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5. GEE-TGDR: A longitudinal feature selection algorithm and its application to lncRNA expression profiles for psoriasis patients treated with immune therapies

Author

Tian, Suyan, Wang, Chi, and Suarez-Farinas, Mayte

Subjects
Statistics - Applications
Abstract

With the fast evolution of high-throughput technology, longitudinal gene expression experiments have become affordable and increasingly common in biomedical fields. Generalized estimating equation (GEE) approach is a widely used statistical method for the analysis of longitudinal data. Feature selection is imperative in longitudinal omics data analysis. Among a variety of existing feature selection methods, an embedded method, namely, threshold gradient descent regularization (TGDR) stands out due to its excellent characteristics. An alignment of GEE with TGDR is a promising area for the purpose of identifying relevant markers that can explain the dynamic changes of outcomes across time. In this study, we proposed a new novel feature selection algorithm for longitudinal outcomes:GEE-TGDR. In the GEE-TGDR method, the corresponding quasi-likelihood function of a GEE model is the objective function to be optimized and the optimization and feature selection are accomplished by the TGDR method. We applied the GEE-TGDR method a longitudinal lncRNA gene expression dataset that examined the treatment response of psoriasis patients to immune therapy. Under different working correlation structures, a list including 10 relevant lncRNAs were identified with a predictive accuracy of 80 % and meaningful biological interpretation. To conclude, a widespread application of the proposed GEE-TGDR method in omics data analysis is anticipated.

Published
2020

7. Transcriptional atlas of the human immune response to 13 vaccines reveals a common predictor of vaccine-induced antibody responses

Author

Hagan, Thomas, Gerritsen, Bram, Tomalin, Lewis E., Fourati, Slim, Mulè, Matthew P., Chawla, Daniel G., Rychkov, Dmitri, Henrich, Evan, Miller, Helen E. R., Diray-Arce, Joann, Dunn, Patrick, Lee, Audrey, Levy, Ofer, Gottardo, Raphael, Sarwal, Minne M., Tsang, John S., Suárez-Fariñas, Mayte, Sékaly, Rafick-Pierre, Kleinstein, Steven H., and Pulendran, Bali

Published
2022
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8. Pan-vaccine analysis reveals innate immune endotypes predictive of antibody responses to vaccination

Author

Fourati, Slim, Tomalin, Lewis E., Mulè, Matthew P., Chawla, Daniel G., Gerritsen, Bram, Rychkov, Dmitry, Henrich, Evan, Miller, Helen E. R., Hagan, Thomas, Diray-Arce, Joann, Dunn, Patrick, Levy, Ofer, Gottardo, Raphael, Sarwal, Minnie M., Tsang, John S., Suárez-Fariñas, Mayte, Pulendran, Bali, Kleinstein, Steven H., and Sékaly, Rafick-Pierre

Published
2022
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9. Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity

Author

Uzzan, Mathieu, Martin, Jerome C., Mesin, Luka, Livanos, Alexandra E., Castro-Dopico, Tomas, Huang, Ruiqi, Petralia, Francesca, Magri, Giuliana, Kumar, Shashi, Zhao, Qing, Rosenstein, Adam K., Tokuyama, Minami, Sharma, Keshav, Ungaro, Ryan, Kosoy, Roman, Jha, Divya, Fischer, Jeremy, Singh, Harpriya, Keir, Mary E., Ramamoorthi, Nandhini, Gorman, William E. O’, Cohen, Benjamin L., Rahman, Adeeb, Cossarini, Francesca, Seki, Akihiro, Leyre, Louise, Vaquero, Sonia Tejedor, Gurunathan, Sakteesh, Grasset, Emilie K., Losic, Bojan, Dubinsky, Marla, Greenstein, Alexander J., Gottlieb, Zoe, Legnani, Peter, George, James, Irizar, Haritz, Stojmirovic, Aleksandar, Brodmerkel, Carrie, Kasarkis, Andrew, Sands, Bruce E., Furtado, Glaucia, Lira, Sergio A., Tuong, Zewen K., Ko, Huaibin M., Cerutti, Andrea, Elson, Charles O., Clatworthy, Menna R., Merad, Miriam, Suárez-Fariñas, Mayte, Argmann, Carmen, Hackney, Jason A., Victora, Gabriel D., Randolph, Gwendalyn J., Kenigsberg, Ephraim, Colombel, Jean Frederic, and Mehandru, Saurabh

