3,914 results on '"Qi Shi"'
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2. Integrated proteomic and metabolomic profiling of lymph after trauma-induced hypercoagulopathy and antithrombotic therapy
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Yangkang Zheng, Pengyu Wang, Lin Cong, Qi Shi, Yongjian Zhao, and YongJun Wang
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Trauma-induced hypercoagulopathy ,Thoracic duct lymph ,Proteomics ,Untargeted metabolomics ,Antithrombotic therapy ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract Background Routine coagulation tests are not widely accepted diagnostic criteria of trauma-induced hypercoagulopathy (TIH) due to insensitivity. Lymphatic vessels drain approximately 10% of the interstitial fluid into the lymphatic system and form lymph. Subjective The purpose of this study was to identify the potential lymph biomarkers for TIH. Methods Eighteen male Sprague-Dawley rats were randomly assigned to the sham (non-fractured rats with sham surgery and vehicle treatment), the VEH (fractured rats with vehicle treatment) and the CLO (fractured rats with clopidogrel treatment) group. Thoracic duct lymph was obtained to perform proteomics and untargeted metabolomics. Results A total of 1207 proteins and 16,695 metabolites were identified. The top 5 GO terms of lymph proteomics indicated that oxidative stress and innate immunity were closely associated with TIH and antithrombotic therapy. The top 5 GO terms of lymph metabolomics showed that homocystine and lysophosphatidylcholine were the differential expressed metabolites (DEMs) between the sham and VEH groups, while cholic acid, docosahexaenoic acid, N1-Methyl-2-pyridone-5-carboxamide, isoleucine and testosterone are the DEMs between the VEH and CLO group. Conclusions This study presents the first proteomic and metabolomic profiling of lymph after TIH and antithrombotic therapy, and predicts the possible lymph biomarkers for TIH.
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- 2024
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3. Solvothermal Preparation of Crystal Seeds and Anisotropy-Controlled Growth of Silver Nanoplates
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Zhenbin Zhang, Tanlong Xue, Mingli Qin, Yanzhao Wang, Qi Shi, Lulu Wang, Yanhong Zhao, and Zhimin Yang
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Chemistry ,QD1-999 - Published
- 2024
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4. In-situ synthesis and microstructural evolution of a SiC reinforced Al-50Si composite exhibiting exceptional thermal properties
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Chao Ding, Qi Shi, Huali Hao, Rui Ma, Shukui Li, Changqing Ye, Changyang Yu, Xin Liu, Peng Yu, and Shulong Ye
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In-situ synthesis ,Carbon nanotubes ,SiC/Al-50Si composite ,Microstructure ,Thermal properties ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Incorporating carbon nanotubes (CNTs) into Al-Si alloy to prepare in-situ SiC/Al-Si composites enhances thermal conductivity (TC) and reduces the coefficient of thermal expansion (CTE). However, challenges include CNTs aggregation and uneven SiC distribution. This study uses fluidized bed chemical vapor deposition (FBCVD) to achieve uniform CNTs coverage on Al-50Si powder. Subsequent powder hot extrusion and heat treatment above the eutectic temperature enable a gradual reaction between CNTs and Al/Si atoms, resulting in uniformly dispersed SiC within the SiC/Al-50Si composite. The formation mechanism of in-situ SiC particles and their impact on the microstructure, thermal and mechanical properties of the composite are further investigated. The formation process involves a two-step chemical reaction: lamellar Al4C3 phases transform into lamellar eutectic SiC + Al phases, which then transition into polyhedral SiC particles through epitaxial growth. This in-situ formation of SiC particles also impedes Si growth during heat treatment, refining Si particles and enhancing the composite’s properties. The resulting in-situ SiC/Al-50Si composite exhibits excellent thermal and mechanical properties, including a high TC of ∼162 Wm-1K−1, a low CTE of ∼ 8.7 × 10-6/K, and a good bending strength of approximately 253 MPa at room temperature.
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- 2024
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5. A two-dimensional correlation spectroscopy analysis-based approach for asymptomatic rot detection in stored potatoes using hyperspectral imaging
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Fan Zhang, Wenxiu Wang, Qianyun Ma, Qi Shi, Kexiang Chen, Xinyue Pan, Shiyuan Xie, and Jianfeng Sun
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Hyperspectral imaging ,Two-dimensional correlation spectroscopy ,Fusarium dry rot ,Gleyic stage ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Fusarium dry rot (FDR), which is caused by several Fusarium species, is a major disease affecting potatoes during storage. The study aimed to identify the gleyic stage and monitor rot progression in stored potatoes using a hyperspectral imaging (HSI) system. We evaluated the susceptibility parameters and quality attributes during the infection process and monitored starch, soluble protein, malondialdehyde, and aerobic bacterial contents in all samples. To further characterize the infection process, we collected spectral data on different storage days and then mapped these data using two-dimensional correlation spectroscopy. The results revealed 20 peaks related to these component contents. Then, the quantitative analysis models of these indicators were established based on the 2D correlation synchronization spectrum. The optimal correlation coefficients of the validation set were 0.9273, 0.9634, 0.9470, and 0.9487 for these indicators. Visual analysis was implemented to these indicators, and the content distribution can be effectively observed on hyperspectral images.
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- 2024
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6. Coral reefs of Pakistan: a comprehensive review of anthropogenic threats, climate change, and conservation status
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Ishfaq Ahmad, Pu Guo, Mei-Xia Zhao, Yu Zhong, Xiao-Yun Zheng, Shu-Qi Zhang, Jian-Wen Qiu, Qi Shi, Hong-Qiang Yan, Shi-Chen Tao, and Li-Jia Xu
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marine protected areas (MPAs) ,coral reef restoration ,ecosystem ,marine pollution ,overfishing ,sedimentation ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
The coral reefs along Pakistan’s coastline are of ecological and economic significance. However, they are increasingly threatened by anthropogenic threats and climate change. These vulnerable ecosystems are declining due to various factors such as sedimentation, climate change, overfishing, destructive fishing practices, marine pollution, and tourism development. We found that 29%, 24%, 26%, 16% and 18% of the studies exceeding, marine pollution, overfishing/destructive fishing, coastal tourism, climate change and sedimentation, respectively; thus, indicating inadequate water quality status in part of Pakistan coastal water. These influences lead to several negative impacts, such as jeopardized coral health, decline in biodiversity, and the simplification of reef structures. In response to these threats, conservation efforts are imperative. This literature review provides an in-depth analysis of anthropogenic threats, climate change and the conservation of coral reefs in Pakistan. This review provides suggestions on how the country could better conserve its coral reef ecosystem. These include (1) initiatives such as establishing marine protected areas (MPAs), (2) encouraging sustainable fishing practices and reducing pollution, (3) developing the country as an ecotourism destination and implementing climate change adaptation measures, and (4) community engagement through awareness campaigns and fostering collaboration among, governmental organizations, non-governmental organizations (NGOs) and scientists. These comprehensive conservation policies address human-caused and other challenges, safeguarding their ecological, economic, and cultural relevance for future generations.
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- 2024
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7. Carbon budgets of coral reef ecosystems in the South China Sea
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Hongqiang Yan, Qi Shi, Lijia Xu, Huiling Zhang, Meixia Zhao, and Shichen Tao
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South China Sea ,coral reefs ,carbon budget ,CO2 flux ,CaCO3 ,organic carbon ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
The coral reef ecosystem is one of the most productive ecosystems in the ocean, and is also an important calcium carbonate deposition region. Because excess production is very low in coral reefs, organic carbon reservoirs are very limited. During the calcification process, each mole of CaCO3 will produce 1 mol of CO2, approximately 60% of which will be released into the atmosphere through the sea-air interface. This causes coral reefs to be large inorganic carbon reservoirs, but at the same time, most coral reefs act as atmospheric CO2 sources (which also act as sinks in some coral reefs). Therefore, clarifying the sea-air CO2 exchange flux and carbon storage is critical for understanding the carbon cycle in coral reef ecosystems. In this paper, we summarize the carbon cycle processes in the coral reefs of the South China Sea (SCS) and estimate the total CO2 budget and carbon reserves. According to current research, the coral reefs in this area act as a source of atmospheric CO2, releasing 0.37−1.59 × 1011 g C a-1 into the atmosphere. Owing to their extremely high biological productivity and carbonate productivity, the carbon reserves of coral reefs in the SCS range from 1.66–3.78 × 1012 g C a-1, which is an order of magnitude greater than the CO2 emissions at the sea–air interface. Overall, coral reefs in the SCS are important carbon storage areas. As the current results are still approximate, a more comprehensive and in-depth investigation is needed to clarify the carbon source/sink processes, regulatory mechanisms, and carbon storage capacity of SCS coral reefs.
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- 2024
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8. Studying the spatiotemporal variations of the ecological network and carbon utilization efficiency in Southeast Tibet based on complex network theory
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Qi Shi, Jie Lu, and Jiahua Han
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Southeast Tibet ,Complex network theory ,Ecological spatial network ,Carbon utilization efficiency ,Ecology ,QH540-549.5 - Abstract
Currently, with the gradual advancement of urbanization and industrialization, ecological patches are severely fragmented and corridors are cut off, leading to the construction of regional ecological networks that can connect fragmented patches and corridors with regional characteristics. However, there is limited research on the relationship between ecological networks and Carbon Utilization Efficiency (CUE) based on complex network theory. This paper takes the ecologically fragile Southeast Tibet as the research area and investigates the variation patterns of CUE through the establishment of ecological spatial networks. The Graphab Model is employed to extract the ecological space network of Southeast Tibet. The Graphab Model integrates the complex network with the ecological space network to compute the topological index of ecological nodes and the overall ecological network. Later, MOD17A2HGF GPP and MOD17A2HGF PSNnet data from 2013 to 2021 are used as the primary data for calculating the CUE of ecological nodes. The connection between topological index and ecological nodes is analysed. The results indicate that, with interannual variations, ecological nodes dropped by 15, and the number of ecological galleries decreased by 7. However, the average values of various topological indices showed an increasing trend, suggesting that the ecological remediation items in Southeast Tibet have made some achievements. Nevertheless, the analysis of CUE in Southeast Tibet reveals a downward trend in the carbon fixation rate of vegetation in recent years. Through correlation analysis, it was found that the correlation between various topological indices and CUE was the lowest and insignificant in 2013, while from 2015 to 2021, all topological indices were significantly positively correlated with CUE. Through Principal Component Analysis (PCA), It is recommended to reduce and shorten redundant ecological corridors by aggregating small ecological patches and increasing stepping stone patches, and increase ecological galleries to enhance the carbon fixation ability of plants. This research lays a scientific foundation for addressing ecological issues, landscape patterns, and developing ecological networks in Southeast Tibet.
