1,837 results on '"Szubert A"'
Search Results
2. Biomarkers of mortality in adults and adolescents with advanced HIV in sub-Saharan Africa
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Riitho, Victor, Connon, Roisin, Gwela, Agnes, Namusanje, Josephine, Nhema, Ruth, Siika, Abraham, Bwakura-Dangarembizi, Mutsa, Musiime, Victor, Berkley, James A., Szubert, Alex J., Gibb, Diana M., Walker, A. Sarah, Klein, Nigel, and Prendergast, Andrew J.
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- 2024
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3. Dataset of building locations in Poland in the 1970s and 1980s
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Szubert, Piotr, Kaim, Dominik, and Kozak, Jacek
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- 2024
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4. Phylogenetic and molecular characteristics of two Aphanizomenon strains from the Curonian Lagoon, Southeastern Baltic Sea and their biological activities
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Donata Overlingė, Anna Toruńska-Sitarz, Marta Cegłowska, Karolina Szubert, and Hanna Mazur-Marzec
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Medicine ,Science - Abstract
Abstract Polyphasic approach has become a generally accepted method for the classification of cyanobacteria. In this study, we present a detailed characterisation of two strains, KUCC C1 and KUCC C2, isolated from the Curonian Lagoon and classified to the Aphanizomenon genus. Despite phylogenetic similarity, the strains differ with respect to morphology, ultrastructure characteristics, and the metabolite profile. In the KUCC C1 extract, three unknown peptides and eight anabaenopeptins were detected, while KUCC C2 produced one unknown peptide and one aeruginosin. In both strains, a total of eleven pigments were detected. The production of myxoxantophyll, chlorophyll-a, chlorophylide-a, and zeaxanthin was higher in KUCC C2 than in KUCC C1. Extracts from both strains of Aphanizomenon also had different effects in antibacterial, anticancer and enzyme inhibition assays. Comprehensive analyses of Aphanizomenon strains performed in this study showed significant diversity between the isolates from the same bloom sample. These differences should be considered when exploring the ecological significance and biotechnological potential of a given population.
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- 2024
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5. Spring water resources in the Tatra Mountains
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Anna Bojarczuk, Agnieszka Rajwa-Kuligiewicz, Janusz Siwek, Mirosław Żelazny, and Marta Szubert-Pufelska
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crenological index ,karst springs ,polish tatra mountains ,specific runoff ,springs ,River, lake, and water-supply engineering (General) ,TC401-506 ,Irrigation engineering. Reclamation of wasteland. Drainage ,TC801-978 - Abstract
The Tatra Mountains stand out as the wettest and most water-rich region in Poland. Despite this, limited studies addressed this issue, and current knowledge largely relies on data obtained in the mid-20th century, with a substantial lack of current estimates. This study aims to fill this gap by evaluating the contemporary water resources of springs in the Tatra Mountains. The study bases on the most recent hydrological mapping of 1,018 springs. The spring resources were evaluated using parameters such as the number of springs, specific runoff, and crenological index, analysed across different physiographic regions, tectonic units, and altitudinal zones. Our studies showed that the highest number of springs occurs in the Western Tatras (66%) between 1000 and 1400 m a.s.l., especially within the Sub-Tatric unit. Springs with discharges ranging from 0.1–1.0 dm3∙s−1 constitute approximately 70% of all springs but they contribute to only 8.1% of spring water resources. Total spring discharge amounted to 2726 dm3∙s−1 and was higher in the Western Tatras (1982.5 dm3∙s−1 than in the High Tatras (743.5 dm3∙s−1 . The specific runoff amounted to 12.9 dm3∙s−1 m−2 with the highest total runoff at altitudes occupied by the most abundant karst springs (1000–1100 m a.s.l.). The crenological index amounted to 4.8 springs∙km−2 and was higher in the Western Tatras (6.5 springs∙km−2) than in the High Tatras (4.9 springs∙kmup−2) . The analysis revealed that the only five largest karst springs, constituting a mere 0.5% of all springs, account for 65% of spring water resources in the Tatras.
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- 2024
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6. Physics Informed Neural Network Code for 2D Transient Problems (PINN-2DT) Compatible with Google Colab
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Maczuga, Paweł, Sikora, Maciej, Skoczeń, Maciej, Rożnawski, Przemysław, Tłuszcz, Filip, Szubert, Marcin, Łoś, Marcin, Dzwinel, Witold, Pingali, Keshav, and Paszyński, Maciej
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Computer Science - Computational Engineering, Finance, and Science ,Computer Science - Machine Learning ,Computer Science - Mathematical Software ,Mathematics - Numerical Analysis ,G.1.8 ,G.1.10 ,J.2 ,J.3 ,G.4 ,I.6.4 ,I.m - Abstract
We present an open-source Physics Informed Neural Network environment for simulations of transient phenomena on two-dimensional rectangular domains, with the following features: (1) it is compatible with Google Colab which allows automatic execution on cloud environment; (2) it supports two dimensional time-dependent PDEs; (3) it provides simple interface for definition of the residual loss, boundary condition and initial loss, together with their weights; (4) it support Neumann and Dirichlet boundary conditions; (5) it allows for customizing the number of layers and neurons per layer, as well as for arbitrary activation function; (6) the learning rate and number of epochs are available as parameters; (7) it automatically differentiates PINN with respect to spatial and temporal variables; (8) it provides routines for plotting the convergence (with running average), initial conditions learnt, 2D and 3D snapshots from the simulation and movies (9) it includes a library of problems: (a) non-stationary heat transfer; (b) wave equation modeling a tsunami; (c) atmospheric simulations including thermal inversion; (d) tumor growth simulations., Comment: 21 pages, 13 figures
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- 2023
7. Cross-linguistically consistent semantic and syntactic annotation of child-directed speech
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Szubert, Ida, Abend, Omri, Schneider, Nathan, Gibbon, Samuel, Mahon, Louis, Goldwater, Sharon, and Steedman, Mark
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- 2024
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8. Correction: Cross-linguistically consistent semantic and syntactic annotation of child-directed speech
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Szubert, Ida, Abend, Omri, Schneider, Nathan, Gibbon, Samuel, Mahon, Louis, Goldwater, Sharon, and Steedman, Mark
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- 2024
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9. Biomarkers of mortality in adults and adolescents with advanced HIV in sub-Saharan Africa
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Victor Riitho, Roisin Connon, Agnes Gwela, Josephine Namusanje, Ruth Nhema, Abraham Siika, Mutsa Bwakura-Dangarembizi, Victor Musiime, James A. Berkley, Alex J. Szubert, Diana M. Gibb, A. Sarah Walker, Nigel Klein, and Andrew J. Prendergast
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Science - Abstract
Abstract One-third of people with HIV in sub-Saharan Africa start antiretroviral therapy (ART) with advanced disease. We investigated associations between immune biomarkers and mortality in participants with advanced HIV randomised to cotrimoxazole or enhanced antimicrobial prophylaxis in the Reduction of Early Mortality in HIV-Infected Adults and Children Starting Antiretroviral Therapy (REALITY) trial (ISRCTN43622374). Biomarkers were assayed using ELISA and Luminex. Associations between baseline values and all-cause 24-week mortality were analysed using Cox models, and for cause-specific mortality used Fine & Gray models, including prophylaxis randomisation, viral load, CD4, WHO stage, age, BMI, and site as covariates; and weighted according to inverse probability of selection into the substudy. Higher baseline CRP, IFN-γ, IL-6 and IP-10 were associated with higher all-cause mortality; and higher IL-23, IL-2 and RANTES with lower all-cause mortality. Associations varied by cause of death: tuberculosis-associated mortality was most strongly associated with higher CRP and sST2, and cryptococcosis-associated mortality with higher IL-4 and lower IL-8. Changes in I-FABP (p = 0.002), faecal alpha-1 antitrypsin (p = 0.01) and faecal myeloperoxidase (p = 0.005) between baseline and 4 weeks post-ART were greater in those receiving enhanced versus cotrimoxazole prophylaxis. Our findings highlight how the immune milieu shapes outcomes following ART initiation, and how adjunctive antimicrobials can modulate the gut environment in advanced HIV.