Published
2022
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11. The Immune Signatures data resource, a compendium of systems vaccinology datasets

Author

Diray-Arce, Joann, Miller, Helen E. R., Henrich, Evan, Gerritsen, Bram, Mulè, Matthew P., Fourati, Slim, Gygi, Jeremy, Hagan, Thomas, Tomalin, Lewis, Rychkov, Dmitry, Kazmin, Dmitri, Chawla, Daniel G., Meng, Hailong, Dunn, Patrick, Campbell, John, Sarwal, Minnie, Tsang, John S., Levy, Ofer, Pulendran, Bali, Sekaly, Rafick, Floratos, Aris, Gottardo, Raphael, Kleinstein, Steven H., and Suárez-Fariñas, Mayte

Published
2022
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13. Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets

Author

Di'Narzo, Antonio F., Houten, Sander M., Kosoy, Roman, Huang, Ruiqi, Vaz, Frédéric M., Hou, Ruixue, Wei, Gabrielle, Wang, Wenhui, Comella, Phillip H., Dodatko, Tetyana, Rogatsky, Eduard, Stojmirovic, Aleksandar, Brodmerkel, Carrie, Perrigoue, Jacqueline, Hart, Amy, Curran, Mark, Friedman, Joshua R., Zhu, Jun, Agrawal, Manasi, Cho, Judy, Ungaro, Ryan, Dubinsky, Marla C., Sands, Bruce E., Suárez-Fariñas, Mayte, Schadt, Eric E., Colombel, Jean-Frédéric, Kasarskis, Andrew, Hao, Ke, and Argmann, Carmen

Published
2022
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14. Deep resolution of clinical, cellular and transcriptomic inflammatory markers of psoriasis over 52 weeks of interleukin-17A inhibition by secukinumab.

Author

Tomalin, Lewis E, Kolbinger, Frank, Suprun, Maria, Wharton, Keith A, Hartmann, Nicole, Peters, Thomas, Glueck, Anton, Milutinovic, Marina, Krueger, James G, and Suárez-Fariñas, Mayte

Subjects
DISEASE duration, SKIN biopsy, PSORIASIS, PHENOTYPES, TRANSCRIPTOMES
Abstract

Background Secukinumab, an anti-interleukin (IL)-17A monoclonal antibody, induces histological and molecular resolution of psoriatic plaques by 12 weeks. However, the long-term effects of secukinumab on the molecular resolution of psoriatic inflammation remain unknown. Objectives To investigate the molecular resolution of psoriasis following 52 weeks of secukinumab treatment. Methods This was a two-part phase II randomized double-blinded placebo-controlled 52-week study of patients with moderate-to-severe psoriasis receiving secukinumab 300 mg (NCT01537432). Psoriatic lesional and nonlesional skin biopsies were obtained at baseline and at weeks 12 and 52, and the composition of the residual disease genomic profile (RDGP; i.e. 'molecular scar') of biopsies from secukinumab responders analysed. Results After 52 weeks of treatment, 14 of 24 enrolled patients were considered to be clinical responders [≥ 75% improvement in Psoriasis Area and Severity Index (PASI 75)], 4 of 24 were considered to be nonresponders (< PASI 75) and 6 of 24 patients were lost to follow-up; both the histological and transcriptomic profiles of PASI 75 responders improved from week 12 to week 52. RDGP transcripts of histological responders only partially overlapped between weeks 12 and 52, despite a similar number of transcripts in each RDGP; specifically, four novel transcript subsets showed distinct expression dynamics between weeks 12 and 52 ('slow-resolving', 'recurring', 'persistent' and 'resolved'), with anti-inflammatory and immunomodulatory genes (e.g. SOCS1 , CD207 and IL37) notably restored at week 52. Shorter disease duration prior to secukinumab treatment coincided with greater transcript improvements at weeks 12 and 52. Conclusions Secukinumab improves the histological and molecular phenotype of psoriatic lesional skin up to 52 weeks of treatment; these results suggest possible mechanisms that drive long-term control of psoriasis. [ABSTRACT FROM AUTHOR]

Published
2024
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15. Investigation of plaque psoriasis relapse after secukinumab withdrawal in patients from two phase III studies.