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- 2024
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9. Local Application of Tanshinone IIA protects mesenchymal stem cells from apoptosis and promotes fracture healing in ovariectomized mice
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Shao Cheng, Xiaohui Hu, Kanghui Sun, Ziyu Huang, Yongjian Zhao, Yueli Sun, Bo Zeng, Jing Wang, Dongfeng Zhao, Sheng Lu, Qi Shi, Yongjun Wang, Weian Zhang, Xinhua Liu, and Bing Shu
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Tanshinone IIA ,Osteoporotic fracture ,Injectable hydrogel ,Mesenchymal stem cell ,Oxidative stress ,Cell apoptosis ,Orthopedic surgery ,RD701-811 ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background Elderly patients suffering from osteoporotic fractures are more susceptible to delayed union or nonunion, and their bodies then are in a state of low-grade chronic inflammation with decreased antioxidant capacity. Tanshinone IIA is widely used in treating cardiovascular and cerebrovascular diseases in China and has anti-inflammatory and antioxidant effects. We aimed to observe the antioxidant effects of Tanshinone IIA on mesenchymal stem cells (MSCs), which play important roles in bone repair, and the effects of local application of Tanshinone IIA using an injectable biodegradable hydrogel on osteoporotic fracture healing. Methods MSCs were pretreated with or without different concentrations of Tanshinone IIA followed by H2O2 treatment. Ovariectomized (OVX) C57BL/6 mice received a mid-shaft transverse osteotomy fracture on the left tibia, and Tanshinone IIA was applied to the fracture site using an injectable hydrogel. Results Tanshinone IIA pretreatment promoted the expression of nuclear factor erythroid 2-related factor 2 and antioxidant enzymes, and inhibited H2O2-induced reactive oxygen species accumulation in MSCs. Furthermore, Tanshinone IIA reversed H2O2-induced apoptosis and decrease in osteogenic differentiation in MSCs. After 4 weeks of treatment with Tanshinone IIA in OVX mice, the bone mineral density of the callus was significantly increased and the biomechanical properties of the healed tibias were improved. Cell apoptosis was decreased and Nrf2 expression was increased in the early stage of callus formation. Conclusions Taken together, these results indicate that Tanshinone IIA can activate antioxidant enzymes to protect MSCs from H2O2-induced cell apoptosis and osteogenic differentiation inhibition. Local application of Tanshinone IIA accelerates fracture healing in ovariectomized mice.
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- 2024
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10. Synthesis of Well-Ordered Functionalized Silicon Microwires Using Displacement Talbot Lithography for Photocatalysis
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Axl Eriksson, Anurag Kawde, Lukas Hrachowina, Sarah R. McKibbin, Qi Shi, Magnus T. Borgström, Thomas Wågberg, Tönu Pullerits, and Jens Uhlig
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Chemistry ,QD1-999 - Published
- 2024
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11. Characteristics of Passenger Stagnation Behavior Spectrum Based on Monitoring Video Data at Ticket Gate in Urban Rail Transit Stations
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Qi SHI, Yong FANG, Hua HU, Zhigang LIU, and Wanxu WEI
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urban rail transit ,station ,ticket gate facilities ,characteristic of passenger stagnation behavior spectrum ,monitoring video data ,Transportation engineering ,TA1001-1280 - Abstract
[Objective] To scientifically set up the ticket gate, improve its actual passing capacity, and reduce the congestion risk caused by abnormal stagnation of the passengers, it is necessary to study the characteristics of passenger stagnation behavior spectrum at the ticket gate in urban rail transit stations. [Method] The video trajectory tracking technology is used to collect the passengers′ moving data from the monitor video at the ticket gate of the urban rail transit station. The passenger stagnation behaviors are determined as the characterization indicators. The passenger stagnation behavior spectrum at the ticket gate in urban rail transit station is established from the three elements i.e. types of the ticket gate, passenger flow and individual stagnation behaviors, and the quartile difference method is used to determine the upper and lower threshold values of the above indicators. The differences of the four characterization indicators of passenger stagnation behaviors are analyzed, including longitudinal and lateral distances from the starting point of passenger stagnation behavior to the center of the gate wing/gate rod, stagnation range, and stagnation time. The characteristics of the stagnation behavior spectrum under different gate types and different passenger flow rate are fully explained and analyzed. [Result & Conclusion] Passengers tend to strand in front of the ticket gate, and the longitudinal distance from the stagnation starting point to the center of the gate wing/ gate rod is much longer than its lateral distance. When the passenger flow rate is larger than 5~10 person times/min, the passenger stagnation range fluctuates the greatest. As the passenger flow increases, the available space for passengers, the stagnation range and the stagnation time decrease.
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- 2024
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12. Multi-modal molecular determinants of clinically relevant osteoporosis subtypes
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Chunchun Yuan, Xiang-Tian Yu, Jing Wang, Bing Shu, Xiao-Yun Wang, Chen Huang, Xia Lv, Qian-Qian Peng, Wen-Hao Qi, Jing Zhang, Yan Zheng, Si-Jia Wang, Qian-Qian Liang, Qi Shi, Ting Li, He Huang, Zhen-Dong Mei, Hai-Tao Zhang, Hong-Bin Xu, Jiarui Cui, Hongyu Wang, Hong Zhang, Bin-Hao Shi, Pan Sun, Hui Zhang, Zhao-Long Ma, Yuan Feng, Luonan Chen, Tao Zeng, De-Zhi Tang, and Yong-Jun Wang
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Cytology ,QH573-671 - Abstract
Abstract Due to a rapidly aging global population, osteoporosis and the associated risk of bone fractures have become a wide-spread public health problem. However, osteoporosis is very heterogeneous, and the existing standard diagnostic measure is not sufficient to accurately identify all patients at risk of osteoporotic fractures and to guide therapy. Here, we constructed the first prospective multi-omics atlas of the largest osteoporosis cohort to date (longitudinal data from 366 participants at three time points), and also implemented an explainable data-intensive analysis framework (DLSF: Deep Latent Space Fusion) for an omnigenic model based on a multi-modal approach that can capture the multi-modal molecular signatures (M3S) as explicit functional representations of hidden genotypes. Accordingly, through DLSF, we identified two subtypes of the osteoporosis population in Chinese individuals with corresponding molecular phenotypes, i.e., clinical intervention relevant subtypes (CISs), in which bone mineral density benefits response to calcium supplements in 2-year follow-up samples. Many snpGenes associated with these molecular phenotypes reveal diverse candidate biological mechanisms underlying osteoporosis, with xQTL preferences of osteoporosis and its subtypes indicating an omnigenic effect on different biological domains. Finally, these two subtypes were found to have different relevance to prior fracture and different fracture risk according to 4-year follow-up data. Thus, in clinical application, M3S could help us further develop improved diagnostic and treatment strategies for osteoporosis and identify a new composite index for fracture prediction, which were remarkably validated in an independent cohort (166 participants).
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- 2024
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13. A novel therapy for fracture healing by increasing lymphatic drainage
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Yangkang Zheng, Pengyu Wang, Li Zhao, Lianping Xing, Hao Xu, Ning Li, Yongjian Zhao, Qi Shi, Qianqian Liang, and YongJun Wang
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Fracture healing ,Lymphatic drainage ,Lymphatic platelet thrombosis ,Podoplanin neutralizing antibody ,VEGFR3 inhibitor ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Background: The musculoskeletal system contains an extensive network of lymphatic vessels. Decreased lymph flow of the draining collecting lymphatics usually occurs in clinic after traumatic fractures. However, whether defects in lymphatic drainage can affect fracture healing is unclear. Methods: To investigate the effect of lymphatic dysfunction on fracture healing, we used a selective VEGFR3 tyrosine kinase inhibitor to treat tibial fractured mice for 5 weeks versus a vehicle-treated control. To ensure successfully establishing deceased lymphatic drainage model for fractured mice, we measured lymphatic clearance by near infrared indocyanine green lymphatic imaging (NIR-ICG) and the volume of the draining popliteal lymph nodes (PLNs) by ultrasound at the whole phases of fracture healing. In addition, hindlimb edema from day 0 to day 7 post-fracture, pain sensation by Hargreaves test at day 1 post-fracture, bone histomorphometry by micro-CT and callus composition by Alcian Blue-Hematoxylin/Orange G staining at day 14 post-fracture, and bone quality by biomechanical testing at day 35 post-fracture were applied to evaluate fracture healing. To promote fracture healing via increasing lymphatic drainage, we then treated fractured mice with anti-mouse podoplanin (PDPN) neutralizing antibody or isotype IgG antibody for 1 week to observe lymphatic drainage function and assess bone repair as methods described above. Results: Compared to vehicle-treated group, SAR-treatment group significantly decreased lymphatic clearance and the volume of draining PLNs. SAR-treatment group significantly increased soft tissue swelling, and reduced bone volume (BV)/tissue volume (TV), trabecular number (Tb.N), woven bone and biomechanical properties of fracture callus. In addition, anti-PDPN treated group significantly reduced the number of CD41+ platelets in PLNs and increased the number of pulsatile lymphatic vessels, lymphatic clearance and the volume of PLNs. Moreover, anti-PDPN treated group significantly reduced hindlimb edema and pain sensation and increased BV/TV, trabecular number (Tb.Th), woven bone and biomechanical properties of fracture callus. Conclusions: Inhibition of proper lymphatic drainage function delayed fracture healing. Use of a anti-PDPN neutralizing antibody reduced lymphatic platelet thrombosis (LPT), increased lymphatic drainage and improved fracture healing. The translational potential of this article: (1) We demonstrated lymphatic drainage function is crucial for fracture healing. (2) To unblock the lymphatic drainage and prevent the risk of bleeding and mortality by blood thinner, we demonstrated PDPN neutralizing antibody is a novel and safe way forward in the treatment of bone fracture healing by eliminating LPT and increasing lymphatic drainage.
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- 2024
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14. Geographical identification of Chinese wine based on chemometrics combined with mineral elements, volatile components and untargeted metabonomics
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Kexiang Chen, Hongtu Xue, Qi Shi, Fan Zhang, Qianyun Ma, Jianfeng Sun, Yaqiong Liu, Yiwei Tang, and Wenxiu Wang
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Wine ,Geographical origin ,Mineral element ,Volatile component ,Untargeted metabolomics ,Machine learning algorithms ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Identifying the geographic origin of a wine is of great importance, as origin fakery is commonplace in the wine industry. This study analyzed the mineral elements, volatile components, and metabolites in wine using inductively coupled plasma-mass spectrometry, headspace solid phase microextraction gas chromatography–mass spectrometry, and ultra-high-performance liquid chromatography-quadrupole-exactive orbitrap mass spectrometry. The most critical variables (5 mineral elements, 13 volatile components, and 51 metabolites) for wine origin classification were selected via principal component analysis and orthogonal partial least squares discriminant analysis. Subsequently, three algorithms—K-nearest neighbors, support vector machine, and random forest —were used to model single and fused datasets for origin identification. These results indicated that fused datasets, based on feature variables (mineral elements, volatile components, and metabolites), achieved the best performance, with predictive rates of 100% for all three algorithms. This study demonstrates the effectiveness of a multi-source data fusion strategy for authenticity identification of Chinese wine.
