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Multi-view representation learning (MvRL) has garnered substantial attention in recent years, driven by the increasing demand for applications that can effectively process and analyze data from multiple sources. In this context, graph Laplacian-based MvRL methods have demonstrated remarkable success in representing multi-view data. However, these methods often struggle with generalization to new data and face challenges with scalability. Moreover, in many practical scenarios, multi-view data is contaminated by noise or outliers. In such cases, modern deep-learning-based MvRL approaches that rely on alignment or contrastive objectives can lead to misleading results, as they may impose incorrect consistency between clear and corrupted data sources. We introduce $\textit{SpecRaGE}$, a novel fusion-based framework that integrates the strengths of graph Laplacian methods with the power of deep learning to overcome these challenges. SpecRage uses neural networks to learn parametric mapping that approximates a joint diagonalization of graph Laplacians. This solution bypasses the need for alignment while enabling generalizable and scalable learning of informative and meaningful representations. Moreover, it incorporates a meta-learning fusion module that dynamically adapts to data quality, ensuring robustness against outliers and noisy views. Our extensive experiments demonstrate that SpecRaGE outperforms state-of-the-art methods, particularly in scenarios with data contamination, paving the way for more reliable and efficient multi-view learning. Our code will be made publicly available upon acceptance.

Effective spatio-temporal measurements of water surface elevation (water waves) in laboratory experiments are essential for scientific and engineering research. Existing techniques are often cumbersome, computationally heavy and generally suffer from limited wavenumber/frequency response. To address these challenges a novel method was developed, using polarization filter equipped camera as the main sensor and Machine Learning (ML) algorithms for data processing [1,2]. The developed method training and evaluation was based on in-house made supervised dataset. Here we present this supervised dataset of polarimetric images of the water surface coupled with the water surface elevation measurements made by a linear array of resistance-type wave gauges (WG). The water waves were mechanically generated in a laboratory waves basin, and the polarimetric images were captured under an artificial light source. Meticulous camera and WGs calibration and instruments synchronization supported high spatio-temporal resolution. The data set covers several wavefield conditions, from simple monochromatic wave trains of various steepness, to irregular wavefield of JONSWAP prescribed spectral shape and several wave breaking scenarios. The dataset contains measurements repeated in several camera positions relative to the wave field propagation direction., Comment: 15 pages, 7 figures, 3 tables. Data article. Under review in "Data in Brief" journal. The data in available for download on ScienceDB repository. arXiv admin note: substantial text overlap with arXiv:2410.14988

Large Language Models (LLMs) have shown promise in highly-specialized domains, however challenges are still present in aspects of accuracy and costs. These limitations restrict the usage of existing models in domain-specific tasks. While fine-tuning pre-trained models have shown promising results, this process can be computationally expensive and require massive datasets of the specialized application in hand. In this work, we bridge that gap. We have developed Phi-2-Legal and Mistral-Legal-7B, which are language models specifically designed for legal applications. These models are based on Phi-2 and Mistral-7B-v0.1, and have gone through continued pre-training with over 500 million tokens of legal texts. Our innovative approach significantly improves capabilities in legal tasks by using Large Language Models (LLMs) to convert raw training data into reading comprehension text. Our legal LLMs have demonstrated superior performance in legal benchmarks, even outperforming models trained on much larger datasets with more resources. This work emphasizes the effectiveness of continued pre-training on domain-specific texts, while using affordable LLMs for data conversion, which gives these models domain expertise while retaining general language understanding capabilities. While this work uses the legal domain as a test case, our method can be scaled and applied to any pre-training dataset, resulting in significant improvements across different tasks. These findings underscore the potential of domain-adaptive pre-training and reading comprehension for the development of highly effective domain-specific language models.

Training and fine-tuning large language models (LLMs) come with challenges related to memory and computational requirements due to the increasing size of the model weights and the optimizer states. Various techniques have been developed to tackle these challenges, such as low-rank adaptation (LoRA), which involves introducing a parallel trainable low-rank matrix to the fixed pre-trained weights at each layer. However, these methods often fall short compared to the full-rank weight training approach, as they restrict the parameter search to a low-rank subspace. This limitation can disrupt training dynamics and require a full-rank warm start to mitigate the impact. In this paper, we introduce a new method inspired by a phenomenon we formally prove: as training progresses, the rank of the estimated layer gradients gradually decreases, and asymptotically approaches rank one. Leveraging this, our approach involves adaptively reducing the rank of the gradients during Adam optimization steps, using an efficient online-updating low-rank projections rule. We further present a randomized SVD scheme for efficiently finding the projection matrix. Our technique enables full-parameter fine-tuning with adaptive low-rank gradient updates, significantly reducing overall memory requirements during training compared to state-of-the-art methods while improving model performance in both pretraining and fine-tuning. Finally, we provide a convergence analysis of our method and demonstrate its merits for training and fine-tuning language and biological foundation models.