Author

Lebwohl, Mark, Iversen, Lars, Eidsmo, Liv, Krueger, James G, Suárez-Fariñas, Mayte, Tomalin, Lewis, Kolbinger, Frank, You, Ruquan, and Milutinovic, Marina

Subjects
TERMINATION of treatment, DISEASE duration, DISEASE relapse, CLINICAL trials, PSORIASIS
Abstract

Background Secukinumab is effective against a range of psoriatic manifestations. Investigating psoriasis (PsO) relapse following secukinumab discontinuation could provide insights into long-term PsO remission. Objectives To examine PsO relapse rates on treatment discontinuation following 1 year of secukinumab treatment. Methods This study (clinical trial number: NCT01544595) is an extension of the phase III ERASURE/FIXTURE studies in patients with moderate-to-severe plaque PsO. After 1 year of secukinumab 300 mg or 150 mg treatment, participants who had responded to treatment with a ≥ 75% reduction in Psoriasis Area and Severity Index (PASI 75) at week 52 were randomly assigned to receive placebo (n = 120 and n = 100, respectively). On relapse, patients receiving placebo were switched to their previous secukinumab dose. The study primary outcome was the nonrelapse rate after secukinumab withdrawal. Results Following the last dose of secukinumab 300 mg, 20.8% (25/120) and 10.0% (12/120) of patients who switched to placebo did not relapse at 1 and 2 years after discontinuation, respectively. Patients who received secukinumab 150 mg for 1 year showed a lower proportion of nonrelapse following treatment discontinuation [14% (14/100) and 6% (6/100)] at 1 and 2 years, respectively. Patients who did not relapse maintained low mean PASI (2.8) at 1 year drug free vs. baseline (20.9); 1.7 at 2 years drug free vs. baseline (19.2), following an initial 52-week treatment with secukinumab 300 mg. Disease duration (P = 0.02) and severity (P = 0.02) were significantly associated with time to relapse in patients initially treated with secukinumab 300 mg; patients with shorter disease duration and lower baseline PASI remained relapse-free for longer. Conclusions Following discontinuation of secukinumab, a proportion of patients stayed relapse-free. Further, patients with shorter disease duration remained relapse-free for longer, suggesting that earlier treatment with secukinumab may result in long-term clinical control of moderate-to-severe PsO. [ABSTRACT FROM AUTHOR]

Published
2024
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16. Heterogeneous Effects of Continuous Positive Airway Pressure in Non-Sleepy Obstructive Sleep Apnea on Cardiovascular Disease Outcomes: Post Hoc Machine Learning Analysis of the ISAACC Trial (ECSACT Study).

Author

Cohen, Oren, Sánchez-de-la-Torre, Manuel, Al-Taie, Zainab, Khan, Samira, Kundel, Vaishnavi, Kovacic, Jason C., Gracia-Lavedan, Esther, De Batlle, Jordi, Nadkarni, Girish, Barbé, Ferran, Suárez-Fariñas, Mayte, and Shah, Neomi A.

Subjects
CONTINUOUS positive airway pressure, SLEEP apnea syndromes, CARDIOVASCULAR diseases, TREATMENT effect heterogeneity, ACUTE coronary syndrome
Abstract