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- 2024
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15. Updated global epidemiology atlas of human prion diseases
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Li-Ping Gao, Ting-Ting Tian, Kang Xiao, Cao Chen, Wei Zhou, Dong-Lin Liang, Run-Dong Cao, Qi Shi, and Xiao-Ping Dong
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human prion disease ,CJD ,cases ,mortality ,surveillance ,Public aspects of medicine ,RA1-1270 - Abstract
IntroductionHuman prion disease (PrD), a group of fatal and transmissible neurodegenerative diseases, consists of Creutzfeldt–Jakob disease (CJD), kuru, fatal familial insomnia (FFI), Gerstmann-Sträussler-Scheinker disease (GSS), and variably protease-sensitive prionopathy (VPSPr). The emergence of bovine spongiform encephalopathy (BSE) in cattle and variant CJD (vCJD) has greatly threatened public health, both in humans and animals. Since the 1990's, dozens of countries and territories have conducted PrD surveillance programs.MethodsIn this study, the case numbers and alternative trends of different types of PrD globally and in various countries or territories from 1993 to 2020 were collected and analyzed based on the data from the websites of the international and national PrD surveillance programs, as well as from relevant publications.ResultsThe total numbers of the reported PrD and sporadic CJD (sCJD) cases in 34 countries with accessible annual case numbers were 27,872 and 24,623, respectively. The top seven countries in PrD cases were the USA (n = 5,156), France (n = 3,276), Germany (n = 3,212), Italy (n = 2,995), China (n = 2,662), the UK (n = 2,521), Spain (n = 1,657), and Canada (n = 1,311). The annual PrD case numbers and mortalities, either globally or in the countries, showed an increased trend in the past 27 years. Genetic PrD cases accounted for 10.83% of all reported PrD cases; however, the trend varied largely among the different countries and territories. There have been 485 iatrogenic CJD (iCJD) cases and 232 vCJD cases reported worldwide.DiscussionThe majority of the countries with PrD surveillance programs were high- and upper-middle-income countries. However, most low- and lower-middle-income countries in the world did not conduct PrD surveillance or even report PrD cases, indicating that the number of human PrD cases worldwide is markedly undervalued. Active international PrD surveillance for both humans and animals is still vital to eliminate the threat of prion disease from a public health perspective.
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- 2024
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16. Recent advances in living cell nucleic acid probes based on nanomaterials for early cancer diagnosis
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Xuyao Liu, Qi Shi, Peng Qi, Ziming Wang, Tongyue Zhang, Sijia Zhang, Jiayan Wu, Zhaopei Guo, Jie Chen, and Qiang Zhang
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Nucleic acid ,Nanomaterials ,In situ detection ,Living cell ,Early cancer diagnosis ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The early diagnosis of cancer is vital for effective treatment and improved prognosis. Tumor biomarkers, which can be used for the early diagnosis, treatment, and prognostic evaluation of cancer, have emerged as a topic of intense research interest in recent years. Nucleic acid, as a type of tumor biomarker, contains vital genetic information, which is of great significance for the occurrence and development of cancer. Currently, living cell nucleic acid probes, which enable the in situ imaging and dynamic monitoring of nucleic acids, have become a rapidly developing field. This review focuses on living cell nucleic acid probes that can be used for the early diagnosis of tumors. We describe the fundamental design of the probe in terms of three units and focus on the roles of different nanomaterials in probe delivery.
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- 2024
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17. Comprehensive Evaluation of Soil Quality of Different Vegetation Restoration Types in Mountainous Areas of Beijing
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LI Peng, QI Shi, ZHANG Lin, HU Jun, TANG Ying, LU Jinsheng, WANG Xiangyu, LAI Jinlin, LIAO Ruien, ZHANG Dai, and ZHANG Yan
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vegetation restoration ,soil quality index (sqi) ,minimum data set (mds) ,glm ,beijing mountainous areas ,Environmental sciences ,GE1-350 ,Agriculture - Abstract
[Objective] This study is aimed at comprehensively evaluating the soil quality of different vegetation restoration types in the mountainous areas of Beijing, and further identifying the key factors affecting soil quality, so as to provide data support for vegetation restoration and reconstruction in the region. [Methods] The study utilized various vegetation types, including Platycladus orientalis pure forest, Pinus tabulaeformis pure forest, P. orientalis-P. tabulaeformis mixed forest, P. orientalis coniferous and broadleaved mixed forest, P. tabulaeformis coniferous and broadleaved mixed forest, deciduous broad-leaved mixed forest, and non-forest land (CK), with similar stand conditions, as research objects. Fourteen soil physical and chemical indicators were measured to establish the total data set (TDS) for evaluating soil quality. Principal component analysis (PCA) and Pearson correlation analysis were employed to determine the minimum data set (MDS) for soil quality evaluation. Two scoring methods, linear (L) and non-linear (NL), were used to calculate the soil quality index (SQI) and a general linear model (GLM) was employed to identify key factors influencing soil quality. [Results] The bulk density and sand content decreased, while the content of soil nutrients such as organic matter, total nitrogen, total potassium, available nitrogen, and available potassium increased after the vegetation restoration compared with the non-forest land. The screened MDS indicators for soil quality evaluation in the study area were total nitrogen (TN), sand content, total potassium (TK), pH, and available water capacity (AWC). Under the four methods (SQI-LT, SQI-NLT, SQI-LM, and SQI-NLM), the SQI values of different vegetation restoration types were ranked as deciduous broadleaf mixed forest > P. orientalis coniferous and broadleaved mixed forest > P. tabulaeformis pure forest > P. tabulaeformis coniferous and broadleaved mixed forest > P. orientalis-P. tabulaeformis mixed forest > P. orientalis pure forest > non-forest land, and the soil quality significantly improved after vegetation restoration. The soil quality evaluation method of SQI-NLM exhibited better applicability in the mountainous areas of Beijing. Compared with non-forested land, the SQI-NLM of other vegetation restoration types improved by 64%, 48%, 45%, 36%, 33% and 27%, respectively. The GLM model accounted for 85.24% of the total variation in the soil quality index, with vegetation type explaining the largest proportion of the soil quality index (45.09%). [Conclusion] The selection of suitable vegetation restoration types is crucial for improving regional soil quality. In future vegetation restoration efforts, priority should be given to broad-leaved species in tree species selection. Additionally, the choice of silvicultural configuration should depend on the tree species, such as introducing native broad-leaved species into Platycladus orientalis pure forest to form a Platycladus orientalis coniferous and broadleaved mixed forest, or selecting Pinus tabulaeformis pure forest as the optimal silvicultural model.
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- 2024
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18. What are people’s attitudes toward medical insurance fraud whistleblowers? a study from China
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Fangting Chen, Fangmin Deng, Jingran He, Jinpeng Xu, Jian Liu, Qi Shi, Hongyu Zhang, Ting Zhang, Qunhong Wu, Lijun Gao, Guomei Tian, and Zheng Kang
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Medical Insurance Fraud ,Whistleblower ,Attitude ,China ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Purpose Medical insurance fraud has caused huge losses to countries around the world, and public reporting has become an important means to combat medical insurance fraud. The attitude of medical insurance fraud whistleblowers affects people’s reporting behavior, and understanding people’s attitude toward medical insurance fraud whistleblowers provides a basis for further improving the system and policy of public participation in medical insurance fund supervision. Methods We adopted the questionnaire method to conduct a national cross-sectional survey of the Chinese public and analyzed the data using Chi-square tests, Fisher’s exact tests, and binary logistic regression models. Results A total of 837 respondents were included, and 81.8% of the population had a supportive attitude toward medical insurance fraud whistleblowers, with gender, whether they had used medical insurance reimbursement, and present life satisfaction being statistically significant (P
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- 2024
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19. What influences the public’s willingness to report health insurance fraud in familiar or unfamiliar healthcare settings? a cross-sectional study of the young and middle-aged people in China
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Jinpeng Xu, Ting Zhang, Hongyu Zhang, Fangmin Deng, Qi Shi, Jian Liu, Fangting Chen, Jingran He, Qunhong Wu, Zheng Kang, and Guomei Tian
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Health Insurance Fraud ,Willingness to Report ,Healthcare setting ,Familiar or not ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Introduction Young and middle-aged people are important participants in the fight against health insurance fraud. The study aims to investigate the differences in their willingness to report health insurance fraud and the factors influencing it when it occurs in familiar or unfamiliar healthcare settings. Methods Data were obtained from a validated questionnaire from 828 young and middle-aged people. McNemar’s test was used to compare the public’s willingness to report under the two scenarios. Chi-square tests and multiple logistic regression analysis were used to analyze the determinants of individuals’ willingness to report health insurance fraud in different scenarios. Results Young and middle-aged people were more likely to report health insurance fraud in a familiar healthcare setting than in an unfamiliar one (McNemar’s χ²=26.51, P
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- 2024
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20. Impaired synaptic function and hyperexcitability of the pyramidal neurons in the prefrontal cortex of autism-associated Shank3 mutant dogs
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Feipeng Zhu, Qi Shi, Yong-hui Jiang, Yong Q. Zhang, and Hui Zhao
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Shank3 ,Autism spectrum disorder ,Synaptic transmission ,Excitability ,Dog ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background SHANK3 gene is a highly replicated causative gene for autism spectrum disorder and has been well characterized in multiple Shank3 mutant rodent models. When compared to rodents, domestic dogs are excellent animal models in which to study social cognition as they closely interact with humans and exhibit similar social behaviors. Using CRISPR/Cas9 editing, we recently generated a dog model carrying Shank3 mutations, which displayed a spectrum of autism-like behaviors, such as social impairment and heightened anxiety. However, the neural mechanism underlying these abnormal behaviors remains to be identified. Methods We used Shank3 mutant dog models to examine possible relationships between Shank3 mutations and neuronal dysfunction. We studied electrophysiological properties and the synaptic transmission of pyramidal neurons from acute brain slices of the prefrontal cortex (PFC). We also examined dendrite elaboration and dendritic spine morphology in the PFC using biocytin staining and Golgi staining. We analyzed the postsynaptic density using electron microscopy. Results We established a protocol for the electrophysiological recording of canine brain slices and revealed that excitatory synaptic transmission onto PFC layer 2/3 pyramidal neurons in Shank3 heterozygote dogs was impaired, and this was accompanied by reduced dendrite complexity and spine density when compared to wild-type dogs. Postsynaptic density structures were also impaired in Shank3 mutants; however, pyramidal neurons exhibited hyperexcitability. Limitations Causal links between impaired PFC pyramidal neuron function and behavioral alterations remain unclear. Further experiments such as manipulating PFC neuronal activity or restoring synaptic transmission in Shank3 mutant dogs are required to assess PFC roles in altered social behaviors. Conclusions Our study demonstrated the feasibility of using canine brain slices as a model system to study neuronal circuitry and disease. Shank3 haploinsufficiency causes morphological and functional abnormalities in PFC pyramidal neurons, supporting the notion that Shank3 mutant dogs are new and valid animal models for autism research.