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- 2024
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10. Zur Sprache der sogenannten phraseologischen Wortverbindungen in juristischen Texten am Beispiel des Ausdrucks „die juristische Person'
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Rafał Szubert
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feste wortverbindungen der juristischen fachsprache ,fachsprache des rechts ,sprachliche epistemologie ,begriffsgeschichte ,rechtslinguistik ,semantik ,semiotik ,terminologisierung ,Germanic languages. Scandinavian languages ,PD1-7159 ,German literature ,PT1-4897 - Abstract
In dem vorliegenden Beitrag wird der Frage nachgegangen, ob die epistemischen Implikationen der Annahme der Binarität der Rechtswahrnehmung auf die bisherige Auffassung der Beschaffenheit der festen Wortverbindungen in der Fachsprache des Rechts Einfluss haben können. Diese Frage ist insbesondere im Kontext des Merkmals der semantischen Festigkeit derjenigen festen Wortverbindungen relevant, welche Termini sind. Nach der Meinung des Autors können Merkmale der festen Wortverbindungen der juristischen Fachsprache, welche Termini sind, nicht ohne Einbeziehung der Begriffsgeschichte erörtert werden.
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- 2024
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11. Dataset of building locations in Poland in the 1970s and 1980s
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Piotr Szubert, Dominik Kaim, and Jacek Kozak
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Science - Abstract
Abstract The aim of this study was to create a dataset of building locations in Poland from the 1970s–1980s. The source information was the historical 1:10 000 Polish topographic map. Building footprints were detected and extracted from approximately 8,500 scanned map sheets using the Mask R-CNN model implemented in Esri ArcGIS Pro software, and converted to point building locations. The dataset of building locations covers the entire country and contains approximately 11 million points representing buildings. The accuracy of the dataset was assessed manually on randomly selected map sheets. The overall accuracy is 95% (F1 = 0.98). The dataset may be used in conjunction with various contemporary land use, land cover and cadastral datasets in a broad range of applications related to long-term changes in rural and urban areas, including urban sprawl and its environmental and social consequences. It can also serve as a highly reliable reference dataset for regional or global settlement products derived, e.g., from early Landsat data.
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- 2024
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12. An update on possibilities of metals recovery from Polish copper ores by biotechnology. Project Ecometals
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Szubert Agnieszka, Guezennec Anne-Gwénaëlle, Bodénan Françoise, Dirlich Stefan, Pawłowska Agnieszka, Grotowski Andrzej, Sadowski Zygmunt, and Witecki Kajetan
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Environmental sciences ,GE1-350 - Abstract
The possibilities of metals recovery from copper ores with the biotechnological methods are widely known. The methods consist in bioleaching of copper ores, copper concentrates and byproducts of their production, as well as metals recovery from leaching solutions. Biohydrometallurgical methods were tested for years to be applied at KGHM Polska Miedź S.A., in order to improve efficiency of copper production. Several different research units worked on the topic, and the most significant and wide range initiatives in this area are mentioned in this article. One of the initiatives is an ongoing German and French Ecometals project. KGHM Polska Miedź S.A. and KGHM Cuprum Ltd. Research and Development Centre are this project Partners. In the frame of the project different metals bearing materials (ores, concentrates and tailings) are tested. Among them three lithological types of the copper ore from Rudna mine and the copper concentrate from Lubin concentrator are used for studies. The article gives a general overview of these activities, with the main focus on results of bioleaching studies of selected materials, conducted by KGHM Cuprum. In these studies sandstone and shale, as well as so called “shale concentrate” (containing 39% of the shale) were used for experiments, and possibilities of their bioleaching were evaluated.
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- 2017
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13. Historical maps improve the identification of forests with potentially high conservation value
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Ewa Grabska‐Szwagrzyk, Michał Jakiel, William Keeton, Jacek Kozak, Tobias Kuemmerle, Kamil Onoszko, Krzysztof Ostafin, Mahsa Shahbandeh, Piotr Szubert, Anna Szwagierczak, Jerzy Szwagrzyk, Elżbieta Ziółkowska, and Dominik Kaim
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Carpathian Mountains ,forest continuity ,Green Deal ,historical maps ,persistent forests ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Abstract The EU Biodiversity Strategy 2030 aims to better protect natural ecosystems with high biodiversity and climate change mitigation potential. To achieve this goal, it is crucial to identify forests worth protecting, such as those characterized by long continuity and old age. Here, we propose a robust approach that combines historical maps from the mid‐19th century with remote sensing data to identify areas that have been forested for over 150 years, aiming to reduce the need for detailed and time‐consuming field investigations in potential conservation areas. We tested this approach in a 20,000 km2 region in the Polish Carpathians, an area likely containing many unprotected forests of high conservation value, where historical maps from the mid‐19th century are representative of much of Central Europe. Our results showed that an area of approximately 4200 km2 has been continuously forested since at least the mid‐19th century. Currently, 50% of these forests are outside protected areas, representing an important conservation opportunity. More generally, our approach can support the identification of valuable forests worth protecting before they are lost and provide useful insights for policymakers and stakeholders in the ongoing debate on the challenges of improving forest conservation in the Carpathians, and Europe more widely.
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- 2024
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14. Accurate prediction of all-cause mortality in patients with metabolic dysfunction-associated steatotic liver disease using electronic health records
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Ignat Drozdov, Benjamin Szubert, Ian A. Rowe, Timothy J. Kendall, and Jonathan A. Fallowfield
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Metabolic dysfunction-associated steatotic liver disease ,Electronic health records ,Artificial intelligence ,Deep Learning ,Prognostic model ,Specialties of internal medicine ,RC581-951 - Abstract
Introduction and Objectives: Despite the huge clinical burden of MASLD, validated tools for early risk stratification are lacking, and heterogeneous disease expression and a highly variable rate of progression to clinical outcomes result in prognostic uncertainty. We aimed to investigate longitudinal electronic health record-based outcome prediction in MASLD using a state-of-the-art machine learning model. Patients and Methods: n = 940 patients with histologically-defined MASLD were used to develop a deep-learning model for all-cause mortality prediction. Patient timelines, spanning 12 years, were fully-annotated with demographic/clinical characteristics, ICD-9 and -10 codes, blood test results, prescribing data, and secondary care activity. A Transformer neural network (TNN) was trained to output concomitant probabilities of 12-, 24-, and 36-month all-cause mortality. In-sample performance was assessed using 5-fold cross-validation. Out-of-sample performance was assessed in an independent set of n = 528 MASLD patients. Results: In-sample model performance achieved AUROC curve 0.74–0.90 (95 % CI: 0.72–0.94), sensitivity 64 %-82 %, specificity 75 %–92 % and Positive Predictive Value (PPV) 94 %-98 %. Out-of-sample model validation had AUROC 0.70–0.86 (95 % CI: 0.67–0.90), sensitivity 69 %–70 %, specificity 96 %–97 % and PPV 75 %–77 %. Key predictive factors, identified using coefficients of determination, were age, presence of type 2 diabetes, and history of hospital admissions with length of stay >14 days. Conclusions: A TNN, applied to routinely-collected longitudinal electronic health records, achieved good performance in prediction of 12-, 24-, and 36-month all-cause mortality in patients with MASLD. Extrapolation of our technique to population-level data will enable scalable and accurate risk stratification to identify people most likely to benefit from anticipatory health care and personalized interventions.
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- 2024
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15. The SPRi determination of cathepsin L and S in plasma and peritoneal fluid of women with endometriosis
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Załęcka, Julia, Zielińska, Zuzanna, Ołdak, Łukasz, Sakowicz, Agata, Mańka, Grzegorz, Kiecka, Mariusz, Spaczyński, Robert, Piekarski, Piotr, Banaszewska, Beata, Jakimiuk, Artur, Issat, Tadeusz, Młodawski, Jakub, Szubert, Maria, Sieroszewski, Piotr, Raba, Grzegorz, Szczupak, Kamil, Kluz, Tomasz, Kluza, Marek, Pierzyński, Piotr, Ciebiera, Michał, Wojtyła, Cezary, Lipa, Michał, Warzecha, Damian, Wielgoś, Mirosław, Cendrowski, Krzysztof, Gorodkiewicz, Ewa, and Laudański, Piotr
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- 2024
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16. Accurate prediction of all-cause mortality in patients with metabolic dysfunction-associated steatotic liver disease using electronic health records
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Drozdov, Ignat, Szubert, Benjamin, Rowe, Ian A., Kendall, Timothy J., and Fallowfield, Jonathan A.