Rationale: Randomized controlled trials of continuous positive airway pressure (CPAP) therapy for cardiovascular disease (CVD) prevention among patients with obstructive sleep apnea (OSA) have been largely neutral. However, given that OSA is a heterogeneous disease, there may be unidentified subgroups demonstrating differential treatment effects. Objectives: We sought to apply a novel data-drive approach to identify nonsleepy OSA subgroups with heterogeneous effects of CPAP on CVD outcomes within the Impact of Sleep Apnea Syndrome in the Evolution of Acute Coronary Syndrome (ISAACC) study. Methods: Participants were randomly partitioned into two datasets. One for training (70%) our machine-learning model and a second (30%) for validation of significant findings. Model-based recursive partitioning was applied to identify subgroups with heterogeneous treatment effects. Survival analysis was conducted to compare treatment (CPAP vs. usual care [UC]) outcomes within subgroups. Results: A total of 1,224 nonsleepy OSA participants were included. Of 55 features entered into our model, only two appeared in the final model (i.e., average OSA event duration and hypercholesterolemia). Among participants at or below the model-derived average event duration threshold (19.5 s), CPAP was protective for a composite of CVD events (training hazard ratio [HR], 0.46; P = 0.002). For those with longer event duration (>19.5 s), an additional split occurred by hypercholesterolemia status. Among participants with longer event duration and hypercholesterolemia, CPAP resulted in more CVD events compared with UC (training HR, 2.24; P = 0.011). The point estimate for this harmful signal was also replicated in the testing dataset (HR, 1.83; P = 0.118). Conclusions: We discovered subgroups of nonsleepy OSA participants within the ISAACC study with heterogeneous effects of CPAP. Among the training dataset, those with longer OSA event duration and hypercholesterolemia had nearly 2.5 times more CVD events with CPAP compared with UC, whereas those with shorter OSA event duration had roughly half the rate of CVD events if randomized to CPAP. [ABSTRACT FROM AUTHOR]

Published
2024
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17. Molecular Characterization of Limited Ulcerative Colitis Reveals Novel Biology and Predictors of Disease Extension

Author

Argmann, Carmen, Tokuyama, Minami, Ungaro, Ryan C., Huang, Ruiqi, Hou, Ruixue, Gurunathan, Sakteesh, Kosoy, Roman, Di’Narzo, Antonio, Wang, Wenhui, Losic, Bojan, Irizar, Haritz, Peters, Lauren, Stojmirovic, Aleksandar, Wei, Gabrielle, Comella, Phillip H., Curran, Mark, Brodmerkel, Carrie, Friedman, Joshua R., Hao, Ke, Schadt, Eric E., Zhu, Jun, Cho, Judy, Harpaz, Noam, Dubinsky, Marla C., Sands, Bruce E., Kasarskis, Andrew, Mehandru, Saurabh, Colombel, Jean-Frederic, and Suárez-Fariñas, Mayte

Published
2021
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19. Heterogeneous Effects of CPAP in Non-Sleepy OSA on CVD Outcomes: Post-hoc Machine Learning Analysis of the ISAACC Trial (ECSACT Study)

Author

Cohen, Oren, primary, Sánchez-de-la-Torre, Manuel, additional, Al-Taie, Zainab, additional, Khan, Samira, additional, Kundel, Vaishnavi, additional, Kovacic, Jason C., additional, Gracia-Lavedan, Esther, additional, de Batlle, Jordi, additional, Nadkarni, Girish, additional, Barbé, Ferran, additional, Suárez-Fariñas, Mayte, additional, and Shah, Neomi A, additional

Published
2024
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20. Gene coexpression networks reveal a broad role for lncRNAs in inflammatory bowel disease

Author

Johnson, John L., primary, Sargsyan, Davit, additional, Neiman, Eric M., additional, Hart, Amy, additional, Stojmirovic, Aleksandar, additional, Kosoy, Roman, additional, Irizar, Haritz, additional, Suárez-Fariñas, Mayte, additional, Song, Won-Min, additional, Argmann, Carmen, additional, Avey, Stefan, additional, Shmuel-Galia, Liraz, additional, Vierbuchen, Tim, additional, Bongers, Gerold, additional, Sun, Yu, additional, Edelstein, Leonard, additional, Perrigoue, Jacqueline, additional, Towne, Jennifer E., additional, Hall, Aisling O’Hara, additional, Fitzgerald, Katherine A., additional, and Hoebe, Kasper, additional

Published
2024
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23. A molecular single-cell lung atlas of lethal COVID-19