Effective spatio-temporal measurements of water surface elevation (water waves) in laboratory experiments are crucial for scientific and engineering research. Existing techniques are often cumbersome, computationally heavy and generally suffer from limitations in wavenumber/frequency response. To address these challenges, we propose Wave (from) Polarized Light Learning (WPLL), a learning based remote sensing method for laboratory implementation, capable of inferring surface elevation and slope maps in high resolution. The method uses the polarization properties of light reflected from the water surface. The WPLL uses a deep neural network (DNN) model that approximates the water surface slopes from the polarized light intensities. Once trained on simple monochromatic wave trains, the WPLL is capable of producing high-resolution and accurate 2D reconstruction of the water surface slopes and elevation in a variety of irregular wave fields. The method's robustness is demonstrated by showcasing its high wavenumber/frequency response, its ability to reconstruct wave fields propagating at arbitrary angles relative to the camera optical axis, and its computational efficiency. This developed methodology is an accurate and cost-effective near-real time remote sensing tool for laboratory water surface waves measurements, setting the path for upscaling to open sea application for research, monitoring, and short-time forecasting., Comment: 20 pages, 17 figures, 5 tables, under review in Applied Ocean Research Journal

Choosing a meaningful subset of features from high-dimensional observations in unsupervised settings can greatly enhance the accuracy of downstream analysis, such as clustering or dimensionality reduction, and provide valuable insights into the sources of heterogeneity in a given dataset. In this paper, we propose a self-supervised graph-based approach for unsupervised feature selection. Our method's core involves computing robust pseudo-labels by applying simple processing steps to the graph Laplacian's eigenvectors. The subset of eigenvectors used for computing pseudo-labels is chosen based on a model stability criterion. We then measure the importance of each feature by training a surrogate model to predict the pseudo-labels from the observations. Our approach is shown to be robust to challenging scenarios, such as the presence of outliers and complex substructures. We demonstrate the effectiveness of our method through experiments on real-world datasets, showing its robustness across multiple domains, particularly its effectiveness on biological datasets., Comment: 20 pages, 5 figures

The phenomenon of double descent has recently gained attention in supervised learning. It challenges the conventional wisdom of the bias-variance trade-off by showcasing a surprising behavior. As the complexity of the model increases, the test error initially decreases until reaching a certain point where the model starts to overfit the train set, causing the test error to rise. However, deviating from classical theory, the error exhibits another decline when exceeding a certain degree of over-parameterization. We study the presence of double descent in unsupervised learning, an area that has received little attention and is not yet fully understood. We conduct extensive experiments using under-complete auto-encoders (AEs) for various applications, such as dealing with noisy data, domain shifts, and anomalies. We use synthetic and real data and identify model-wise, epoch-wise, and sample-wise double descent for all the aforementioned applications. Finally, we assessed the usability of the AEs for detecting anomalies and mitigating the domain shift between datasets. Our findings indicate that over-parameterized models can improve performance not only in terms of reconstruction, but also in enhancing capabilities for the downstream task.

Large Language Models (LLMs) can become outdated over time as they may lack updated world knowledge, leading to factual knowledge errors and gaps. Knowledge Editing (KE) aims to overcome this challenge using weight updates that do not require expensive retraining. We propose treating KE as an LLM alignment problem. Toward this goal, we introduce Knowledge Direct Preference Optimization (KDPO), a variation of the Direct Preference Optimization (DPO) that is more effective for knowledge modifications. Our method is based on an online approach that continually updates the knowledge stored in the model. We use the current knowledge as a negative sample and the new knowledge we want to introduce as a positive sample in a process called DPO. We also use teacher-forcing for negative sample generation and optimize using the positive sample, which helps maintain localized changes. We tested our KE method on various datasets and models, comparing it to several cutting-edge methods, with 100 and 500 sequential edits. Additionally, we conducted an ablation study comparing our method to the standard DPO approach. Our experimental results show that our modified DPO method allows for more refined KE, achieving similar or better performance compared to previous methods., Comment: 9 pages, 4 figures