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- 2024
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21. Geological characteristics and controlling factors of lithologic reservoirs in southwestern Qaidam Basin
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Yanxiong WU, Jianqin XUE, Qi SHI, Yun YANG, Junlin LIU, Fengchun MA, Xiang LI, and Yanqing WANG
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reservoir formation condition ,controlling factor ,lithologic reservoir ,exploration potential ,qaidam basin ,Geophysics. Cosmic physics ,QC801-809 ,Geology ,QE1-996.5 - Abstract
In recent years, several small and rich lithologic oil and gas reservoirs have been discovered in the saline lacustrine beach bar sand in the Qaidam Basin. In order to expand the exploration scale of lithologic oil and gas reservoirs, find new exploration targets and zones, and increase storage and production of oilfields, based on coring, logging and seismic data, the controlling factors of oil and gas accumulation in lithologic reservoirs are defined, and some exploration succeeding fields of lithologic reservoirs are pointed out. The results show that: The southwestern Qaidam Basin has four favorable conditions for the formation of lithologic reservoirs. The first is the development of three stable ancient slopes, namely, the Qigequan-Hongliuquan, Shaxi-Yuejin, and Zahaquan-Wunan, which are inherited and conducive to the accumulation of oil and gas. The second is the proximity of two hydrocarbon generation centers, Hongshi and Zahaquan, with superior oil source conditions. The third is that the salt lake basin developed large braided river delta, widely distributed shoal-bar sand and algal hill-gray cloud flat deposits, forming two complementary types of reservoirs of clastic rock and carbonate rock. The fourth is the development of a variety of drainage systems, which can form several sets of oil-bearing strata vertically. Controlled by paleo-structural, sedimentary and diagenetic factors, there are four types of lithologic reservoirs in the southwestern Qaidam Basin: updip pinching out, sandstone lens, physical sealing and dolomitization trap. Lithologic reservoirs are controlled by three factors: paleo-structure, high-quality source rock and effective reservoir. Paleo-structure determines the type of lithologic traps and the direction of hydrocarbon migration. The high-quality source rock controls the distribution and scale of lithologic reservoirs and effective reservoir controls the accumulation of lithologic reservoirs. Comprehensive evaluation shows that the braided river delta front sand body is a favorable area for the exploration of lithologic reservoirs in the lower Ganchaigou Formation of the Lower Paleogene, mainly distributed in the basin dip end of Shaxi, Gasi, and Wunan. The dolomitization trap is a favorable area for exploration of lithologic reservoirs in the upper member of lower Ganchaigou Formation of Paleogene, mainly distributed around the Hongshi Sag. The widely distributed beach bar is a favorable area for lithologic oil exploration in the upper Ganchaigou Formation and lower Youshashan Formation of Neogene, mainly distributed in Yingxiongling, Gasi, Zhahaquan, Wunan, and other areas. This understanding supports a series of major breakthroughs in lithologic exploration, such as well Qietan 2 and the new series of Gasi, with important guiding significance for further exploration of lithologic reservoirs in the southwestern Qaidam Basin.
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- 2024
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22. Two Chinese patients of sporadic Creutzfeldt–Jacob disease with a S97N mutation in PRNP gene
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Dong-Lin Liang, Qi Shi, Kang Xiao, Ruhan A, Wei Zhou, and Xiao-Ping Dong
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CJD ,prion ,PRNP ,S97N mutation ,Neurology. Diseases of the nervous system ,RC346-429 ,Biology (General) ,QH301-705.5 - Abstract
ABSTRACTWorldwide, 10–15% human prion disease are genetic and inherited, due to the special mutations or insertions in PRNP gene. Herein, we reported two Chinese patients with rapidly progressive dementia who were referred to the national Creutzfeldt–Jacob disease (CJD) surveillance as suspected CJD. Those two patients displayed sporadic CJD (sCJD)-like clinical phenotype, e.g. rapidly progressive dementia, visional and mental problems, sCJD-associated abnormalities in MRI. A missense mutation was identified in one PRNP allele of these two patients, resulting in a change from serine to asparagine at codon 97 (S97N). RT-QuIC of the cerebrospinal fluid samples from those two cases were positive. It indicates that they are very likely to be prion disease.
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- 2023
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23. Rational Combination of π‐Conjugated and Non‐π‐Conjugated Groups Achieving Strong Nonlinear Optical Response, Large Optical Anisotropy, and UV Light‐Switchable Fluorescence
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Danyang Dou, Qi Shi, Huimin Li, Bingbing Zhang, Daqing Yang, and Ying Wang
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π‐conjugation ,birefringence ,fluorescence ,nonlinear optical ,optical anisotropy ,Science - Abstract
Abstract Combining π‐conjugated and non‐π‐conjugated groups is an important strategy for synthesizing new nonlinear optical (NLO) crystals. However, the second harmonic generation (SHG) response and optical anisotropy can be limited by improper spatial alignment of these functional groups in the crystal structure. In this work, it is revealed that non‐π‐conjugated [NH2SO3] group acts as both hydrogen bond donor and acceptor, effectively regulating the 2D planar structure formed by π‐conjugated [C4N3H6] groups. The resulting organic–inorganic hybrid crystal C4N3H6SO3NH2 exhibits a strong SHG response (2.5 × KDP), large optical anisotropy (0.233@546 nm), and blue‐violet and green fluorescence near 360 and 520 nm, respectively. This work expands the methodology for creating new NLO crystals through organic–inorganic hybridization, while also showcasing the potential of C4N3H6SO3NH2 as a multifunctional optical material.
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- 2024
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24. Controlling factors of high-quality reservoirs in low permeability sandstone: a case study of the upper member of the lower Ganchaigou formation, Qaidam basin
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Wenhuan Li, Dandan Hu, Changli Gong, Tailiang Fan, Yihang Chen, Ya’nan Li, Qi Shi, and Qifeng Leng
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formation mechanism ,high-quality reservoir ,low-permeability sandstone reservoir ,upper member of the lower Ganchaigou formation ,Qaidam basin ,Science - Abstract
The upper member of the Lower Ganchaigou Formation (UMoLGF) is a high-potential hydrocarbon exploration area in the North margin of the Qaidam Basin (NMoQB). It represents a typical low-permeability sandstone reservoir. The current understanding of reservoir characteristics of the UMoLGF is poor, and the main controlling factors of high-quality reservoir development remaining unclear. This study, for the first time, integrated various factors to investigate the formation mechanism of high-quality reservoirs in the UMoLGF’s low-permeability sandstone reservoirs. Results show three provenance systems developed in the study area: northwest, northeast, and east. The northwestern and northeastern areas share similar reservoir characteristics. The rock type is predominantly feldspar, with relatively poor particle sorting and rounding. Pore types are dominated by secondary dissolution pores. However, the northwestern area has more developed fractures and poorer pore structures than the northeastern. Meanwhile, in the eastern area, the rock fragment content was high, the rock type was mainly litharentie and lithic arkose, particles were well-sorted and well-rounded. Residual intergranular pores, with good structures, dominated the pore type. The UMoLGF has entered the eo-diagenesis B stage with minor progression into the meso-diagenesis A stage. Based on quantitive calculations, this study established porosity evolution models for the different study areas. The initial porosities in the northwestern, northeastern, and eastern areas were 30.8%, 30.4%, and 34.8%, respectively. Compaction and cementation are the major factors contributing to porosity reduction in the three areas, with the most significant impact in the northwestern area. Dissolution significantly improved the reservoir properties in the northwestern area, with little effect on the northeastern and eastern areas. The formation of high-quality reservoir in the UMoLGF was affected by provenance, diagenesis, and fractures, with the primary controlling factors varying by area. In the northwestern area, the formation of high-quality reservoirs benefited from strong dissolution and well-developed fractures. In the northeastern area, the high-quality reservoir was relied upon favorable provenance and dissolution. In the eastern area, provenance provided an excellent material basis for developing high-quality reservoirs, with dissolution and chlorite cementation further improving reservoir properties. This study provides a theoretical foundation for further exploration and development of UMoLGF and offers insights for exploring and developing similar low-permeability sandstone reservoirs.
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- 2024
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25. Hepatorenal pathologies in TNF-transgenic mouse model of rheumatoid arthritis are alleviated by anti-TNF treatment
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Xuefei Li, Yi Wang, Ziqiang Chen, Ming Ruan, Can Yang, Maolin Zhou, Ning Li, Lianping Xing, Hao Xu, Ling Yang, Qi Shi, Yongjun Wang, Jinman Chen, and Qianqian Liang
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Rheumatoid arthritis ,Tumor necrosis factor transgenic mouse (TNF-Tg) ,Liver and kidney complications ,Anti-TNF therapy ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Objective To examine and quantify liver and kidney lesions and their response to anti-tumor necrosis factor (TNF) therapy in a TNF-Tg mouse model of rheumatoid arthritis (RA). Methods Female TNF-Tg (Tg3647) mice were used as the animal model for chronic RA. Ultrasound, immunofluorescence, histological staining, serology tests, and real-time RT-PCR were used to examine the pathological changes in the liver and kidney. Results TNF-Tg mice showed a significant decrease in the body weight and a dramatic increase in the volumes of the gallbladder, knee cavity, and popliteal lymph nodes. The liver and kidneys of TNF-Tg mice showed increased chronic inflammation and accumulation of immune cells and fibrosis, compared to wild-type (WT) mice. Moreover, upregulation of inflammatory factors and impaired normal function were observed in the liver and kidneys of TNF-Tg mice. Inflammatory infiltration and fibrosis of the liver and kidneys of female TNF-Tg mice were improved after anti-TNF treatment, and better treatment effects were achieved at 4.5-month-old mice when they were received 8 weeks of intervention. Conclusions We found that TNF drives the development of liver and kidney pathology in female TNF-Tg mice and that there are limitations to the loss of utility of anti-TNF for the prolonged treatment of RA-associated hepatic and renal injury. This study provides a reliable and clinically relevant animal model for further studies exploring the molecular mechanisms and drug discovery for hepatorenal pathologies in RA.
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- 2023
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26. Clinical prediction models of rheumatoid arthritis and its complications: focus on cardiovascular disease and interstitial lung disease
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Yubo Shao, Hong Zhang, Qi Shi, Yongjun Wang, and Qianqian Liang
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Rheumatoid arthritis ,Cardiovascular disease ,Interstitial lung disease ,Prediction models ,Pathogenesis ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Rheumatoid arthritis (RA) is a chronic, systemic, autoimmune disease of unknown etiology with erosive, symmetric polyarthritis as the main clinical manifestations. Its basic pathological changes are the formation of synovitis, and patients gradually develop destruction of articular cartilage destruction and bone erosion, which eventually leads to joint deformity, disability, and various extra-articular manifestations. Clinical prediction models (CPMs), also known as risk prediction models or risk scores, are mathematical formulas used to estimate the probability that a given individual will have a disease or an outcome in the future. The models are mainly divided into two categories: diagnostic models and prognostic models, which can be used to provide information on disease diagnosis or prognosis to help make better medical decisions. Currently, there is no cure for RA, but effective early diagnosis and treatment are crucial for limiting the severity of the disease and preventing the occurrence and development of complications. This paper reviews the CPMs associated with RA and its related complications, including cardiovascular disease (CVD) and interstitial lung disease (ILD), in order to provide reference and evidence for the early diagnosis and treatment of these diseases and personalized medicine for patients. In addition, the possible pathogenesis and risk factors of these comorbidities are summarized, and possible directions for future related research are prospected.