Author

Melms, Johannes C., Biermann, Jana, Huang, Huachao, Wang, Yiping, Nair, Ajay, Tagore, Somnath, Katsyv, Igor, Rendeiro, André F., Amin, Amit Dipak, Schapiro, Denis, Frangieh, Chris J., Luoma, Adrienne M., Filliol, Aveline, Fang, Yinshan, Ravichandran, Hiranmayi, Clausi, Mariano G., Alba, George A., Rogava, Meri, Chen, Sean W., Ho, Patricia, Montoro, Daniel T., Kornberg, Adam E., Han, Arnold S., Bakhoum, Mathieu F., Anandasabapathy, Niroshana, Suárez-Fariñas, Mayte, Bakhoum, Samuel F., Bram, Yaron, Borczuk, Alain, Guo, Xinzheng V., Lefkowitch, Jay H., Marboe, Charles, Lagana, Stephen M., Del Portillo, Armando, Tsai, Emily J., Zorn, Emmanuel, Markowitz, Glen S., Schwabe, Robert F., Schwartz, Robert E., Elemento, Olivier, Saqi, Anjali, Hibshoosh, Hanina, Que, Jianwen, and Izar, Benjamin

Published
2021
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25. Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2–related Disease

Author

Suárez-Fariñas, Mayte, Tokuyama, Minami, Wei, Gabrielle, Huang, Ruiqi, Livanos, Alexandra, Jha, Divya, Levescot, Anais, Irizar, Haritz, Kosoy, Roman, Cording, Sascha, Wang, Wenhui, Losic, Bojan, Ungaro, Ryan C., Di’Narzo, Antonio, Martinez-Delgado, Gustavo, Suprun, Maria, Corley, Michael J., Stojmirovic, Aleksandar, Houten, Sander M., Peters, Lauren, Curran, Mark, Brodmerkel, Carrie, Perrigoue, Jacqueline, Friedman, Joshua R., Hao, Ke, Schadt, Eric E., Zhu, Jun, Ko, Huaibin M., Cho, Judy, Dubinsky, Marla C., Sands, Bruce E., Ndhlovu, Lishomwa, Cerf-Bensusan, Nadine, Kasarskis, Andrew, Colombel, Jean-Frederic, Harpaz, Noam, Argmann, Carmen, and Mehandru, Saurabh

Published
2021
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29. Molecular Phenotyping Small (Asian) versus Large (Western) Plaque Psoriasis Shows Common Activation of IL-17 Pathway Genes but Different Regulatory Gene Sets.

Author

Kim, Jaehwan, Oh, Chil-Hwan, Jeon, Jiehyun, Baek, Yoosang, Ahn, Jaewoo, Kim, Dong Joo, Lee, Hyun-Soo, Correa da Rosa, Joel, Suárez-Fariñas, Mayte, Lowes, Michelle A, and Krueger, James G

Subjects
Humans, Psoriasis, Disease Progression, Interleukin-17, Biopsy, Needle, Immunohistochemistry, Severity of Illness Index, Risk Assessment, Cohort Studies, Sampling Studies, Signal Transduction, Gene Expression Regulation, Phenotype, Genes, Regulator, Female, Male, Asian People, White People, Clinical Research, Genetics, Autoimmune Disease, Underpinning research, 2.1 Biological and endogenous factors, Aetiology, 1.1 Normal biological development and functioning, Skin, Clinical Sciences, Oncology and Carcinogenesis, Dermatology & Venereal Diseases
Abstract

Psoriasis is present in all racial groups, but in varying frequencies and severity. Considering that small plaque psoriasis is specific to the Asian population and severe psoriasis is more predominant in the Western population, we defined Asian small and intermediate plaque psoriasis as psoriasis subtypes and compared their molecular signatures with the classic subtype of Western large plaque psoriasis. Two different characteristics of psoriatic spreading-vertical growth and radial expansion-were contrasted between subtypes, and genomic data were correlated to histologic and clinical measurements. Compared with Western large plaque psoriasis, Asian small plaque psoriasis revealed limited psoriasis spreading, but IL-17A and IL-17-regulated proinflammatory cytokines were highly expressed. Paradoxically, IL-17A and IL-17-regulated proinflammatory cytokines were lower in Western large plaque psoriasis, whereas T cells and dendritic cells in total psoriatic skin area were exponentially increased. Negative immune regulators, such as CD69 and FAS, were decreased in both Western large plaque psoriasis and psoriasis with accompanying arthritis or obesity, and their expression was correlated with psoriasis severity index. Based on the disease subtype comparisons, we propose that dysregulation of T-cell expansion enabled by downregulation of immune negative regulators is the main mechanism for development of large plaque psoriasis subtypes.