With the increasing prevalence of voice-activated devices and applications, keyword spotting (KWS) models enable users to interact with technology hands-free, enhancing convenience and accessibility in various contexts. Deploying KWS models on edge devices, such as smartphones and embedded systems, offers significant benefits for real-time applications, privacy, and bandwidth efficiency. However, these devices often possess limited computational power and memory. This necessitates optimizing neural network models for efficiency without significantly compromising their accuracy. To address these challenges, we propose a novel keyword-spotting model based on sparse input representation followed by a linear classifier. The model is four times faster than the previous state-of-the-art edge device-compatible model with better accuracy. We show that our method is also more robust in noisy environments while being fast. Our code is available at: https://github.com/jsvir/sparknet.

Standard convolutions are prevalent in image processing and deep learning, but their fixed kernel design limits adaptability. Several deformation strategies of the reference kernel grid have been proposed. Yet, they lack a unified theoretical framework. By returning to a metric perspective for images, now seen as two-dimensional manifolds equipped with notions of local and geodesic distances, either symmetric (Riemannian metrics) or not (Finsler metrics), we provide a unifying principle: the kernel positions are samples of unit balls of implicit metrics. With this new perspective, we also propose metric convolutions, a novel approach that samples unit balls from explicit signal-dependent metrics, providing interpretable operators with geometric regularisation. This framework, compatible with gradient-based optimisation, can directly replace existing convolutions applied to either input images or deep features of neural networks. Metric convolutions typically require fewer parameters and provide better generalisation. Our approach shows competitive performance in standard denoising and classification tasks.

Modern cameras typically offer two types of image states: a minimally processed linear raw RGB image representing the raw sensor data, and a highly-processed non-linear image state, such as the sRGB state. The CIE-XYZ color space is a device-independent linear space used as part of the camera pipeline and can be helpful for computer vision tasks, such as image deblurring, dehazing, and color recognition tasks in medical applications, where color accuracy is important. However, images are usually saved in non-linear states, and achieving CIE-XYZ color images using conventional methods is not always possible. To tackle this issue, classical methodologies have been developed that focus on reversing the acquisition pipeline. More recently, supervised learning has been employed, using paired CIE-XYZ and sRGB representations of identical images. However, obtaining a large-scale dataset of CIE-XYZ and sRGB pairs can be challenging. To overcome this limitation and mitigate the reliance on large amounts of paired data, self-supervised learning (SSL) can be utilized as a substitute for relying solely on paired data. This paper proposes a framework for using SSL methods alongside paired data to reconstruct CIE-XYZ images and re-render sRGB images, outperforming existing approaches. The proposed framework is applied to the sRGB2XYZ dataset., Comment: 10 pages, 4 figures, WSCG 2024 conference

Large-scale text-to-image models that can generate high-quality and diverse images based on textual prompts have shown remarkable success. These models aim ultimately to create complex scenes, and addressing the challenge of multi-subject generation is a critical step towards this goal. However, the existing state-of-the-art diffusion models face difficulty when generating images that involve multiple subjects. When presented with a prompt containing more than one subject, these models may omit some subjects or merge them together. To address this challenge, we propose a novel approach based on a guiding principle. We allow the diffusion model to initially propose a layout, and then we rearrange the layout grid. This is achieved by enforcing cross-attention maps (XAMs) to adhere to proposed masks and by migrating pixels from latent maps to new locations determined by us. We introduce new loss terms aimed at reducing XAM entropy for clearer spatial definition of subjects, reduce the overlap between XAMs, and ensure that XAMs align with their respective masks. We contrast our approach with several alternative methods and show that it more faithfully captures the desired concepts across a variety of text prompts.

Fusing information from different modalities can enhance data analysis tasks, including clustering. However, existing multi-view clustering (MVC) solutions are limited to specific domains or rely on a suboptimal and computationally demanding two-stage procedure of representation and clustering. We propose an end-to-end deep learning-based MVC framework for general data (image, tabular, etc.). Our approach involves learning meaningful fused data representations with a novel permutation-based canonical correlation objective. Concurrently, we learn cluster assignments by identifying consistent pseudo-labels across multiple views. We demonstrate the effectiveness of our model using ten MVC benchmark datasets. Theoretically, we show that our model approximates the supervised linear discrimination analysis (LDA) representation. Additionally, we provide an error bound induced by false-pseudo label annotations.