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- 2023
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27. Evolution of the Structure and Morphology of Dual-Linker ZIF-301-eIm
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Ping Wei, Boyao Xie, Jiang Wang, Yanjun Wu, Qi Shi, and Jinxiang Dong
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zeolite imidazolate frameworks ,CHA topology ,acetone and butanol separation ,Organic chemistry ,QD241-441 - Abstract
Few studies have reported on the continuous evolution of dual-linker zeolitic imidazolate frameworks’ (ZIFs) structure and morphology during the crystal growth process. Herein, we report the synthesis of a novel ZIF material with CHA topology (ZIF-301-eIm) via the combination of a small-sized 2-ethylimidazole (eIm) with the large-sized 5-chlorobenzimidazole ligand. A series of derivative materials with distinct structures and morphologies were obtained via two pathways: (1) insufficient amount of eIm with prolonged crystallization time (pathway A) and (2) sufficient amount of eIm with prolonged crystallization time (pathway B). Various characterization techniques revealed the continuous evolution of structure and morphology during the crystal growth process. Insufficient amount of eIm and crystallization time (crystallization pathway A) led to ZIF-301-eIm derivatives with defective and open structures alongside an aggregated morphology of nanoparticles. Prolonging the crystallization time allowed small-sized eIm ligands to gradually fill into the framework, resulting in the formation of ZIF-301-eIm-A5 characterized by complete but dense structures with a perfect polyhedral morphology. Remarkably, a sufficient amount of eIm during synthesis (crystallization pathway B) formed ZIF-301-eIm-B1 with a similar structure and morphology to ZIF-301-eIm-A5 in just 1 day. ZIF-301-eIm-B3, with intact, dense structures, exhibits superior acetone/butanol separation performance compared to ZIF-301-eIm-A3 due to small pore windows and large cages facilitating selective adsorption of acetone through exclusion separation.
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- 2024
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28. Development, sand control mechanism and hydrocarbon accumulation of beach-bar sandstone in a saline lake basin: A case from the Neogene of southwestern Qaidam Basin, NW China
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Yanqing WANG, Zhanguo LIU, Guangyong SONG, Chao ZHU, Senming LI, Yanxiong WU, Zhiyuan XIA, Qi SHI, Shenglong JIA, Zhaobing WANG, and Xuebin WEI
- Subjects
Qaidam Basin ,Neogene ,saline lake basin ,sedimentary characteristics ,beach-bar ,sand control mechanism ,Petroleum refining. Petroleum products ,TP690-692.5 - Abstract
Based on the data of field outcrops, drilling cores, casting thin sections, well logging interpretation, oil/gas shows during drilling, and oil/gas testing results, and combined with modern salt-lake sediments in the Qinghai Lake, the Neogene saline lake beach-bars in southwestern Qaidam Basin are studied from the perspective of sedimentary characteristics, development patterns, sand control factors, and hydrocarbon accumulation characteristics. Beach-bar sand bodies are widely developed in the Neogene saline lake basin, and they are lithologically fine sandstone and siltstone, with wavy bedding, low-angle cross bedding, and lenticular-vein bedding. In view of spatial-temporal distribution, the beach-bar sand bodies are stacked in multiple stages vertically, migratory laterally, and extensive and continuous in NW−SE trending pattern in the plane. The stacking area of the Neogene beach-bar sandstone is predicted to be 3 000 km2. The water salinity affects the sedimentation rate and offshore distance of beach-bar sandstone, and the debris input from the source area affects the scale and enrichment of beach-bar sandstone. The ancient landform controls the morphology and stacking style of beach-bar sandstone, and the northwest monsoon driving effect controls the long-axis extension direction of beach-bar sandstone. The beach-bars have a reservoir-forming feature of “one reservoir in one sand body”, with thick beach-bar sand bodies controlling the effective reservoir distribution and oil-source faults controlling the oil/gas migration and accumulation direction. Three favorable exploration target zones in Zhahaquan, Yingdong−eastern Wunan and Huatugou areas are proposed based on the analysis of reservoir-forming elements.
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- 2023
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29. Unreprogrammed H3K9me3 prevents minor zygotic genome activation and lineage commitment in SCNT embryos
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Ruimin Xu, Qianshu Zhu, Yuyan Zhao, Mo Chen, Lingyue Yang, Shijun Shen, Guang Yang, Zhifei Shi, Xiaolei Zhang, Qi Shi, Xiaochen Kou, Yanhong Zhao, Hong Wang, Cizhong Jiang, Chong Li, Shaorong Gao, and Xiaoyu Liu
- Subjects
Science - Abstract
Abstract Somatic cell nuclear transfer (SCNT) can be used to reprogram differentiated somatic cells to a totipotent state but has poor efficiency in supporting full-term development. H3K9me3 is considered to be an epigenetic barrier to zygotic genomic activation in 2-cell SCNT embryos. However, the mechanism underlying the failure of H3K9me3 reprogramming during SCNT embryo development remains elusive. Here, we perform genome-wide profiling of H3K9me3 in cumulus cell-derived SCNT embryos. We find redundant H3K9me3 marks are closely related to defective minor zygotic genome activation. Moreover, SCNT blastocysts show severely indistinct lineage-specific H3K9me3 deposition. We identify MAX and MCRS1 as potential H3K9me3-related transcription factors and are essential for early embryogenesis. Overexpression of Max and Mcrs1 significantly benefits SCNT embryo development. Notably, MCRS1 partially rescues lineage-specific H3K9me3 allocation, and further improves the efficiency of full-term development. Importantly, our data confirm the conservation of deficient H3K9me3 differentiation in Sertoli cell-derived SCNT embryos, which may be regulated by alternative mechanisms.
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- 2023
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30. Efficacy of five-step shoulder manipulation for rotator cuff-related shoulder pain: protocol for a multicenter randomized controlled trial
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Shuang Liu, Jin-Tao Liu, Lin Chen, Tian-You Fan, Xue-Jun Cui, Shao-Dan Cheng, Yan-Jiao Chen, Qi Shi, Chun-Chun Xue, and Xiao-Feng Li
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Manipulation ,Rotator cuff-related shoulder pain ,Five-step shoulder manipulation ,Exercises ,Randomized controlled trials ,Medicine (General) ,R5-920 - Abstract
Abstract Background Rotator cuff-related shoulder pain (RCRSP) is the most common cause of shoulder disorders. In China, manipulation has been used extensively for the treatment of patients with RCRSP. However, high-quality clinical evidence to support the therapeutic effect of manipulation is still limited. Methods A multicenter, participant-, outcome assessor-, and data analyst-blinded, randomized, placebo-controlled trial will be conducted. A total of 280 participants with RCRSP will be recruited from three hospitals and randomly assigned to a five-step shoulder manipulation (FSM) group or a sham manipulation (SM) group. Each group will receive four weekly treatment sessions, with all participants performing exercises at home for 12 weeks. Assessments, namely the Constant–Murley score, visual analog scale, range of motion, and 36-Item Short Form Survey, will be made at baseline, 4, 12, 18, and 24 weeks. Adverse events during the study will also be recorded. Discussion This is a pragmatic clinical trial to evaluate the efficacy and safety of FSM in patients with RCRSP. The findings of this study will provide worthy clinical evidence for manual therapy for RCRSP. Trial registration China Registered Clinical Trial Registration Center ChiCTR2000037577. Registered on 29 August 2020.
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- 2023
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31. Temperature-Dependent Intensity Modulated Two-Photon Excited Fluorescence Microscopy for High Resolution Mapping of Charge Carrier Dynamics
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Qi Shi, Pushpendra Kumar, and Tönu Pullerits
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Physical and theoretical chemistry ,QD450-801 - Published
- 2023
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32. Influence of powder particle size distribution on microstructure and mechanical properties of 17-4 PH stainless steel fabricated by selective laser melting
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Feng Qin, Qi Shi, Ge Zhou, Xin Liu, Lijia Chen, Wenhao Du, and Dao Yao
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Particle size distribution ,17-4 PH stainless steel ,Heat treatment ,Microstructure ,Mechanical properties ,Powder materials ,Mining engineering. Metallurgy ,TN1-997 - Abstract
This study explores the influence of particle size distribution (PSD) and heat treatment on 17-4 PH stainless steel fabricated by selective laser melting, which greatly improved the elongation of the material on the basis of ensuring the strength. Scanning electron microscope and electron backscattering diffraction were used to characterize the microstructure of 17-4 PH stainless steel. 17-4 PH stainless steel PSD+ and PSD− samples have obtained equiaxed grain, and the internal tissue distribution in PSD+ sample crystals is uneven. By reason of the gas in the large partials of PSD+ powder falling into the size distribution of 49 μm–58.9 μm, it was difficult to escape during the SLM process, which reduced the material density and mechanical properties. Compared with the PSD+ specimens, the tensile strength, hardness and elongation of the PSD− specimens are increase to 345.2 HV, 938.7 MPa, and 22%, respectively. This trend is retained after heat treatment, and the surface hardness, tensile strength and elongation rate of PSD− HT specimens, which are 5.3%, 5.4% and 12.9% higher compared with the PSD+ HT specimens, respectively.
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- 2023
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33. Diagenetic controls over reservoir quality of tight sandstone in the lower Jurassic reservoir in the Lenghu area, the north margin of Qaidam basin
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Wenhuan Li, Dandan Hu, Yuwen Chang, Ya’nan Li, Bin Guo, Qi Shi, and Bin Zhang
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diagenesis ,pore evolution ,reservoir quality ,tight sandstone reservoirs ,Lenghu area ,the north margin of Qaidam basin ,Science - Abstract
The Lower Jurassic Reservoir (LJR) in the Lenghu area on the northern margin of the Qaidam Basin (NMoQB) has become the most promising target for hydrocarbon exploration. The reservoir has experienced complex diagenesis; however, the porosity evolution and the influence of different diagenesis events on reservoir densification remains unclear. In this study, various analytical methods was first used to clarify the diagenetic stage and sequence, establish a porosity evolution model, quantitatively analyze the time and influence of different diagenesis events on reservoir densification, and illustrate the densification mechanism of tight sandstone reservoir in the Lenghu area. The results showed that the dominant rock types in the LJR were feldspathic litharenite, followed by litharenite, lithic arkose, and a small amount of subarkose and sublitharenite. The reservoir is a typical tight sandstone reservoir (TSR), with average porosity and permeability of 5.5% and 0.08 mD, respectively. The pore types were primarily secondary pores, followed by residual intergranular pores and occasional fractures. Diagenesis of LJR has entered the meso-diagenetic stage A, with minor progression into meso-diagenetic stage B. Quantitative calculation showed that the initial porosity of LJR is 32.2%. In eo-diagenetic stage A, compaction is the main factor for porosity reduction. In eo-diagenetic stage B, the porosity loss rates caused by compaction and cementation were 81.5% and 11.8%, respectively. In this stage, the LJR in the Lenghu area has almost been densified, mainly affected by compaction, calcite cementation and clay minerals cementation. Additionally, cementation is an important factor causing reservoir heterogeneity and is dominated by calcite and clay mineral cementation. After entering the meso-diagenetic stage A, dissolution is the main diagenesis event, which can increase porosity by 6.0%. This stage is the critical period for forming high-quality reservoir of LJR in the Lenghu area, mainly in the 4,400 m depth. In meso-diagenetic stage B, the influence of dissolution gradually decreased. Simultaneously, in this stage, the cementation of iron-bearing calcite further strengthened the densification of the LJR in the Lenghu area.