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- 2024
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17. Central pain processing in women with chronic pelvic pain syndrome
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Szubert, Wojciech, Horne, Andrew, Whalley, Heather, and Vincent, Katy
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Central pain processing ,Chronic pelvic pain syndrome ,Chronic pelvic pain ,Functional brain imaging ,FMRI - Abstract
Chronic pelvic pain (CPP) is chronic or persistent pain perceived in structures related to the pelvis of either men or women. It is often associated with negative cognitive, behavioural, sexual, and emotional consequences as well as with symptoms suggestive of lower urinary tract, sexual, bowel, pelvic floor or gynaecological dysfunction. The UK annual prevalence of CPP is estimated at 3.8% and it is thought there are approximately one million women with CPP living in the UK.CPP is the most common cause for gynaecology referral accounting for 20% of all gynaecology consultations and 40% of diagnostic laparoscopies. In approximately 35% of cases there is no obvious pelvic pathology, leading to the diagnosis of Chronic Pelvic Pain Syndrome (CPPS). Despite CPP being associated with significant socio-economic cost, it still remains poorly understood, making clinical management challenging. The overarching objective of my MD thesis was to understand how CPPS is clinically managed in the UK, understand the mechanisms underpinning central pain processing and how this knowledge can influence future clinical practice. Specifically, I had the following aims: 1) Investigate the current clinical management trends for women with CPPS in the UK. 2) Determine if there are differences in central pain processing between women with CPPS and healthy female volunteers with no pelvic pain. 3) Investigate if existing clinical questionnaires can stratify women with CPPS into clinically meaningful groups. To achieve the first aim, I designed and distributed an online survey to UK clinicians managing chronic pelvic pain. A descriptive statistical analysis of the responses was carried out using an online survey tool. My online survey generated 148 responses. 45% of survey respondents indicated that they felt the management of women with CPP in the UK is 'poor' or 'very poor'. 51% of clinicians prioritised 'pain management' above other aspects of care. Pelvic ultrasound and diagnostic laparoscopy were the most frequently performed investigations (97% and 78% respectively). The majority of clinicians (66%) discharged patients back to primary care without any further management plan or follow-up after negative findings at diagnostic laparoscopy. Of those clinicians who instigate post-operative treatment, hormonal therapies were the most commonly used (combined oral contraceptive pill - 84%, GnRH analogues - 69%, progestogens - 52%). The survey results indicate that CPP is managed predominantly by obstetricians and gynaecologists with relatively low case load, suggesting that majority are not 'specialists' in the field. There is surprisingly high level of dissatisfaction amongst the clinicians about the care they provide. The majority of women are referred back to community care following 'negative' finding at diagnostic laparoscopy, often without treatment or follow-up plans. Survey participants reported lack of seamless referral pathways and lack of multi-disciplinary approach as main barriers in delivering quality care to women with pelvic pain. This highlights an urgent need for research, education and improved clinical guidance to advance the management of this common but challenging gynaecological problem. To address the second aim, I performed a case-controlled study comprising two groups of participants, women with CPPS and healthy female volunteers with no pelvic pain. Women with CPPS and healthy volunteers meeting the inclusion criteria completed validated measures of pain and psychological state, and provided a blood sample for serum estrogen and progesterone levels. Subsequently, all participants underwent a functional MRI (fMRI) scan of their brain. The scan session included an acquisition of structural images and event-related task fMRI with variable interval design, during which participants received punctate stimuli over the suprapubic area of the abdomen using 300-gramm Von Frey filament. The MRI data were analysed using FMRIB's Software Library (FSL). Standard data pre-processing (brain extraction, registration, B0 field unwarping and motion correction) was carried out. FSL FEAT was used for the first and higher-level analyses using mixed effects methods (Z score threshold = 3.1, cluster corrected regions considered to be significant at P<0.05). A sub-group of healthy volunteers (n=13) was matched with women with CPPS (n=13) for their age (+/- 5 years) and hormonal status (method of contraception or the stage of menstrual cycle). This approach allowed further analyses controlling for hormonal state, a well-known factor influencing pain modulation. I investigated the hypothesised differences in central pain processing between women with CPPS and healthy female volunteers in two ways: 1) Base analysis: 42 women with CPPS compared with 15 healthy volunteers. This approach maximised sample size and statistical power but did not control for hormonal state differences between the groups. 2) Matched analysis: 13 'hormonally matched' women with CPPS compared with 13 healthy volunteers. This approach controlled for the hormonal state, but smaller cohort had reduced power to detect fMRI differences in brain activity between the analysed groups. In the 'base analysis', there was no difference (P=0.46) in the age between healthy volunteers (median=27, range: 23-35) and women with CPPS (median=26, range: 19-50). As predicted, women with CPPS experienced significantly higher (P<0.0001) level of experimental pain (mean=4, range: 0-9 out of 10) than healthy volunteers (mean=1, range: 0-2 out of 10). All other measures of pain (background pain, current pain, Brief Pain Inventory score and PainDETECT neuropathic pain questionnaire) and psychological distress measures (General Health Questionnaire, Pain Catastrophising Questionnaire) were also significantly higher in women with CPPS. Likewise, in the 'matched analysis', there was no statistically significant difference (P=0.69) in the age between healthy volunteers (mean=28, range: 23-35) and matched women with CPPS (mean=27, range: 21-35). There was also no difference in hormonal usage between both groups (15% - COCP, 16% POP, 15% - Nexplanon, 31% - Mirena IUS, 16.7% - follicular phase of unsuppressed menstrual cycle). Similarly, as in the 'base analysis', women with CPPS experienced significantly higher (P=0.002) level of experimental pain (mean=4, range: 1-8 out of 10) than healthy volunteers (mean=1, range: 0-2 out of 10) as well as all other measures of pain and psychological distress. Examination of the fMRI data in 'base' and 'matched analyses' did not identify any significant differences in stimulus-related neuronal activity between the groups using whole-brain and restricted (regions known to be altered in other chronic pain conditions) approach. My study investigating the differences in central pain processing between women with CPPS and healthy volunteers confirms significantly higher level of background and experimental pain, higher levels of mental health distress, catastrophic thinking, and higher likelihood of neuropathic pain amongst women suffering from CPPS. This, however, does not translate to altered brain activity in response to painful stimuli as it is documented in other chronic pain conditions. A likely explanation is the heterogeneity of CPPS phenotypes and dynamic central nervous system 'pain matrix' consisting of various brain regions involved in pain amplification. Indeed, the current literature provides inconsistent results in relation to central pain processing. To address the third aim, I identified three key factors known to be associated with pain modulatory mechanisms: type of pain (nociceptive/neuropathic), level of psychological distress and presence of catastrophic thinking. These factors were measured using established clinical questionnaires: PainDETECT, General Health Questionnaire (GHQ-12) and Pain Catastrophising Questionnaire (PCQ), respectively. Women with CPPS were stratified into high and low scoring sub-groups in each of the questionnaires. Pain and psychological measures were analysed defining clinically relevant pain/psychological phenotypes. Analyses of the fMRI data from the previous experiment were carried out to determine if there are differences in central pain processing between high and low scoring participant phenotypes. Stratification of women with CPPS using questionnaires was able to identify participants with significantly higher level of pain severity and pain interference but none of them was able to identify difference in response to the experimental painful stimuli or relief from analgesics. GHQ-12 and PCQ questionnaires stratified women with CPPS in all three key factors known to be associated with pain modulatory mechanisms. In summary, the results presented in my thesis considerably add to the existing data on our understanding and management of women reporting CPP. My survey highlights the need for urgent work to improve understanding of the problem and improvements in clinical care in UK. Behavioural and fMRI data presented here explored the complexity of central pain processing in CPPS and its uniqueness from other chronic pain conditions. Lastly, exploration of the potential for the use of questionnaires in daily clinical practice could streamline and improve the management pathways for women with CPPS.