Feature selection is a crucial tool in machine learning and is widely applied across various scientific disciplines. Traditional supervised methods generally identify a universal set of informative features for the entire population. However, feature relevance often varies with context, while the context itself may not directly affect the outcome variable. Here, we propose a novel architecture for contextual feature selection where the subset of selected features is conditioned on the value of context variables. Our new approach, Conditional Stochastic Gates (c-STG), models the importance of features using conditional Bernoulli variables whose parameters are predicted based on contextual variables. We introduce a hypernetwork that maps context variables to feature selection parameters to learn the context-dependent gates along with a prediction model. We further present a theoretical analysis of our model, indicating that it can improve performance and flexibility over population-level methods in complex feature selection settings. Finally, we conduct an extensive benchmark using simulated and real-world datasets across multiple domains demonstrating that c-STG can lead to improved feature selection capabilities while enhancing prediction accuracy and interpretability., Comment: Accepted to ICML 2024

We study the problem of performing face verification with an efficient neural model $f$. The efficiency of $f$ stems from simplifying the face verification problem from an embedding nearest neighbor search into a binary problem; each user has its own neural network $f$. To allow information sharing between different individuals in the training set, we do not train $f$ directly but instead generate the model weights using a hypernetwork $h$. This leads to the generation of a compact personalized model for face identification that can be deployed on edge devices. Key to the method's success is a novel way of generating hard negatives and carefully scheduling the training objectives. Our model leads to a substantially small $f$ requiring only 23k parameters and 5M floating point operations (FLOPS). We use six face verification datasets to demonstrate that our method is on par or better than state-of-the-art models, with a significantly reduced number of parameters and computational burden. Furthermore, we perform an extensive ablation study to demonstrate the importance of each element in our method., Comment: 10 pages, 5 figures

Fusing measurements from multiple, heterogeneous, partial sources, observing a common object or process, poses challenges due to the increasing availability of numbers and types of sensors. In this work we propose, implement and validate an end-to-end computational pipeline in the form of a multiple-auto-encoder neural network architecture for this task. The inputs to the pipeline are several sets of partial observations, and the result is a globally consistent latent space, harmonizing (rigidifying, fusing) all measurements. The key enabler is the availability of multiple slightly perturbed measurements of each instance:, local measurement, "bursts", that allows us to estimate the local distortion induced by each instrument. We demonstrate the approach in a sequence of examples, starting with simple two-dimensional data sets and proceeding to a Wi-Fi localization problem and to the solution of a "dynamical puzzle" arising in spatio-temporal observations of the solutions of Partial Differential Equations.

Tables are an abundant form of data with use cases across all scientific fields. Real-world datasets often contain anomalous samples that can negatively affect downstream analysis. In this work, we only assume access to contaminated data and present a diffusion-based probabilistic model effective for unsupervised anomaly detection. Our model is trained to learn the density of normal samples by utilizing a unique rejection scheme to attenuate the influence of anomalies on the density estimation. At inference, we identify anomalies as samples in low-density regions. We use real data to demonstrate that our method improves detection capabilities over baselines. Furthermore, our method is relatively stable to the dimension of the data and does not require extensive hyperparameter tuning.

Clustering is a fundamental learning task widely used as a first step in data analysis. For example, biologists use cluster assignments to analyze genome sequences, medical records, or images. Since downstream analysis is typically performed at the cluster level, practitioners seek reliable and interpretable clustering models. We propose a new deep-learning framework for general domain tabular data that predicts interpretable cluster assignments at the instance and cluster levels. First, we present a self-supervised procedure to identify the subset of the most informative features from each data point. Then, we design a model that predicts cluster assignments and a gate matrix that provides cluster-level feature selection. Overall, our model provides cluster assignments with an indication of the driving feature for each sample and each cluster. We show that the proposed method can reliably predict cluster assignments in biological, text, image, and physics tabular datasets. Furthermore, using previously proposed metrics, we verify that our model leads to interpretable results at a sample and cluster level. Our code is available at https://github.com/jsvir/idc.