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- 2024
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34. Efficacy and safety of Wuhu oral liquid in treating acute soft tissue injuries: a multicenter, randomized, double-blind, double-dummy, parallel-controlled trial
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Wen-Hao Zhu, Yi Shen, Yu Xiao, Qi Shi, Zhao-Xiang Fan, Yan-Qi Feng, Hong-Bo Wan, Bo Qu, Jun Zhao, Wei-Qiang Zhang, Guo-Hui Xu, Xue-Qun Wu, and De-Zhi Tang
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Chinese medicine ,Wuhu oral liquid ,acute soft tissue injury ,multicenter ,double-blind ,parallel-controlled ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: Wuhu Oral Liquid (WHOL) is a modified preparation derived from the famous Wuhu Powder, which has a long history of use in treating traumatic injuries. This preparation has anti-inflammatory and analgesic properties and accelerates recovery following acute soft tissue injuries.Aims: To evaluate the efficacy and safety of WHOL in treating acute soft tissue injury associated with qi stagnation and blood stasis syndrome and to provide a basis for applying for the protection of varieties of Chinese medicine for WHOL.Methods: This study was a randomized, controlled, double-blind, multicenter clinical trial in which Fufang Shang Tong Capsule (FFSTC) was selected as the control drug. A total of 480 subjects with acute soft tissue injury associated with qi stagnation and blood stasis syndrome were randomly divided into a test and control group in a 3:1 ratio. The duration of drug treatment was 10 days. The primary outcome was Visual Analogue Scale (VAS) score for pain (including pain at rest and pain on activity). Secondary outcomes included the disappearance time of the pain at rest and on activity; the curative effect of TCM syndrome and improvement in the individual symptoms of TCM (swelling, ecchymosis, and dysfunction); and changes in C-reactive protein (CRP) and interleukin-6 (IL-6) levels. Safety was assessed using vital signs, laboratory examinations, electrocardiograms, and physical examinations.Results: Patient compliance was satisfactory in both groups (all between 80% and 120%). After 4 days of treatment, the WHOL group was superior to the FFSTC group in decreasing the VAS scores for pain at rest (−1.88 ± 1.13 vs. −1.60 ± 0.93, p < 0.05) and on activity (−2.16 ± 1.18 vs. −1.80 ± 1.07, p < 0.05). After 7 days of treatment, the WHOL group was superior to the FFSTC group in decreasing the VAS scores for pain on activity (−3.87 ± 1.60 vs. −3.35 ± 1.30, p < 0.01) and improving swelling (cure rate: 60.4% vs. 46.2%, p < 0.05; obvious effective rate: 60.7% vs. 47.0%, p < 0.05). After 10 days of treatment, the WHOL group was superior to the FFSTC group in decreasing the levels of CRP (−0.13 ± 2.85 vs. 0.25 ± 2.09, p < 0.05) and improving the TCM syndrome (cure rate: 44.1% vs. 30.8%, p < 0.05) and swelling (cure rate: 75.6% vs. 67.5%, p < 0.01; obvious effective rate: 75.6% vs. 68.4%, p < 0.05; effective rate: 77.0% vs. 71.8%, p < 0.05). The disappearance time of pain at rest was 8 days in both groups and 9 days on activity in both groups. In addition, there was no statistical difference between the incidence of adverse events (4.5% vs. 2.6%, p > 0.05) and adverse reactions (0.3% vs. 0%, p > 0.05) between the WHOL group and the FFSTC group. No serious adverse events occurred in either group, and no subjects were withdrawn because of adverse events.Conclusion: WHOL relieves the symptoms caused by acute soft tissue injury associated with qi stagnation and blood stasis syndrome more rapidly than FFSTC, and it is effective and safe in the treatment of acute soft tissue injury. Future studies still need a larger sample size to verify its efficacy and safety.Clinical Trial Registration:https://www.chictr.org.cn/showproj.html?proj=149531, Identifier ChiCTR2200056411.
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- 2024
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35. Different reactive profiles of calmodulin in the CSF samples of Chinese patients of four types of genetic prion diseases
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Xiao-Xi Jia, Chao Hu, Cao Chen, Li-Ping Gao, Dong-Lin Liang, Wei Zhou, Run-Dong Cao, Kang Xiao, Qi Shi, and Xiao-Ping Dong
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genetic prion diseases ,cerebrospinal fluid ,calmodulin ,tau ,14-3-3 ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background and purposeCalmodulin (CaM) levels exhibit significant elevation in the brain tissue of rodent and cell line models infected with prion, as well as in the cerebrospinal fluid (CSF) samples from patients diagnosed with sporadic Creutzfeldt-Jakob disease (sCJD). However, the status of CSF CaM in patients with genetic prion diseases (gPrDs) remains unclear. This study aims to assess the characteristics of CSF CaM in Chinese patients presenting four subtypes of gPrDs.MethodsA total of 103 CSF samples from patients diagnosed with T188K-gCJD, E200K-gCJD, D178N-FFI, P102L-GSS were included in this study, along with 40 CSF samples from patients with non-prion diseases (non-PrDs). The presence of CSF CaM and 14-3-3 proteins was assessed using Western blots analysis, while levels of CSF 14-3-3 and total tau were measured using enzyme-linked immunosorbent assays (ELISAs). Statistical methods including multivariate logistic regression were employed to evaluate the association between CSF CaM positivity and relevant clinical, laboratory, and genetic factors.ResultsThe positive rates of CSF CaM were significantly higher in cases of T188K-gCJD (77.1%), E200K-gCJD (86.0%), and P102-GSS (90.9%) compared to non-PrD cases (22.5%). In contrast, CSF CaM positivity was slightly elevated in D178N-FFI (34.3%). CSF CaM positivity was remarkably high in patients who tested positive for CSF 14-3-3 by Western blot and exhibited high levels of total tau (≥1400 pg/ml) as measures by ELISA. Multivariate logistic regression analysis confirmed a significant association between CSF CaM positivity and specific mutations in PRNP, as well as with CSF 14-3-3 positivity. Furthermore, the diagnostic performance of CaM surpassed that of 14-3-3 and tau when analyzing CSF samples from T188K-gCJD and E200K-gCJD patients.ConclusionWestern blot analysis reveals significant variations in the positivity of CSF CaM among the four genotypes of gPrD cases, demonstrating a positive correlation with 14-3-3 positivity and elevated tau levels in CSF.
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- 2024
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36. An Overview of Publications on Extracellular Vesicles in Osteoarthritis from 2012 to 2022: A Bibliometric Analysis
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Rui Wang, Zheng-ming Wang, Si-cheng Xiang, Zhao-kai Jin, Heng-kai Jin, Qi Shi, and Lianbo Xiao
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Medicine - Abstract
Background. Extracellular vesicles, particularly those derived from stem cells, have demonstrated promising potential in osteoarthritis in recent years. However, there has been no bibliometric analysis focusing on the relationship between extracellular vesicles and osteoarthritis. This study aimed to investigate trends and hotpots of publications on extracellular vesicles in osteoarthritis. Methods. This study collected publications on extracellular vesicles in osteoarthritis from the Web of Science Core Collection database, focusing on English-language articles and reviews. Quantitative and visual analysis was performed using Microsoft Excel, R shiny, SCImago Graphica, VOS Viewer, and CiteSpace. The data set comprised information on keywords, authors, institutions, journals, and the country or region of the included literature. Journal impact factors and H-index values were obtained from the 2021 Journal Citation Reports and SJR-International Science Ranking. Furthermore, we conducted a frequency analysis of annual publications number and fitting curves of the growth trends in the publications. Moreover, we conducted a citation burst analysis of the top 20 keywords and a related bibliometric analysis (word frequency analysis and cocitation analysis) using CiteSpace. Results. A total of 715 documents were analyzed. The number of publications increased annually from 2012 to 2022. China had the highest number (n = 394, 55.1%) of publications and total citations during the decade, followed by the United States (n = 105, 14.7%). Shanghai JiaoTong University contributed the highest number of publications (n = 28, 3.9%). Wang Y has the highest number of publications (n = 40, 5.6%), and Stem Cell Research & Therapy is the journal with the highest number of publications (n = 64, 9.0%). The hotspots of extracellular vesicle research in recent years are umbilical cord blood, drug delivery, and scaffolds. Conclusion. Our findings indicate an increase in publications on the topic in utilizing extracellular vesicles in the context of osteoarthritis. Extracellular vesicle therapy for cartilage regeneration and repair of bone defects in osteoarthritis holds significant potential. Future research will focus on the development of novel drug delivery systems that utilize extracellular vesicles, the creation of novel biomaterials that incorporate extracellular vesicles, and the potential of extracellular vesicles as early diagnostic markers of disease.
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- 2024
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37. Does managerial myopia promote enterprises over-financialization? Evidence from listed firms in China.
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Yanchi Chen, Ju Ye, and Qi Shi
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Medicine ,Science - Abstract
This paper analyzes the potential shortsightedness of enterprise managers through annual reports. Additionally, we use corporate financial statement data to measure enterprises over-financialization in terms of resource allocation. After testing with a causal inference model, we find that firms with managerial myopia significantly contribute to over-financialization. It remains robust even after the instrumental variable of whether the manager has experienced a famine is used. Furthermore, financial distress and financing constraints amplify the inclination of short-term-focused managers to amass greater financial assets.
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- 2024
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38. Tumor-draining lymph nodes: opportunities, challenges, and future directions in colorectal cancer immunotherapy
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Tingting Zhu, Yao Wang, Qi Shi, Guanghui Zhu, Siwei Zhu, and Fenggang Hou
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Tumor-draining lymph nodes (TDLNs) are potential immunotherapy targets that could expand the population of patients with colorectal cancer (CRC) who may benefit from immunotherapy. Currently, pathological detection of tumor cell infiltration limits the acquisition of immune information related to the resected lymph nodes. Understanding the immune function and metastatic risk of specific stages of lymph nodes can facilitate better discussions on the removal or preservation of lymph nodes, as well as the timing of immunotherapy. This review summarized the contribution of TDLNs to CRC responses to immune checkpoint blockade therapy, local immunotherapy, adoptive cell therapy, and cancer vaccines, and discussed the significance of these findings for the development of diagnostics based on TDLNs and the potential implications for guiding immunotherapy after a definitive diagnosis. Molecular pathology and immune spectrum diagnosis of TDLNs will promote significant advances in the selection of immunotherapy options and predicting treatment efficacy.