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- 2022
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18. Cross-linguistically Consistent Semantic and Syntactic Annotation of Child-directed Speech
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Szubert, Ida, Abend, Omri, Schneider, Nathan, Gibbon, Samuel, Mahon, Louis, Goldwater, Sharon, and Steedman, Mark
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Computer Science - Computation and Language - Abstract
This paper proposes a methodology for constructing such corpora of child directed speech (CDS) paired with sentential logical forms, and uses this method to create two such corpora, in English and Hebrew. The approach enforces a cross-linguistically consistent representation, building on recent advances in dependency representation and semantic parsing. Specifically, the approach involves two steps. First, we annotate the corpora using the Universal Dependencies (UD) scheme for syntactic annotation, which has been developed to apply consistently to a wide variety of domains and typologically diverse languages. Next, we further annotate these data by applying an automatic method for transducing sentential logical forms (LFs) from UD structures. The UD and LF representations have complementary strengths: UD structures are language-neutral and support consistent and reliable annotation by multiple annotators, whereas LFs are neutral as to their syntactic derivation and transparently encode semantic relations. Using this approach, we provide syntactic and semantic annotation for two corpora from CHILDES: Brown's Adam corpus (English; we annotate ~80% of its child-directed utterances), all child-directed utterances from Berman's Hagar corpus (Hebrew). We verify the quality of the UD annotation using an inter-annotator agreement study, and manually evaluate the transduced meaning representations. We then demonstrate the utility of the compiled corpora through (1) a longitudinal corpus study of the prevalence of different syntactic and semantic phenomena in the CDS, and (2) applying an existing computational model of language acquisition to the two corpora and briefly comparing the results across languages.
- Published
- 2021
19. Vragen rondom de taal
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Agata Kowalska-Szubert and Zuzanna Czerwonka-Wajda
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Germanic languages. Scandinavian languages ,PD1-7159 - Published
- 2023
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20. Plasma and Peritoneal Fluid Annexin A2 Levels in Patients with Endometriosis
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Zygarowicz M, Kacperczyk-Bartnik J, Sierdzinski J, Wojtyla C, Pierzynski P, Manka G, Kiecka M, Spaczynski RZ, Piekarski P, Banaszewska B, Jakimiuk A, Issat T, Rokita W, Mlodawski J, Szubert M, Sieroszewski P, Raba G, Szczupak K, Kluz T, Kluza M, Lipa M, Warzecha D, Wielgos M, Koc-Zorawska E, Zorawski M, and Laudanski P
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annexin a2 ,endometriosis ,infertility ,Pathology ,RB1-214 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Michal Zygarowicz,1,* Joanna Kacperczyk-Bartnik,2,3,* Janusz Sierdzinski,4 Cezary Wojtyla,5,6 Piotr Pierzynski,5,6 Grzegorz Manka,7 Mariusz Kiecka,7 Robert Z Spaczynski,8 Piotr Piekarski,9 Beata Banaszewska,10 Artur Jakimiuk,11,12 Tadeusz Issat,13 Wojciech Rokita14,15 ,† Jakub Mlodawski,14,15 Maria Szubert,3,16,17 Piotr Sieroszewski,16,18 Grzegorz Raba,19,20 Kamil Szczupak,19,20 Tomasz Kluz,21 Marek Kluza,21 Michal Lipa,3,22 Damian Warzecha,5,22 Miroslaw Wielgos,23,24 Ewa Koc-Zorawska,25,26 Marcin Zorawski,26,27 Piotr Laudanski5,6,28 1Students’ Scientific Group Affiliated to the Department of Obstetrics, Gynecology and Gynecological Oncology, Medical University of Warsaw, Warsaw, Poland; 2II Department of Obstetrics and Gynaecology, Medical University of Warsaw, Warsaw, Poland; 3Club 35. Polish Society of Gynecologists and Obstetricians, Wrocław, Poland; 4Department of Medical Informatics and Telemedicine, Medical University of Warsaw, Warsaw, Poland; 5OVIklinika Infertility Center, Warsaw, Poland; 6Women’s Health Research Institute, Calisia University, Kalisz, Poland; 7Angelius Provita Hospital, Katowice, Poland; 8Center for Gynecology, Obstetrics and Infertility Treatment Pastelova, Poznan, Poland; 9Division of Infertility and Reproductive Endocrinology, Department of Gynecology, Obstetrics and Gynecological Oncology, Poznan University of Medical Sciences, Poznan, Poland; 10Chair and Department of Laboratory Diagnostics, Poznan University of Medical Sciences, Poznan, Poland; 11Department of Obstetrics and Gynecology, Central Clinical Hospital of the Ministry of Interior, Warsaw, Poland; 12Center of Reproductive Health, Institute of Mother and Child in Warsaw, Warsaw, Poland; 13Department of Obstetrics and Gynecology, Institute of Mother and Child in Warsaw, Warsaw, Poland; 14Collegium Medicum Jan Kochanowski University in Kielce, Kielce, Poland; 15Clinic of Obstetrics and Gynecology, Provincial Combined Hospital in Kielce, Kielce, Poland; 16Department of Gynecology and Obstetrics Medical University of Lodz, Lodz, Poland; 17Department of Surgical Gynecology and Oncology, Medical University of Lodz, Lodz, Poland; 18Department of Fetal Medicine and Gynecology, Medical University of Lodz, Lodz, Poland; 19Clinic of Obstetrics and Gynecology, Provincial Hospital, Przemysl, Poland; 20Department of Obstetrics and Gynecology, University of Rzeszow, Rzeszow, Poland; 21Department of Gynecology, Gynecology Oncology and Obstetrics, Institute of Medical Sciences, Medical College of Rzeszow University, Rzeszow, Poland; 22Department of Obstetrics and Gynaecology, Warsaw Southern Hospital, Warsaw, Poland; 23Premium Medical, Warsaw, Poland; 24Faculty of Medicine, Lazarski University, Warsaw, Poland; 25II Department of Nephrology, Hypertension and Internal Medicine with Dialysis Unit, Medical University of Bialystok, Bialystok, Poland; 26The Academy of Applied Medical and Social Sciences, Elbląg, Poland; 27Department of Cardiology, Lipidology and Internal Medicine with Cardiac Intensive Care Unit, Medical University of Bialystok, Bialystok, Poland; 28Department of Obstetrics, Gynecology and Gynecological Oncology, Medical University of Warsaw, Warsaw, Poland*These authors contributed equally to this work†Professor Wojciech Rokita passed away on March 18, 2020Correspondence: Piotr Laudanski, Department of Obstetrics, Gynecology and Gynecological Oncology, Medical University of Warsaw, Kondratowicza Street 8, Warsaw, 03-242, Poland, Tel +48 22 326 53 80, Email piotr.laudanski@wum.edu.plIntroduction: Endometriosis is an inflammatory-related reproductive age disease characterized by the presence of endometrial cells outside the uterine cavity. Current laboratory practice does not provide specific markers for detecting and assessing the advancement of endometriosis in either plasma or peritoneal fluid. The severity of disease is assessed in stages from I to IV based on the results of laparoscopic inspection. The protein annexin A2 (ANXA2) has been reported to be associated with inflammatory processes.Aim of the Study: The study aimed to investigate and compare ANXA2 protein concentration using the ELISA method in plasma and peritoneal fluid in a group of women with endometriosis compared to controls.Materials and Methods: Biological material was collected during a multicenter, cross-sectional study, which was conducted at eight departments during elective laparoscopy from 53 women with and 40 women without endometriosis. Patients were divided by endometriosis stage and infertility status, and then compared with subgroups. Analysis included the Chi-square test for categorical variables, Mann–Whitney U-test and two-sided Wilcoxon rank-sum test for continuous variables.Results: Women with endometriosis had significantly elevated plasma ANXA2 levels compared to women without endometriosis (mean concentrations 28.69 vs 19.61 ng/L, p=0.01). Differences in peritoneal fluid ANXA2 levels were statistically insignificant (mean concentrations of 23.7 vs 22.97 ng/L, p=0.06). Plasma concentrations in patients with stage III and IV endometriosis were significantly higher compared to controls (mean concentrations of 24.19 vs 19.71 ng/L, p=0.03). No such differences were observed in plasma when comparing stages I–II vs III–IV, and stages I–II vs controls (mean concentrations of 33.82 vs 24.19 ng/L, p=0.72 and 33.82 vs 19.71 ng/L, p=0.12, respectively). Comparison of samples from patients with or without infertility, primary or secondary infertility, endometriosis with or without infertility, and non-endometriosis with or without infertility showed no significant differences in the plasma nor in the peritoneal fluid concentrations.Conclusion: ANXA2 is possibly involved in the pathogenesis of endometriosis, especially in advanced stages. Due to the limited group of tested samples, further studies are needed to confirm its role.Keywords: annexin A2, endometriosis, infertility
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- 2023
21. A new methodology using borehole data to measure angular distances between geological interfaces
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Michalak, Michał P., Marzec, Paweł, Turoboś, Filip, Leonowicz, Paulina, Teper, Lesław, Gładki, Paweł, Pyrcz, Michael J., and Szubert, Mariusz
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- 2023
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22. Hydrophobic Cellulose-Based Sorbents for Oil/Water Separation
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Karolina Tomkowiak, Bartłomiej Mazela, Zuzanna Szubert, and Waldemar Perdoch
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cellulose-based absorbents ,hydrophobization ,silanization ,oil-water separation ,biodegradable materials ,environmental sustainability ,Organic chemistry ,QD241-441 - Abstract
The need for sustainable, biodegradable materials to address environmental challenges, such as oil-water separation, is growing. Cellulose-based absorbents offer an eco-friendly alternative to synthetic materials. However, their hydrophobicity must be enhanced for efficient application. In this study, cellulose-based sorbents derived from Kraft and half-bleached chemo-thermomechanical pulp (BCTMP) were hydrophobized using silanization and alkyl ketene dimer (AKD) techniques. Hydrophobic properties were successfully imparted using methyltrimethoxysilane (MTMOS), n-octyltriethoxysilane (NTES), and N-(2-Aminoethyl)-3-aminopropyltrimethoxysilane (AATMS), with water contact angles ranging from 120° to 140°. The water sorption capacity was significantly reduced to below 1 g/g, whereas the oil sorption capacity remained high (19–28 g/g). The most substantial reduction in water vapor absorption (3–6%) was observed for the MTMOS- and AATMS-silanized samples. These results demonstrate the potential of hydrophobized cellulose-based sorbents as sustainable alternatives for oil-water separation, contributing to environmentally friendly water treatment solutions.