Published
2016

30. Evidence That Anemia Accelerates Aortic Stenosis Progression Via Shear-Induced TGF-β1 Activation

Author

Subramani, Kumar, primary, Bander, Jeffrey, additional, Chen, Sixia, additional, Suárez-Fariñas, Mayte, additional, Venkatesan, Thamizhiniyan, additional, Subrahmanian, Sandeep, additional, Varshney, Rohan, additional, Kini, Annapoorna, additional, Sharma, Samin, additional, Rifkin, Daniel B., additional, Cho, Jaehyung, additional, Coller, Barry S., additional, and Ahamed, Jasimuddin, additional

Published
2023
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34. Multi-TGDR: a regularization method for multi-class classification in microarray experiments

Author

Tian, Suyan and Suárez-Fariñas, Mayte

Subjects
Statistics - Methodology
Abstract

Background With microarray technology becoming mature and popular, the selection and use of a small number of relevant genes for accurate classification of samples is a hot topic in the circles of biostatistics and bioinformatics. However, most of the developed algorithms lack the ability to handle multiple classes, which arguably a common application. Here, we propose an extension to an existing regularization algorithm called Threshold Gradient Descent Regularization (TGDR) to specifically tackle multi-class classification of microarray data. When there are several microarray experiments addressing the same/similar objectives, one option is to use meta-analysis version of TGDR (Meta-TGDR), which considers the classification task as combination of classifiers with the same structure/model while allowing the parameters to vary across studies. However, the original Meta-TGDR extension did not offer a solution to the prediction on independent samples. Here, we propose an explicit method to estimate the overall coefficients of the biomarkers selected by Meta-TGDR. This extension permits broader applicability and allows a comparison between the predictive performance of Meta-TGDR and TGDR using an independent testing set. Results Using real-world applications, we demonstrated the proposed multi-TGDR framework works well and the number of selected genes is less than the sum of all individualized binary TGDRs. Additionally, Meta-TGDR and TGDR on the batch-effect adjusted pooled data approximately provided same results. By adding Bagging procedure in each application, the stability and good predictive performance are warranted. Conclusions Compared with Meta-TGDR, TGDR is less computing time intensive, and requires no samples of all classes in each study. On the adjusted data, it has approximate same predictive performance with Meta-TGDR. Thus, it is highly recommended.

Published
2013
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35. IL-17A inhibition by secukinumab induces early clinical, histopathologic, and molecular resolution of psoriasis

Author

Krueger, James G., Wharton, Keith A., Jr., Schlitt, Thomas, Suprun, Maria, Torene, Rebecca I., Jiang, Xiaoyu, Wang, Claire Q., Fuentes-Duculan, Judilyn, Hartmann, Nicole, Peters, Thomas, Koroleva, Irina, Hillenbrand, Rainer, Letzkus, Martin, Yu, Xiaojing, Li, Yue, Glueck, Anton, Hasselberg, Anke, Flannery, Brian, Suárez-Fariñas, Mayte, and Hueber, Wolfgang

Published
2019
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38. Dupilumab progressively improves systemic and cutaneous abnormalities in patients with atopic dermatitis

Author

Guttman-Yassky, Emma, Bissonnette, Robert, Ungar, Benjamin, Suárez-Fariñas, Mayte, Ardeleanu, Marius, Esaki, Hitokazu, Suprun, Maria, Estrada, Yeriel, Xu, Hui, Peng, Xiangyu, Silverberg, Jonathan I., Menter, Alan, Krueger, James G., Zhang, Rick, Chaudhry, Usman, Swanson, Brian, Graham, Neil M.H., Pirozzi, Gianluca, Yancopoulos, George D., and D. Hamilton, Jennifer D.