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- 2024
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39. Correlation between the non-use of cooking oil fume extractors and bone mineral density in population aged 45 years and older in China: a cross-sectional study
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Haitao Zhang, Binhao Shi, Chunchun Yuan, Chen Huang, Tingrui Huang, Zhangyu Liao, Wenhao Zhu, Wei Zhong, Hongbin Xu, Jiangxun Ji, Feihong Cai, Yue Chen, Pan Sun, Xianhui Zeng, Zhiwu Yang, Jing Wang, Bing Shu, Qianqian Liang, Qi Shi, Chuanglong Xu, Dezhi Tang, and Yongjun Wang
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bone mineral density ,fume extractors ,cross-sectional study ,correlation ,population ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
IntroductionThe correlation between the non-use of cooking oil fumes (COFs) extractors and bone mineral density (BMD) have not been clarified. Consequently, this study attempted to explore the impact of non-use COFs extractors on BMD in population aged 45 years and older based on a cross-sectional study.MethodsThis study was a cross-sectional study within the framework of an ongoing prospective population-based cohort study in China. The multivariate linear regression models were used to evaluate the correlation between the non-use of fume extractors in family cooking and total lumbar spine (LS), femoral neck (FN), total hip BMD and levels of bone metabolism markers.ResultsA total of 3433 participants were included in the final analyses, of which 2607 (75.93%) participants used fume extractors. The results of models indicated that there were significant correlations of the non-use of fume extractors on total LS BMD (β = -0.024, 95% CI, -0.036, -0.012, p < 0.001), PINP (β = 4.363, 95% CI, 2.371, 6.356, p < 0.001) and ALP (β = 4.555, 95% CI, 2.593, 6.517, p < 0.001) levels.ConclusionsThis study verified that the use of fume extractors is an efficacious measure to prevent LS bone loss. For the sake of public bone health, people should install a fume extractor in the kitchen and use it routinely when cooking.
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- 2024
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40. The effect of childbirth trauma on willingness to donate milk in women following perinatal loss: The mediating role of resilience
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Fengling Li, Qi Shi, Tao Xiong, Yang Li, Yuxi Zheng, Guolu Jiang, Diana S. Duan, Xuemei Wei, Lijun Cui, and Zhaoxia Chen
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bereavement ,childbirth trauma ,mediating effect ,milk donation ,perinatal loss ,resilience ,Pediatrics ,RJ1-570 ,Gynecology and obstetrics ,RG1-991 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Limited studies have been conducted on Chinese women's willingness to donate milk following perinatal loss. In this study, we explore the relationship among childbirth trauma, willingness to donate milk, and resilience in women following perinatal loss, and the mediating effect of resilience between childbirth trauma and willingness to donate milk. A cross‐sectional study was carried out throughout 4 months. We used convenience sampling methods and recruited 241 women following a perinatal loss from eight tertiary hospitals in Sichuan Province, China. Participants completed four questionnaires during a face‐to‐face individual interview: the general information questionnaire, the Willingness to Donate Milk Scale (WMDS), the City Birth Trauma Scale, and the Brief Resilience Scale. SPSS 20.0 was used to analyze the collected data. In our study, childbirth trauma was negatively correlated with the total and each dimension score of WMDS (p
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- 2024
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41. Prediction model for labour dystocia occurring in the active phase
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Yanqing Liu, Qingquan Gong, Yuhong Yuan, and Qi Shi
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primipara ,risk factors ,active phase ,labour dystocia ,prediction model ,nomogram ,Gynecology and obstetrics ,RG1-991 - Abstract
To establish and verify a model for labour dystocia occurring in the active phase, this study retrospectively analysed the clinical data of primiparas with singleton cephalic full-term foetuses, who had delivered after a trial of labour. The Chi-square test, t-test, Mann–Whitney U test and multivariate logistic regression analysis were used for statistical analysis. Based on the model a nomogram was established using the R programming language. Multivariate logistic regression analysis showed that the foetal abdominal circumference, premature rupture of membranes (PROM), prolonged latent phase, foetal station and foetal position at the early stage of the active phase were independent factors influencing labour dystocia occurring in the active phase. The established model could effectively and accurately support clinicians in the early identification of labour dystocia to improve maternal and infant outcomes.Impact statement What is already known on this subject? Labour dystocia occurring during the active phase of the first stage, is the most commonly diagnosed as labour aberration. Previous studies have suggested that maternal age, body mass index, macrosomia and abnormal foetal position are the independent risk factors for labour dystocia. However, only the risk factors were reported, and few prediction models were established. What do the results of this study add? This study uses data in the real world to establish a prediction model of full-term singleton primipara with labour dystocia occurring in the active phase by logistic regression analysis. Foetal abdomen circumference, PROM, prolonged latent phase, the foetal station and foetal position at the early stage of the active phase are independent factors influencing labour dystocia that occurs in the active phase. In addition, a nomogram is established as a visual graph to predict the probability of it. What are the implications of these findings for clinical practice and/or further research? The nomogram based on the predictive model discarded complicated calculations and presented an easy visual graph-based method to predict the probability of labour dystocia occurring in the active phase. It helps to introduce interventions that could reduce the CS rate and occurrence of adverse maternal and foetal outcomes to ensure the safety of mothers and infants.
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- 2023
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42. Horizontal inequity trends of health care utilization in rural China after the medicine and healthcare system reform: based on longitudinal data from 2010 to 2018
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Jinpeng Xu, Guomei Tian, Jiale Sun, Jian Liu, Fangting Chen, Qi Shi, Ting Zhang, Hongyu Zhang, Jingran He, Fangmin Deng, Bokai Zhang, Haixin Wang, Qunhong Wu, and Zheng Kang
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Health care utilization ,Concentration index ,Horizontal inequity ,Rural China ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background To assess the effectiveness of China's medicine and health care reform in promoting equity in health care utilization among rural residents, it is necessary to analyze temporal trends in equity in health care utilization among rural residents in China. This study is the first to assess horizontal inequity trends in health care utilization among rural Chinese residents from 2010 to 2018 and provides evidence for improving government health policies. Methods Longitudinal data obtained from China Family Panel Studies from 2010 to 2018 were used to determine trends in outpatient and inpatient utilization. Concentration index, concentration curve, and horizontal inequity index were calculated to measure inequalities. Decomposition analysis was applied to measure the contribution of need and non-need factors to the unfairness. Results From 2010 to 2018, outpatient utilization among rural residents increased by 35.10%, while inpatient utilization increased by 80.68%. Concentration indices for health care utilization were negative in all years. In 2012, there was an increase in the concentration index for outpatient utilization (CI = -0.0219). The concentration index for inpatient utilization decreased from -0.0478 in 2010 to -0.0888 in 2018. Except for outpatient utilization in 2012 (HI = 0.0214), horizontal inequity indices for outpatient utilization were negative in all years. The horizontal inequity index for inpatient utilization was highest in 2010 (HI = -0.0068) and lowest in 2018 (HI = -0.0303). The contribution of need factors to the inequity exceeded 50% in all years. Conclusions Between 2010 and 2018, low-income groups in rural China used more health services. This seemingly pro-poor income-related inequality was due in large part to the greater health care need among low-income groups. Government policies aimed at increasing access to health services, particularly primary health care had helped to make health care utilization in rural China more equitable. It is necessary to design better health policies for disadvantaged groups to reduce future inequities in the use of health services by rural populations.
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- 2023
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43. Proteomics profiling for the global and acetylated proteins of papillary thyroid cancers
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Wei Wei, Yuezhang Wu, Dong-Dong Chen, Yuntao Song, Guohui Xu, Qi Shi, and Xiao-Ping Dong
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Papillary thyroid cancer ,Proteomics ,Acetylated proteins ,TMT labeling ,KEGG ,Cytology ,QH573-671 - Abstract
Abstract Background Papillary thyroid carcinoma (PTC) is the most common endocrine malignancy cancer among the malignancies of thyroid. Despite of wide usages of proteomics in PTC, the profile of acetylated proteins in PTC remains unsettled, which is helpful for understanding the carcinogenesis mechanism and identifying useful biomarkers for PTC. Methods The surgically removed specimens of cancer tissues (Ca-T) and adjacent normal tissues (Ca-N) from 10 female patients pathological diagnosed as PTC (TNM stage III) were enrolled in the study. After preparing the pooled extracts of the whole proteins and the acetylated proteins from 10 cases, TMT labeling and LC/MS/MS methods were applied to the assays of global proteomics and acetylated proteomics separately. Bioinformatics analysis, including KEGG, gene ontology (GO) and hierarchical clustering were performed. Some differentially expressed proteins (DEPs) and differentially expressed acetylated proteins (DEAPs) were validated by individual Western blots. Results Controlled with the normal tissues adjacent to the lesions, 147 out of 1923 identified proteins in tumor tissues were considered as DEPs in global proteomics, including 78 up-regulated and 69 down-regulated ones, while 57 out of 311 identified acetylated proteins in tumor tissues were DEAPs in acetylated proteomics, including 32 up-regulated and 25 down-regulated, respectively. The top 3 up- and down-regulated DEPs were fibronectin 1, KRT1B protein and chitinase-3-like protein 1, as well as keratin, type I cytoskeletal 16, A-gamma globin Osilo variant and Huntingtin interacting protein-1. The top 3 up- and down-regulated DEAPs were ribosomal protein L18a-like protein, alpha-1-acid glycoprotein 2 and eukaryotic peptide chain release factor GTP-binding subunit ERF3A, as well as trefoil factor 3, thyroglobulin and histone H2B. Functional GO annotation and KEGG pathway analysis based on the DEPs and DEAPs showed completely different changing pictures. Contrary to the top 10 up- and -down regulated DEPs, most of which were addressed in PTC and other types of carcinomas, changes of the majority DEAPs were not mentioned in the literatures. Conclusions Taken the profiling of the global and acetylated proteomics together will provide more broad view of protein alterations on the carcinogenesis and new direction for selecting biomarker for diagnosis of PTC.
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- 2023
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44. Potential role of LPAR5 gene in prognosis and immunity of thyroid papillary carcinoma and pan-cancer
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Ben Zhang, Lixi Zhang, Peng Qi, Renzhu Pang, Ziming Wang, Xuyao Liu, Qi Shi, and Qiang Zhang
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Medicine ,Science - Abstract
Abstract Papillary carcinomas account for the largest proportion of thyroid cancers, with papillary thyroid carcinoma (PTC) being prone to early lymph node metastasis. Some studies have confirmed that LPAR5 can promote the progression of PTC, but immune-related analyses of LPAR5 and PTC have not been widely discussed. This study aimed to determine the role of LPAR5 in PTC prognosis and immunity. We will further explore the role of LPAR5 in 33 different tumor types. Regarding PTC, we analyzed the effect of LPAR5 expression on overall survival (OS). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed. Immune-related analyses of immune checkpoints (ICPs) and immune cell infiltration were also performed. For pan-cancer, R packages were used to analyze prognosis, tumor mutational burden (TMB), microsatellite instability (MSI), and immune cell infiltration. Analysis of tumor microenvironment (TME) and ICPs was performed using Sangerbox ( http://vip.sangerbox.com/home.html ). The TISIDB database ( http://cis.hku.hk/TISIDB/index.php ) was used to identify immune and molecular subtypes. LPAR5 expression is associated with PTC prognosis and immunity as well as various human tumors. LPAR5 may be a potential biomarker for multiple malignancies and may provide a new target for cancer immunotherapy.