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- 2024
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23. Growth of the wildland-urban interface and its spatial determinants in the Polish Carpathians
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Kaim, Dominik, Szubert, Piotr, Shahbandeh, Mahsa, Kozak, Jacek, Ostafin, Krzysztof, and Radeloff, Volker C.
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- 2024
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24. Eine Grenzgängerin auf einer Spritztour
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Rafał Szubert
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antiessentialism ,aristotle ,meaning ,definig ,linguistic sign ,karl popper ,Philology. Linguistics ,P1-1091 ,German literature ,PT1-4897 - Abstract
The subject of this review article is the Festschrift „Grenzgänge: Eine Spritztour durch Text-, Stil- und Zeichengefilde“ (Border Crossings: A Journey through Textual, Stylistic and Significant Fields), edited by Bettina M. Bock, Steffen Pappert and Tanja Škerlavaj, published by Frank & Timme, Berlin, on the occasion of Ulla Fix‘s eightieth birthday. Based on the thesis formulated in the title of the Festschrift, the essence of the philological-scientific contribution of the jubilarian is reflected upon against the background of the model of the linguistic sign and the terminological considerations. The short contributions collected in the Festschrift present fields of research by Ulla Fix. These fields of research are thematised, reflected upon and thought about further. They are not rambling analyses, but succinct, apt brushstrokes to the research questions Ulla Fix opened up and worked on. The construction of the Festschrift and the contributions presented in it can be read as a model representation of the linguistic sign. The contributions provide the semantic equipment for what the naming signalled in the title contains. They are the imagined, thematised, reflected content, concept of what the name Grenzgängerin essentially means. This method of reading the contributions corresponds epistemologically with the anti-essentialist approach to meaning-making opened up by Karl Popper in opposition to Aristotle‘s naïve method and intuitive conception of knowledge. Thus, the jubilarian‘s border crossings become synonymous with the epistemological search for truth in the sense of classical, traditionally grounded and forward-looking philological research. The contributions are also forward-looking in their message - communicative, but above all stimulating and inspiring for every lover of language - for experienced scholars and for those who want to become one.
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- 2023
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25. Is the leptin/BMI ratio a reliable biomarker for endometriosis?
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Aleksandra Zyguła, Anna Sankiewicz, Agata Sakowicz, Ewa Dobrzyńska, Agnieszka Dakowicz, Grzegorz Mańka, Mariusz Kiecka, Robert Spaczynski, Piotr Piekarski, Beata Banaszewska, Artur Jakimiuk, Tadeusz Issat, Wojciech Rokita, Jakub Młodawski, Maria Szubert, Piotr Sieroszewski, Grzegorz Raba, Kamil Szczupak, Tomasz Kluza, Marek Kluza, Piotr Pierzyński, Cezary Wojtyla, Michal Lipa, Damian Warzecha, Miroslaw Wielgos, Krzysztof Cendrowski, Ewa Gorodkiewicz, and Piotr Laudanski
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endometriosis ,leptin ,plasma ,peritoneal fluid ,infertility ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundThe aim of this study was to analyze the concentration of leptin in peritoneal fluid and plasma and to assess their role as potential biomarkers in the diagnosis of endometriosis.Materials & methodsLeptin adjusted for BMI (leptin/BMI ratio) was measured using surface plasmon resonance imaging (SPRI) biosensors. Patients with suspected endometriosis were included in the study. Plasma was collected from 70 cases, and peritoneal fluid from 67 cases. Based on the presence of endometriosis lesions detected during laparoscopy, patients were divided into a study group and a control group (patients without endometriosis).ResultsLeptin/BMI ratio in plasma did not differ between women with endometriosis and the control group (0.7159 ± 0.259 vs 0.6992 ± 0.273, p= 0,7988). No significant differences were observed in peritoneal leptin/BMI ratio levels in patients with and without endometriosis (0.6206 ± 0.258 vs 0.6215 ± 0.264, p= 0,9896). Plasma and peritoneal leptin/BMI ratios were significantly lower in women with endometriosis - related primary infertility compared to women with endometriosis without primary infertility (0.640 ± 0.502 vs 0.878 ± 0.623, p < 0.05). The difference was observed in case of primary infertility, but not in terms of the secondary one. No significant differences were noted between leptin/BMI ratio in the proliferative phase and the secretory phase (0.716 ± 0.252 vs 0.697 ± 0.288, p= 0,7785).ConclusionThe results of present study do not support the relevance of leptin concentration determination as a biomarker of the endometriosis. Due to the limited number of samples in the tested group, further studies are needed to confirm its role.
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- 2024
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26. A new methodology using borehole data to measure angular distances between geological interfaces.
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Michal P. Michalak, Pawel Marzec, Filip Turobos, Paulina Leonowicz, Leslaw Teper, Pawel Gladki, Michael J. Pyrcz, and Mariusz Szubert
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- 2023
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27. Breast mass segmentation in ultrasound with selective kernel U-Net convolutional neural network
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Byra, Michal, Jarosik, Piotr, Szubert, Aleksandra, Galperin, Michael, Ojeda-Fournier, Haydee, Olson, Linda, O’Boyle, Mary, Comstock, Christopher, and Andre, Michael
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Breast Cancer ,Cancer ,Attention mechanism ,Breast mass segmentation ,Convolutional neural networks ,Deep learning ,Receptive field ,Ultrasound imaging ,Biomedical Engineering ,Electrical and Electronic Engineering ,Medical Biotechnology - Abstract
In this work, we propose a deep learning method for breast mass segmentation in ultrasound (US). Variations in breast mass size and image characteristics make the automatic segmentation difficult. To address this issue, we developed a selective kernel (SK) U-Net convolutional neural network. The aim of the SKs was to adjust network's receptive fields via an attention mechanism, and fuse feature maps extracted with dilated and conventional convolutions. The proposed method was developed and evaluated using US images collected from 882 breast masses. Moreover, we used three datasets of US images collected at different medical centers for testing (893 US images). On our test set of 150 US images, the SK-U-Net achieved mean Dice score of 0.826, and outperformed regular U-Net, Dice score of 0.778. When evaluated on three separate datasets, the proposed method yielded mean Dice scores ranging from 0.646 to 0.780. Additional fine-tuning of our better-performing model with data collected at different centers improved mean Dice scores by ~6%. SK-U-Net utilized both dilated and regular convolutions to process US images. We found strong correlation, Spearman's rank coefficient of 0.7, between the utilization of dilated convolutions and breast mass size in the case of network's expansion path. Our study shows the usefulness of deep learning methods for breast mass segmentation. SK-U-Net implementation and pre-trained weights can be found at github.com/mbyr/bus_seg.
