforms the conventional state-of-the-art methods by significant margins on two publicly available datasets: COVID-19 and NIH ChestX-ray14, and one institutional dataset collected from Mayo Clinic. The implementation is publicly available at https://github.com/mahfuzmohammad/HealthyGAN., Comment: International Workshop on Simulation and Synthesis in Medical Imaging, MICCAI, 2022

The potentials of automotive radar for autonomous driving have not been fully exploited. We present a multi-input multi-output (MIMO) radar transmit and receive signal processing chain, a knowledge-aided approach exploiting the radar domain knowledge and signal structure, to generate high resolution radar range-azimuth spectra for object detection and classification using deep neural networks. To achieve waveform orthogonality among a large number of transmit antennas cascaded by four automotive radar transceivers, we propose a staggered time division multiplexing (TDM) scheme and velocity unfolding algorithm using both Chinese remainder theorem and overlapped array. Field experiments with multi-modal sensors were conducted at The University of Alabama. High resolution radar spectra were obtained and labeled using the camera and LiDAR recordings. Initial experiments show promising performance of object detection using an image-oriented deep neural network with an average precision of 96.1% at an intersection of union (IoU) of typically 0.5 on 2,000 radar frames., Comment: 6 pages, 9 figures

Compressed sensing (CS) has become a popular field in the last two decades to represent and reconstruct a sparse signal with much fewer samples than the signal itself. Although regular images are not sparse on their own, many can be sparsely represented in wavelet transform domain. Therefore, CS has also been widely applied to represent digital images. However, an alternative approach, adaptive sampling such as mesh-based image representation (MbIR), has not attracted as much attention. MbIR works directly on image pixels and represents the image with fewer points using a triangular mesh. In this paper, we perform a preliminary comparison between the CS and a recently developed MbIR method, AMA representation. The results demonstrate that, at the same sample density, AMA representation can provide better reconstruction quality than CS based on the tested algorithms. Further investigation with recent algorithms is needed to perform a thorough comparison., Comment: 9 pages, 4 figures, 2 tables

Object detection, segmentation and classification are three common tasks in medical image analysis. Multi-task deep learning (MTL) tackles these three tasks jointly, which provides several advantages saving computing time and resources and improving robustness against overfitting. However, existing multitask deep models start with each task as an individual task and integrate parallelly conducted tasks at the end of the architecture with one cost function. Such architecture fails to take advantage of the combined power of the features from each individual task at an early stage of the training. In this research, we propose a new architecture, FTMTLNet, an MTL enabled by feature transferring. Traditional transfer learning deals with the same or similar task from different data sources (a.k.a. domain). The underlying assumption is that the knowledge gained from source domains may help the learning task on the target domain. Our proposed FTMTLNet utilizes the different tasks from the same domain. Considering features from the tasks are different views of the domain, the combined feature maps can be well exploited using knowledge from multiple views to enhance the generalizability. To evaluate the validity of the proposed approach, FTMTLNet is compared with models from literature including 8 classification models, 4 detection models and 3 segmentation models using a public full field digital mammogram dataset for breast cancer diagnosis. Experimental results show that the proposed FTMTLNet outperforms the competing models in classification and detection and has comparable results in segmentation.

Breast cancer is the second leading cause of cancer death among women worldwide. Nevertheless, it is also one of the most treatable malignances if detected early. Screening for breast cancer with digital mammography (DM) has been widely used. However it demonstrates limited sensitivity for women with dense breasts. An emerging technology in the field is contrast-enhanced digital mammography (CEDM), which includes a low energy (LE) image similar to DM, and a recombined image leveraging tumor neoangiogenesis similar to breast magnetic resonance imaging (MRI). CEDM has shown better diagnostic accuracy than DM. While promising, CEDM is not yet widely available across medical centers. In this research, we propose a Shallow-Deep Convolutional Neural Network (SD-CNN) where a shallow CNN is developed to derive "virtual" recombined images from LE images, and a deep CNN is employed to extract novel features from LE, recombined or "virtual" recombined images for ensemble models to classify the cases as benign vs. cancer. To evaluate the validity of our approach, we first develop a deep-CNN using 49 CEDM cases collected from Mayo Clinic to prove the contributions from recombined images for improved breast cancer diagnosis (0.86 in accuracy using LE imaging vs. 0.90 in accuracy using both LE and recombined imaging). We then develop a shallow-CNN using the same 49 CEDM cases to learn the nonlinear mapping from LE to recombined images. Next, we use 69 DM cases collected from the hospital located at Zhejiang University, China to generate "virtual" recombined images. Using DM alone provides 0.91 in accuracy, whereas SD-CNN improves the diagnostic accuracy to 0.95.