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- 2023
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45. Chlorine Dioxide Reprograms Rhizosphere Microbial Communities to Enrich Interactions with Tobacco (Nicotiana tabacum)
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QI SHI, ZHANG JILI, LUAN XINBO, LI JUNLIN, HE ZIKANG, LONG JUNRU, XU MENGYUN, LI PING, CHEN ZEPENG, WEI JIANYU, and YAN JIAN
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chlorine dioxide ,soil disinfection ,rhizosphere microbiome ,plant-microbe interactions ,nicotiana tabacum ,Genetics ,QH426-470 ,Microbiology ,QR1-502 - Abstract
For decades chlorine dioxide has been used in water disinfection with excellent results. As the scope of application expands, chlorine dioxide has the potential for soil disinfection. We used amplicon sequencing and gas chromatography-mass spectrometry to compare the changes of four mixed rhizosphere microbial community samples and 12 tobacco leaf volatile samples four months after the flood irrigation with chlorine dioxide in different concentrations (0, 2, 4, 8 mg/l). Phenotypic data of 60 tobacco plants were also collected. The effects of chlorine dioxide on rhizosphere microorganisms were positively correlated with dose gradients. Bacteria responded more strongly in both community structure and metabolic pathways than fungi. Five new bacterial phyla (Firmicutes, Bacteroidota, Myxococcota, Patescibacteria, Verrucomicroboata) appeared in chlorine dioxide treatment groups, while the fungal community only appeared as one new fungal phylum (Basidomycota). Alterations in 271 predicted metabolic bacterial pathways were found. However, in the fungal community were only 10 alternations. The correlations between leaf volatile compounds and rhizosphere microorganisms under the influence of chlorine dioxide treatment could be observed based on network results. However, natural connectivity had already been declining rapidly when less than 20% of the network’s nodes were removed. Therefore, the microbe-metabolite network is not stable. It might be why chlorine dioxide treatments did not significantly affect tobacco quality (p = 0.754) and phenotype (p = 0.867). As a comprehensive investigation of chlorine dioxide in agriculture, this study proves the effectiveness and safety of chlorine dioxide soil disinfection and widens the application range of chlorine dioxide.
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- 2023
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46. Topological properties and connectivity patterns in brain networks of patients with refractory epilepsy combined with intracranial electrical stimulation
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Yulei Sun, Qi Shi, Min Ye, and Ailiang Miao
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refractory epilepsy ,functional magnetic resonance imaging ,intracranial electrical stimulation ,network connectivity patterns ,small-world property ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
ObjectiveAlthough intracranial electrical stimulation has emerged as a treatment option for various diseases, its impact on the properties of brain networks remains challenging due to its invasive nature. The combination of intracranial electrical stimulation and whole-brain functional magnetic resonance imaging (fMRI) in patients with refractory epilepsy (RE) makes it possible to study the network properties associated with electrical stimulation. Thus, our study aimed to investigate the brain network characteristics of RE patients with concurrent electrical stimulation and obtain possible clinical biomarkers.MethodsOur study used the GRETNA toolbox, a graph theoretical network analysis toolbox for imaging connectomics, to calculate and analyze the network topological attributes including global measures (small-world parameters and network efficiency) and nodal characteristics. The resting-state fMRI (rs-fMRI) and the fMRI concurrent electrical stimulation (es-fMRI) of RE patients were utilized to make group comparisons with healthy controls to identify the differences in network topology properties. Network properties comparisons before and after electrode implantation in the same patient were used to further analyze stimulus-related changes in network properties. Modular analysis was used to examine connectivity and distribution characteristics in the brain networks of all participants in study.ResultsCompared to healthy controls, the rs-fMRI and the es-fMRI of RE patients exhibited impaired small-world property and reduced network efficiency. Nodal properties, such as nodal clustering coefficient (NCp), betweenness centrality (Bc), and degree centrality (Dc), exhibited differences between RE patients (including rs-fMRI and es-fMRI) and healthy controls. The network connectivity of RE patients (including rs-fMRI and es-fMRI) showed reduced intra-modular connections in subcortical areas and the occipital lobe, as well as decreased inter-modular connections between frontal and subcortical regions, and parieto-occipital regions compared to healthy controls. The brain networks of es-fMRI showed a relatively weaker small-world structure compared to rs-fMRI.ConclusionThe brain networks of RE patients exhibited a reduced small-world property, with a tendency toward random networks. The network connectivity patterns in RE patients exhibited reduced connections between cortical and subcortical regions and enhanced connections among parieto-occipital regions. Electrical stimulation can modulate brain network activity, leading to changes in network connectivity patterns and properties.
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- 2023
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47. Aconine attenuates osteoclast-mediated bone resorption and ferroptosis to improve osteoporosis via inhibiting NF-κB signaling
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Chunchun Xue, Huan Luo, Libo Wang, Qing Deng, Wenyun Kui, Weiwei Da, Lin Chen, Shuang Liu, Yongpeng Xue, Jiafan Yang, Lingxing Li, Wenlan Du, Qi Shi, and Xiaofeng Li
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aconine ,osteoporosis ,osteoclast ,ferroptosis ,NF-κB signaling ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Osteoporosis (OP), a prevalent public health concern primarily caused by osteoclast-induced bone resorption, requires potential therapeutic interventions. Natural compounds show potential as therapeutics for postmenopausal OP. Emerging evidence from in vitro osteoclastogenesis assay suggests that aconine (AC) serves as an osteoclast differentiation regulator without causing cytotoxicity. However, the in vivo functions of AC in various OP models need clarification. To address this, we administered intraperitoneal injections of AC to ovariectomy (OVX)-induced OP mice for 8 weeks and found that AC effectively reversed the OP phenotype of OVX mice, leading to a reduction in vertebral bone loss and restoration of high bone turnover markers. Specifically, AC significantly suppressed osteoclastogenesis in vivo and in vitro by decreasing the expression of osteoclast-specific genes such as NFATc1, c-Fos, Cathepsin K, and Mmp9. Importantly, AC can regulate osteoclast ferroptosis by suppressing Gpx4 and upregulating Acsl4, which is achieved through inhibition of the phosphorylation of I-κB and p65 in the NF-κB signaling pathway. These findings suggest that AC is a potential therapeutic option for managing OP by suppressing NF-κB signaling-mediated osteoclast ferroptosis and formation.
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- 2023
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48. Primary lipoblastic nerve sheath tumor in an inguinal lymph node mimicking metastatic tumor: a case report and literature review
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Chengxin Chen, Jiachen Cao, Lingxie Song, Wenjie Wang, Dandan Guo, Qi Shi, Ying Zhang, Yunzhao Chen, Chunxia Liu, and Feng Li
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lipoblastic nerve sheath tumor ,lipoblast-like cells ,nuclear atypia ,lymph node ,case report ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Lipoblastic nerve sheath tumors of soft tissue are characterized as schwannoma tumors that exhibit adipose tissue and lipoblast-like cells with signet-ring morphology. They have been documented to arise in various anatomic locations, including the thigh, groin, shoulder, and retroperitoneum. However, to our knowledge, this tumor has not been previously reported as a lymph node primary. We present herein the first case of a benign primary lipoblastic nerve sheath tumor arising in an inguinal lymph node in a 69-year-old man. Microscopic examination revealed a multinodular tumor comprising fascicles of spindle cells, as well as adipocytic and lipoblast-like signet-ring cell component in the context of schwannoma. Despite the presence of some bizarre cells with nuclear atypia, no obvious mitotic activity or necrosis was observed. Immunohistochemical analysis showed strong and diffuse expression of S-100, SOX10, CD56, and NSE in the spindle cells as well as in the signet-ring lipoblast-like cells and the mature adipocytes. Sequencing analysis of the neoplasm identified six non-synonymous single nucleotide variant genes, specifically NF1, BRAF, ECE1, AMPD3, CRYAB, and NPHS1, as well as four nonsense mutation genes including MRE11A, CEP290, OTOA, and ALOXE3. The patient remained alive and well with no evidence of recurrence over a period of ten-year follow-up.
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- 2023
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49. Intratibial osteosarcoma growth and pulmonary metastasis inhibition by HIPPO signaling pathway-induced photodynamic therapy
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Wenyi Wang, Junli Chang, Hongfeng Ruan, Xingyuan Sun, Fulai Zhao, Peng Zhao, Chujie Zhou, Junjie Tong, Suxia Guo, Qi Shi, Yongjun Wang, Weian Zhang, and Yanping Yang
- Subjects
Photodynamic therapy ,HIPPO signaling pathway ,Osteosarcoma ,Intratibia osteosarcoma ,Pulmonary metastasis ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Cancer is a global leading cause of death, with nearly 10 million people dying from cancer in 2020. Photodynamic therapy (PDT) has emerged as a promising cancer treatment modality; however, the potential molecular mechanisms remain obscure. Herein, we designed a near-infrared (NIR) light-activated nanoplatform (TPBC-PEG) to explore the therapeutic effects and mechanisms of PDT by using a model of intratibial primary and pulmonary metastasis osteosarcoma. Under laser irradiation, TPBC-PEG photosensitizer dose-dependently inhibited proliferative and metastatic capabilities while promoting apoptosis of osteosarcoma cells in vitro, and also effectively suppressed carcinogenesis and pulmonary metastasis in osteosarcoma xenograft mouse model. Moreover, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis after high-throughput mRNA-seq indicated that the HIPPO signaling pathway was one of the 20 most significantly related signaling pathways. And a series of experiments for determining the HIPPO signaling activity were conducted to reconfirm the specificity. Collectively, PDT of TPBC-PEG micelles against carcinogenesis and pulmonary metastasis of deep-seated intratibial osteosarcoma was achieved by activating HIPPO signaling pathway. Our study identified a hitherto uncharacterized molecular mechanism of PDT, which may provide new insights to understand and design promising nanoplatforms for future cancer therapies.
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- 2023
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50. A Trust-Based Cooperative System for Efficient Wi-Fi Radio Access Networks
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Alessandro Raschella, Max Hashem Eiza, Michael Mackay, Qi Shi, and Matthew Banton
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Access point association ,blockchain ,radio access network (RAN) ,smart contract ,software-defined wireless network (SDWN) ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
This paper proposes a novel trust-based cooperative system to facilitate efficient Wi-Fi network access trading to solve the network congestion problem in a beneficial manner for both service providers and customers. The proposed system enables service providers to improve their users’ application performance through a novel cooperative Access Point (AP) association solution. The system is based on a Software-Defined Wireless Network (SDWN) controller, which has a global view of users’ devices, requirements, and APs. The SDWN controller is supported by Smart Contracts (SCs) as code of law, to liaise control among service providers according to the terms of their mutual agreements. Evaluation results in dense Wi-Fi network environments show how the system can significantly improve the overall performance for the cooperating network. Specifically, the results have been compared against the standard AP association approach and other centralised algorithms dealing with the same problem, in terms of the data bit rate provided to the users’ stations (STAs), Quality of Experience (QoE), bandwidth and energy consumed by the APs.
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- 2023
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