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- 2020
28. Impact of the Covid-19 Pandemic on Changing Communication Behavior of Students
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Gorzelanczyk Piotr, Jurkovič Martin, Szubert Paweł, and Olechnowicz Jolanta
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students mobility ,covid-19 ,pandemic ,transportation ,Transportation engineering ,TA1001-1280 - Abstract
The goal of this article is to assess the views of university students on their mobility in the context of the COVID-19 pandemic. To achieve this goal, a survey was conducted to analyze changes in student mobility patterns before and during the pandemic. The research was conducted in March 2021, during the pandemic, and for its purpose, information was collected on various aspects of student mobility, including the form of study, destination, mode of transportation, and shopping location. The sample group consisted of university students from different backgrounds, and various features, including age, gender, residence, and driver's license status, were considered. In addition, the study examined the impact of COVID-19 on student mobility. The study found that the pandemic has significantly affected student mobility, with a shift towards remote or hybrid learning and preference for cars, bicycles, and walking over public transportation in bigger towns while in smaller towns and rural areas, student mobility behavior has remained relatively unchanged.
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- 2023
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29. Dänisch in Zeiten der Globalisierung – Englische Einflüsse auf die dänischeGegenwartssprache
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Andrzej Szubert
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zapozyczenie ,wpływ języka angielskiego ,duński ,Philology. Linguistics ,P1-1091 ,German literature ,PT1-4897 - Abstract
Languages influence each other, and Danish is no exception in this context. In the times of globalization the influence comes mainly from English. The aim of the present paper is to demonstrate the historical ties between the two above-mentioned languages and, based on multiple linguistic studies, to gauge whether Danish is endangered by English or not. In addition, the paper touches on topics such as language policy, Danish speakers’ attitudes towards English, and statistical research.
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- 2023
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30. Das verschleierte Bild zu Saïs. Von Fiktionen, die wahrlich keine sind
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Rafał Szubert
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cognition ,semantics ,philosophy of language ,terminologisation ,Philology. Linguistics ,P1-1091 ,German literature ,PT1-4897 - Abstract
In the epistemological consideration of the function of language, an attempt is made to record how man (the author) linguistically gives existence to his thoughts. In my contribution, I will address the structu- ral dependence of the meaning of the term fiction in private law on the choice of the reference variable on which this term is based. With reference to the conference theme, I will discuss the interaction of different factors in the linguistic formulation of a concept that is central to private law. Epistemological, ontological, historical, etymological and axiological factors will be dealt with. The conclusion of the lecture will argue for the assumption that knowledge of unadulterated truth should not be sought in fragmented images.
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- 2023
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31. Zinc controls operator affinity of human transcription factor YY1 by mediating dimerization via its N-terminal region
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Figiel, Małgorzata, Szubert, Filip, Luchinat, Enrico, Bonarek, Piotr, Baranowska, Anna, Wajda-Nikiel, Katarzyna, Wilamowski, Mateusz, Miłek, Piotr, Dziedzicka-Wasylewska, Marta, Banci, Lucia, and Górecki, Andrzej
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- 2023
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32. COVAC1 phase 2a expanded safety and immunogenicity study of a self-amplifying RNA vaccine against SARS-CoV-2
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Szubert, Alex J., Pollock, Katrina M., Cheeseman, Hannah M., Alagaratnam, Jasmini, Bern, Henry, Bird, Olivia, Boffito, Marta, Byrne, Ruth, Cole, Tom, Cosgrove, Catherine A., Faust, Saul N., Fidler, Sarah, Galiza, Eva, Hassanin, Hana, Kalyan, Mohini, Libri, Vincenzo, McFarlane, Leon R., Milinkovic, Ana, O'Hara, Jessica, Owen, David R., Owens, Daniel, Pacurar, Mihaela, Rampling, Tommy, Skene, Simon, Winston, Alan, Woolley, James, Yim, Yee Ting N., Dunn, David T., McCormack, Sheena, and Shattock, Robin J.
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- 2023
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33. Genomic evidence that a sexually selected trait captures genome-wide variation and facilitates the purging of genetic load
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Parrett, Jonathan M., Chmielewski, Sebastian, Aydogdu, Eylem, Łukasiewicz, Aleksandra, Rombauts, Stephane, Szubert-Kruszyńska, Agnieszka, Babik, Wiesław, Konczal, Mateusz, and Radwan, Jacek
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- 2022
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34. High-power Piezoelectric Tuner Driver for Lorentz Force Compensation
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Makowski, Dariusz, Mielczarek, Aleksander, Perek, Piotr, Szubert, Aleksander, Plewinski, Pawel, Jablonski, Grzegorz, Cichalewski, Wojciech, and Napieralski, Andrzej
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Physics - Instrumentation and Detectors - Abstract
Superconducting Radio Frequency (SRF) cavities are used in modern accelerators to efficiently accelerate particles. When cavity is supplied with pulsed RF field it undergoes a mechanical strain due to the Lorentz force. The resulting deformation causes dynamic detuning whose amplitude depends on mechanical properties of the cavity, RF pulse rate and their profile. This effect causes considerable loss of acceleration performance. Therefore, it is usually actively compensated, most commonly with fast piezoelectric actuators. MicroTCA.4 standard was developed to accommodate control and data acquisition electronic systems of large-scale physics applications. The paper presents a design of high-power amplifier implemented using the MicroTCA.4 technology. The design of the driver was optimized for driving large-capacitance piezo actuators. Several possible architectures of the driver are presented and compared, taking into consideration the power and cooling limitations of MicroTCA.4. The design of a two-channel piezo driver and its initial laboratory test results are also discussed., Comment: 2 pages, 3 figures, short form for Real-Time 2018 Conference
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- 2018
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35. Physics Informed Neural Network Code for 2D Transient Problems (PINN-2DT) Compatible with Google Colab.
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Pawel Maczuga, Maciej Skoczen, Przemyslaw Roznawski, Filip Tluszcz, Marcin Szubert, Marcin Los, Witold Dzwinel, Keshav Pingali, and Maciej Paszynski
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- 2023
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36. An analysis of the significance of the lymph node ratio and extracapsular involvement in the prognosis of endometrial cancer patients
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Katarzyna Gorzelnik, Sebastian Szubert, Anna Knafel, Anna Wójcikiewicz, Błażej Nowakowski, Krzysztof Koper, and Łukasz Wicherek
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endometrial cancer ,extracapsular involvement ,lymphadenectomy ,lymph node metastases ,lymph node ratio. ,Medicine - Published
- 2022
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37. Evolving Spatially Aggregated Features from Satellite Imagery for Regional Modeling
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Kriegman, Sam, Szubert, Marcin, Bongard, Josh C., and Skalka, Christian
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Statistics - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Neural and Evolutionary Computing - Abstract
Satellite imagery and remote sensing provide explanatory variables at relatively high resolutions for modeling geospatial phenomena, yet regional summaries are often desirable for analysis and actionable insight. In this paper, we propose a novel method of inducing spatial aggregations as a component of the machine learning process, yielding regional model features whose construction is driven by model prediction performance rather than prior assumptions. Our results demonstrate that Genetic Programming is particularly well suited to this type of feature construction because it can automatically synthesize appropriate aggregations, as well as better incorporate them into predictive models compared to other regression methods we tested. In our experiments we consider a specific problem instance and real-world dataset relevant to predicting snow properties in high-mountain Asia.
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- 2017
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38. Pharmacokinetics of once-daily darunavir/ritonavir in second-line treatment in African children with HIV.