Published
2019
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42. Author Correction: A molecular single-cell lung atlas of lethal COVID-19

Author

Melms, Johannes C., Biermann, Jana, Huang, Huachao, Wang, Yiping, Nair, Ajay, Tagore, Somnath, Katsyv, Igor, Rendeiro, André F., Amin, Amit Dipak, Schapiro, Denis, Frangieh, Chris J., Luoma, Adrienne M., Filliol, Aveline, Fang, Yinshan, Ravichandran, Hiranmayi, Clausi, Mariano G., Alba, George A., Rogava, Meri, Chen, Sean W., Ho, Patricia, Montoro, Daniel T., Kornberg, Adam E., Han, Arnold S., Bakhoum, Mathieu F., Anandasabapathy, Niroshana, Suárez-Fariñas, Mayte, Bakhoum, Samuel F., Bram, Yaron, Borczuk, Alain, Guo, Xinzheng V., Lefkowitch, Jay H., Marboe, Charles, Lagana, Stephen M., Del Portillo, Armando, Tsai, Emily J., Zorn, Emmanuel, Markowitz, Glen S., Schwabe, Robert F., Schwartz, Robert E., Elemento, Olivier, Saqi, Anjali, Hibshoosh, Hanina, Que, Jianwen, and Izar, Benjamin

Published
2021
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43. Myeloid cell influx into the colonic epithelium is associated with disease severity and non-response to anti-Tumor Necrosis Factor Therapy in patients with Ulcerative Colitis

Author

Jha, Divya, primary, Al-Taie, Zainab, additional, Krek, Azra, additional, Eshghi, Shadi Toghi, additional, Fantou, Aurelie, additional, Laurent, Thomas, additional, Tankelevich, Michael, additional, Cao, Xuan, additional, Meringer, Hadar, additional, Livanos, Alexandra E, additional, Tokuyama, Minami, additional, Cossarini, Francesca, additional, Bourreille, Arnaud, additional, Josien, Regis, additional, Hou, Ruixue, additional, Canales-Herrerias, Pablo, additional, Ungaro, Ryan C., additional, Kayal, Maia, additional, Marion, James, additional, Polydorides, Alexandros D, additional, Ko, Huaibin M., additional, D’souza, Darwin, additional, Merand, Raphael, additional, Kim-Schulze, Seunghee, additional, Hackney, Jason A., additional, Nguyen, Allen, additional, McBride, Jacqueline M., additional, Yuan, Guo-Cheng, additional, Colombel, Jean Frederic, additional, Martin, Jerome C., additional, Argmann, Carmen, additional, Suárez-Fariñas, Mayte, additional, Petralia, Francesca, additional, and Mehandru, Saurabh, additional

Published
2023
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46. Supplementary Figure 1 from IL32 Is Progressively Expressed in Mycosis Fungoides Independent of Helper T-cell 2 and Helper T-cell 9 Polarization

Author

Ohmatsu, Hanako, primary, Humme, Daniel, primary, Gulati, Nicholas, primary, Gonzalez, Juana, primary, Möbs, Markus, primary, Suárez-Fariñas, Mayte, primary, Cardinale, Irma, primary, Mitsui, Hiroshi, primary, Guttman-Yassky, Emma, primary, Sterry, Wolfram, primary, and Krueger, James G., primary

Published
2023
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49. Supplementary Figure Legend from IL32 Is Progressively Expressed in Mycosis Fungoides Independent of Helper T-cell 2 and Helper T-cell 9 Polarization

Author

Ohmatsu, Hanako, primary, Humme, Daniel, primary, Gulati, Nicholas, primary, Gonzalez, Juana, primary, Möbs, Markus, primary, Suárez-Fariñas, Mayte, primary, Cardinale, Irma, primary, Mitsui, Hiroshi, primary, Guttman-Yassky, Emma, primary, Sterry, Wolfram, primary, and Krueger, James G., primary

Published
2023
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