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Tsirizani, Lufina, Naghani, Shaghayegh Mohsenian, Waalewijn, Hylke, Szubert, Alexander, Mulenga, Veronica, Chabala, Chishala, Bwakura-Dangarembizi, Mutsa, Chitsamatanga, Moses, Rutebarika, Diana A, Musiime, Victor, Kasozi, Mariam, Lugemwa, Abbas, Monkiewicz, Lara N, McIlleron, Helen M, Burger, David M, Gibb, Diana M, Denti, Paolo, Wasmann, Roeland E, and Colbers, Angela
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HIV protease inhibitors ,HIV-positive children ,DARUNAVIR ,RITONAVIR ,TENOFOVIR ,LAMIVUDINE - Abstract
Background Darunavir is a potent HIV protease inhibitor with a high barrier to resistance. We conducted a nested pharmacokinetic sub-study within CHAPAS-4 to evaluate darunavir exposure in African children with HIV, taking once-daily darunavir/ritonavir for second-line treatment. Methods We used data from the CHAPAS-4 pharmacokinetic sub-study treating children with once-daily darunavir/ritonavir (600/100 mg if 14–24.9 kg and 800/100 mg if ≥25 kg) with either tenofovir alafenamide fumarate (TAF)/emtricitabine (FTC), abacavir/lamivudine or zidovudine/lamivudine. Steady-state pharmacokinetic sampling was done at 0, 1, 2, 4, 6, 8, 12 and 24 hours after observed darunavir/ritonavir intake. Non-compartmental and population pharmacokinetic analyses were used to describe the data and identify significant covariates. Reference adult pharmacokinetic data were used for comparison. We simulated the World Health Organization (WHO) recommended 600/100 mg darunavir/ritonavir dose for the 25–34.9 kg weight band. Results Data from 59 children with median age and weight 10.9 (range 3.8–14.7) years and 26.0 (14.5–47.0) kg, respectively, were available. A two-compartment disposition model with transit absorption compartments and weight-based allometric scaling of clearance and volume best described darunavir data. Our population achieved geometric mean (%CV) darunavir AUC
0–24h , 94.3(50) mg·h/L and Cmax , 9.1(35) mg/L, above adult reference values and Ctrough , 1.5(111) mg/L, like adult values. The nucleoside reverse-transcriptase inhibitor backbone was not found to affect darunavir concentrations. Simulated WHO-recommended darunavir/ritonavir doses showed exposures equivalent to adults. Higher alpha-1-acid glycoprotein increased binding to darunavir and decreased apparent clearance of darunavir. Conclusions Darunavir exposures achieved in our trial are within safe range. Darunavir/ritonavir can safely be co-administered with TAF/FTC. Both WHO-recommended 600/100 mg and CHAPAS-4 800/100 mg darunavir/ritonavir doses for the 25–34.9 kg weight band offer favourable exposures. The choice between them can depend on tablet availability. [ABSTRACT FROM AUTHOR]- Published
- 2024
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39. Hydrophobic Cellulose-Based Sorbents for Oil/Water Separation †.
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Tomkowiak, Karolina, Mazela, Bartłomiej, Szubert, Zuzanna, and Perdoch, Waldemar
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BIODEGRADABLE materials ,CONTACT angle ,SUSTAINABILITY ,WATER purification ,SORBENTS ,OIL spill cleanup ,WATER vapor - Abstract
The need for sustainable, biodegradable materials to address environmental challenges, such as oil-water separation, is growing. Cellulose-based absorbents offer an eco-friendly alternative to synthetic materials. However, their hydrophobicity must be enhanced for efficient application. In this study, cellulose-based sorbents derived from Kraft and half-bleached chemo-thermomechanical pulp (BCTMP) were hydrophobized using silanization and alkyl ketene dimer (AKD) techniques. Hydrophobic properties were successfully imparted using methyltrimethoxysilane (MTMOS), n-octyltriethoxysilane (NTES), and N-(2-Aminoethyl)-3-aminopropyltrimethoxysilane (AATMS), with water contact angles ranging from 120° to 140°. The water sorption capacity was significantly reduced to below 1 g/g, whereas the oil sorption capacity remained high (19–28 g/g). The most substantial reduction in water vapor absorption (3–6%) was observed for the MTMOS- and AATMS-silanized samples. These results demonstrate the potential of hydrophobized cellulose-based sorbents as sustainable alternatives for oil-water separation, contributing to environmentally friendly water treatment solutions. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Numerical Simulation and Modelling of a Morphing Supercritical Airfoil in a Transonic Flow at High Reynolds Numbers
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Tô, J.-B., Zilli, D. M., Simiriotis, N., Asproulias, I., Szubert, D., Marouf, A., Hoarau, Y., Braza, M., Hirschel, Ernst Heinrich, Founding Editor, Schröder, Wolfgang, Series Editor, Boersma, Bendiks Jan, Editorial Board Member, Fujii, Kozo, Editorial Board Member, Haase, Werner, Editorial Board Member, Leschziner, Michael A., Editorial Board Member, Periaux, Jacques, Editorial Board Member, Pirozzoli, Sergio, Editorial Board Member, Rizzi, Arthur, Editorial Board Member, Roux, Bernard, Editorial Board Member, Shokin, Yurii I., Editorial Board Member, Mäteling, Esther, Managing Editor, Braza, Marianna, editor, Hourigan, Kerry, editor, and Triantafyllou, Michael, editor
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- 2021
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41. WP-5 External Flows—Wing
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Billard, Flavien, Davidson, Todd, Babinsky, Holger, Placek, Robert, Miller, Marek, Ruchała, Paweł, Stryczniewicz, Wit, Kwiatkowski, Tomasz, Stalewski, Wieńczysław, Sznajder, Janusz, Kuprianowicz, Sara, Bernardini, Matteo, Pirozzoli, Sergio, Barakos, George, Zografakis, George, Tartinville, Benoit, Hirsch, Charles, Szubert, Damien, Braza, Marianna, Asproulias, Ioannis, Simiriotis, Nikos, Tô, Jean-Baptiste, Hoarau, Yannick, Hirschel, Ernst Heinrich, Founding Editor, Schröder, Wolfgang, Series Editor, Boersma, Bendiks Jan, Editorial Board Member, Fujii, Kozo, Editorial Board Member, Haase, Werner, Editorial Board Member, Leschziner, Michael A., Editorial Board Member, Periaux, Jacques, Editorial Board Member, Pirozzoli, Sergio, Editorial Board Member, Rizzi, Arthur, Editorial Board Member, Roux, Bernard, Editorial Board Member, Shokin, Yurii I., Editorial Board Member, Mäteling, Esther, Managing Editor, Doerffer, Piotr, editor, Flaszynski, Pawel, editor, Dussauge, Jean-Paul, editor, Babinsky, Holger, editor, Grothe, Patrick, editor, Petersen, Anna, editor, and Billard, Flavien, editor
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- 2021
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42. WP-1 Reference Cases of Laminar and Turbulent Interactions
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Dussauge, Jean-Paul, Bur, Reynald, Davidson, Todd, Babinsky, Holger, Bernardini, Matteo, Pirozzoli, Sergio, Dupont, Pierre, Piponniau, Sébastien, Larchevêque, Lionel, Giepman, Rogier, Schrijer, Ferry, Oudheusden, Bas van, Polivanov, Pavel, Sidorenko, Andrey, Szubert, Damien, Braza, Marianna, Asproulias, Ioannis, Simiriotis, Nikos, Tô, Jean-Baptiste, Hoarau, Yannick, Sansica, Andrea, Sandham, Neil, Hirschel, Ernst Heinrich, Founding Editor, Schröder, Wolfgang, Series Editor, Boersma, Bendiks Jan, Editorial Board Member, Fujii, Kozo, Editorial Board Member, Haase, Werner, Editorial Board Member, Leschziner, Michael A., Editorial Board Member, Periaux, Jacques, Editorial Board Member, Pirozzoli, Sergio, Editorial Board Member, Rizzi, Arthur, Editorial Board Member, Roux, Bernard, Editorial Board Member, Shokin, Yurii I., Editorial Board Member, Mäteling, Esther, Managing Editor, Doerffer, Piotr, editor, Flaszynski, Pawel, editor, Dussauge, Jean-Paul, editor, Babinsky, Holger, editor, Grothe, Patrick, editor, Petersen, Anna, editor, and Billard, Flavien, editor
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- 2021
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43. Safety and immunogenicity of a self-amplifying RNA vaccine against COVID-19: COVAC1, a phase I, dose-ranging trial
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Adams, Kirsty, Amini, Fahimah, Atako, Nafisah B, Bakri, Amalina, Barclay, Wendy, Brodnicki, Elizabeth, Brown, Jonathan C, Byrne, Ruth, Chilvers, Rowena, Coelho, Sofia, Day, Suzanne, Desai, Monica, Dorman, Eleanor, Elliott, Tamara, Flight, Katie E, Fletcher, James, Galang, John, Gohil, Jagruti, Gupta, Aneta, Harlow, Chris, Hu, Kai, Kalyan, Mohini, Lagrue, Dominic, Liscano, Ely, Njenga, Cecilia, Polra, Krunal, Powlette, Derecia A, Randell, Paul, Rauchenberger, Mary, Redknap, Ianto, Ricamara, Maravic, Rogers, Paul, Sallah, Hadijatou, Samnuan, Karnyart, Schumacher, Michael, Shah, Zareena, Shaw, Rachel, Shaw, Thomas, Sivapatham, Stefan, Slater, Susie, Sorley, Kim, Storch, Regina, Tan, Elizabeth, Tan, Tricia, Thielemans, Lieze, Whitely, Sarah, Valentine, Charlotte, Varghese, Jeeva, Vikraman, Asha, Wilkins, Martin, Pollock, Katrina M., Cheeseman, Hannah M., Szubert, Alexander J., Libri, Vincenzo, Boffito, Marta, Owen, David, Bern, Henry, McFarlane, Leon R., O'Hara, Jessica, Lemm, Nana-Marie, McKay, Paul, Rampling, Tommy, Yim, Yee Ting N., Milinkovic, Ana, Kingsley, Cherry, Cole, Tom, Fagerbrink, Susanne, Aban, Marites, Tanaka, Maniola, Mehdipour, Savviz, Robbins, Alexander, Budd, William, Faust, Saul, Hassanin, Hana, Cosgrove, Catherine A., Winston, Alan, Fidler, Sarah, Dunn, David, McCormack, Sheena, and Shattock, Robin J.
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- 2022
- Full Text
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44. Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)
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Panasiak, Ligia, Szubert, Karolina, Polonis, Marcin, and Ocalewicz, Konrad
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- 2022
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45. COVAC1 phase 2a expanded safety and immunogenicity study of a self-amplifying RNA vaccine against SARS-CoV-2Research in context
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Alex J. Szubert, Katrina M. Pollock, Hannah M. Cheeseman, Jasmini Alagaratnam, Henry Bern, Olivia Bird, Marta Boffito, Ruth Byrne, Tom Cole, Catherine A. Cosgrove, Saul N. Faust, Sarah Fidler, Eva Galiza, Hana Hassanin, Mohini Kalyan, Vincenzo Libri, Leon R. McFarlane, Ana Milinkovic, Jessica O'Hara, David R. Owen, Daniel Owens, Mihaela Pacurar, Tommy Rampling, Simon Skene, Alan Winston, James Woolley, Yee Ting N. Yim, David T. Dunn, Sheena McCormack, and Robin J. Shattock
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Self-amplifying RNA ,Vaccine ,SARS-CoV-2 ,Clinical trial ,Safety ,Immunogenicity ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Lipid nanoparticle (LNP) encapsulated self-amplifying RNA (saRNA) is well tolerated and immunogenic in SARS-CoV-2 seronegative and seropositive individuals aged 18–75. Methods: A phase 2a expanded safety and immunogenicity study of a saRNA SARS-CoV-2 vaccine candidate LNP-nCoVsaRNA, was conducted at participating centres in the UK between 10th August 2020 and 30th July 2021. Participants received 1 μg then 10 μg of LNP-nCoVsaRNA, ∼14 weeks apart. Solicited adverse events (AEs) were collected for one week post-each vaccine, and unsolicited AEs throughout. Binding and neutralisating anti-SARS-CoV-2 antibody raised in participant sera was measured by means of an anti-Spike (S) IgG ELISA, and SARS-CoV-2 pseudoneutralisation assay. (The trial is registered: ISRCTN17072692, EudraCT 2020-001646-20). Findings: 216 healthy individuals (median age 51 years) received 1.0 μg followed by 10.0 μg of the vaccine. 28/216 participants were either known to have previous SARS-CoV2 infection and/or were positive for anti-Spike (S) IgG at baseline. Reactogenicity was as expected based on the reactions following licensed COVID-19 vaccines, and there were no serious AEs related to vaccination. 80% of baseline SARS-CoV-2 naïve individuals (147/183) seroconverted two weeks post second immunization, irrespective of age (18–75); 56% (102/183) had detectable neutralising antibodies. Almost all (28/31) SARS-CoV-2 positive individuals had increased S IgG binding antibodies following their first 1.0 μg dose with a ≥0.5log10 increase in 71% (22/31). Interpretation: Encapsulated saRNA was well tolerated and immunogenic in adults aged 18–75 years. Seroconversion rates in antigen naïve were higher than those reported in our dose-ranging study. Further work is required to determine if this difference is related to a longer dosing interval (14 vs. 4 weeks) or dosing with 1.0 μg followed by 10.0 μg. Boosting of S IgG antibodies was observed with a single 1.0 μg injection in those with pre-existing immune responses. Funding: Grants and gifts from the Medical Research Council UKRI (MC_PC_19076), the National Institute for Health Research/Vaccine Task Force, Partners of Citadel and Citadel Securities, Sir Joseph Hotung Charitable Settlement, Jon Moulton Charity Trust, Pierre Andurand, and Restore the Earth.
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- 2023
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46. Bone mineral density among children living with HIV failing first-line anti-retroviral therapy in Uganda: A sub-study of the CHAPAS-4 trial.
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Eva Natukunda, Alex Szubert, Caroline Otike, Imerida Namyalo, Esther Nambi, Alasdair Bamford, Katja Doerholt, Diana M Gibb, Victor Musiime, and Phillipa Musoke
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Medicine ,Science - Abstract
BackgroundChildren living with perinatally acquired HIV (CLWH) survive into adulthood on antiretroviral therapy (ART). HIV, ART, and malnutrition can all lead to low bone mineral density (BMD). Few studies have described bone health among CLWH in Sub-Saharan Africa. We determined the prevalence and factors associated with low BMD among CLWH switching to second-line ART in the CHAPAS-4 trial (ISRCTN22964075) in Uganda.MethodsBMD was determined using dual-energy X-ray Absorptiometry (DXA). BMD Z-scores were adjusted for age, sex, height and race. Demographic characteristics were summarized using median interquartile range (IQR) for continuous variables and proportions for categorical variables. Logistic regression was used to determine the associations between each variable and low BMD.ResultsA total of 159 children were enrolled (50% male) with median age (IQR) 10 (7-12) years, median duration of first -line ART 5.2(3.3-6.8) years; CD4 count 774 (528-1083) cells/mm3, weight-for-age Z-score -1.36 (-2.19, -0.65) and body mass index Z-score (BMIZ) -1.31 (-2.06, -0.6). Low (Z-score≤ -2) total body less head (TBLH) BMD was observed in 28 (18%) children, 21(13%) had low lumbar spine (LS) BMD, and15 (9%) had both. Low TBLH BMD was associated with increasing age (adjusted odds ratio [aOR] 1.37; 95% CI: 1.13-1.65, p = 0.001), female sex (aOR: 3.8; 95% CL: 1.31-10.81, p = 0.014), low BMI (aOR 0.36:95% CI: 0.21-0.61, pConclusionNearly 20% CLWH failing first-line ART had low BMD which was associated with female sex, older age, first-line ZDV exposure, and low BMI. Prevention, monitoring, and implications following transition to adult care should be prioritized to identify poor bone health in HIV+adolescents entering adulthood.
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- 2023
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47. Range of Resection in Endometrial Cancer—Clinical Issues of Made-to-Measure Surgery
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Horala, Agnieszka, primary, Szubert, Sebastian, additional, and Nowak-Markwitz, Ewa, additional
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- 2024
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48. Zur Sprache der sogenannten phraseologischen Wortverbindungen in juristischen Texten am Beispiel des Ausdrucks „die juristische Person“
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Szubert, Rafał, primary
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- 2024
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49. The Role of Reentrancies in Abstract Meaning Representation Parsing.
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Marco Damonte, Ida Szubert, Shay B. Cohen, and Mark Steedman
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- 2020
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50. Structural Diversity and Biological Activity of Cyanopeptolins Produced by Nostoc edaphicum CCNP1411
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Robert Konkel, Marta Cegłowska, Karolina Szubert, Ewa Wieczerzak, Sofia Iliakopoulou, Triantafyllos Kaloudis, and Hanna Mazur-Marzec
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cyanopeptolin ,cyanobacteria ,proteases inhibition ,anticancer activity ,Biology (General) ,QH301-705.5 - Abstract
Cyanopeptolins (CPs) are one of the most commonly occurring class of cyanobacterial nonribosomal peptides. For the majority of these compounds, protease inhibition has been reported. In the current work, the structural diversity of cyanopeptolins produced by Nostoc edaphicum CCNP1411 was explored. As a result, 93 CPs, including 79 new variants, were detected and structurally characterized based on their mass fragmentation spectra. CPs isolated in higher amounts were additionally characterized by NMR. To the best of our knowledge, this is the highest number of cyanopeptides found in one strain. The biological assays performed with the 34 isolated CPs confirmed the significance of the amino acid located between Thr and the unique 3-amino-6-hydroxy-2-piperidone (Ahp) on the activity of the compounds against serine protease and HeLa cancer cells.
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- 2023
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