We propose a modified density estimation problem that is highly effective for detecting anomalies in tabular data. Our approach assumes that the density function is relatively stable (with lower variance) around normal samples. We have verified this hypothesis empirically using a wide range of real-world data. Then, we present a variance-stabilized density estimation problem for maximizing the likelihood of the observed samples while minimizing the variance of the density around normal samples. To obtain a reliable anomaly detector, we introduce a spectral ensemble of autoregressive models for learning the variance-stabilized distribution. We have conducted an extensive benchmark with 52 datasets, demonstrating that our method leads to state-of-the-art results while alleviating the need for data-specific hyperparameter tuning. Finally, we have used an ablation study to demonstrate the importance of each of the proposed components, followed by a stability analysis evaluating the robustness of our model., Comment: 9 pages, 7 figures

The brain is likely the most complex organ, given the variety of functions it controls, the number of cells it comprises, and their corresponding diversity. Studying and identifying neurons, the brain's primary building blocks, is a crucial milestone and essential for understanding brain function in health and disease. Recent developments in machine learning have provided advanced abilities for classifying neurons. However, these methods remain black boxes with no explainability and reasoning. This paper aims to provide a robust and explainable deep-learning framework to classify neurons based on their electrophysiological activity. Our analysis is performed on data provided by the Allen Cell Types database containing a survey of biological features derived from single-cell recordings of mice and humans. First, we classify neuronal cell types of mice data to identify excitatory and inhibitory neurons. Then, neurons are categorized to their broad types in humans using domain adaptation from mice data. Lastly, neurons are classified into sub-types based on transgenic mouse lines using deep neural networks in an explainable fashion. We show state-of-the-art results in a dendrite-type classification of excitatory vs. inhibitory neurons and transgenic mouse lines classification. The model is also inherently interpretable, revealing the correlations between neuronal types and their electrophysiological properties.

Multi-modal high throughput biological data presents a great scientific opportunity and a significant computational challenge. In multi-modal measurements, every sample is observed simultaneously by two or more sets of sensors. In such settings, many observed variables in both modalities are often nuisance and do not carry information about the phenomenon of interest. Here, we propose a multi-modal unsupervised feature selection framework: identifying informative variables based on coupled high-dimensional measurements. Our method is designed to identify features associated with two types of latent low-dimensional structures: (i) shared structures that govern the observations in both modalities and (ii) differential structures that appear in only one modality. To that end, we propose two Laplacian-based scoring operators. We incorporate the scores with differentiable gates that mask nuisance features and enhance the accuracy of the structure captured by the graph Laplacian. The performance of the new scheme is illustrated using synthetic and real datasets, including an extended biological application to single-cell multi-omics.

Neural networks are omnipresent, but remain poorly understood. Their increasing complexity and use in critical systems raises the important challenge to full interpretability. We propose to address a simple well-posed learning problem: estimating the radius of a centred pulse in a one-dimensional signal or of a centred disk in two-dimensional images using a simple convolutional neural network. Surprisingly, understanding what trained networks have learned is difficult and, to some extent, counter-intuitive. However, an in-depth theoretical analysis in the one-dimensional case allows us to comprehend constraints due to the chosen architecture, the role of each filter and of the nonlinear activation function, and every single value taken by the weights of the model. Two fundamental concepts of neural networks arise: the importance of invariance and of the shape of the nonlinear activation functions.

The stochastic gradient noise (SGN) is a significant factor in the success of stochastic gradient descent (SGD). Following the central limit theorem, SGN was initially modeled as Gaussian, and lately, it has been suggested that stochastic gradient noise is better characterized using $S\alpha S$ L\'evy distribution. This claim was allegedly refuted and rebounded to the previously suggested Gaussian noise model. This paper presents solid, detailed empirical evidence that SGN is heavy-tailed and better depicted by the $S\alpha S$ distribution. Furthermore, we argue that different parameters in a deep neural network (DNN) hold distinct SGN characteristics throughout training. To more accurately approximate the dynamics of SGD near a local minimum, we construct a novel framework in $\mathbb{R}^N$, based on L\'evy-driven stochastic differential equation (SDE), where one-dimensional L\'evy processes model each parameter in the DNN. Next, we show that SGN jump intensity (frequency and amplitude) depends on the learning rate decay mechanism (LRdecay); furthermore, we demonstrate empirically that the LRdecay effect may stem from the reduction of the SGN and not the decrease in the step size. Based on our analysis, we examine the mean escape time, trapping probability, and more properties of DNNs near local minima. Finally, we prove that the training process will likely exit from the basin in the direction of parameters with heavier tail SGN. We will share our code for reproducibility.

This work generalizes the problem of unsupervised domain generalization to the case in which no labeled samples are available (completely unsupervised). We are given unlabeled samples from multiple source domains, and we aim to learn a shared predictor that assigns examples to semantically related clusters. Evaluation is done by predicting cluster assignments in previously unseen domains. Towards this goal, we propose a two-stage training framework: (1) self-supervised pre-training for extracting domain invariant semantic features. (2) multi-head cluster prediction with pseudo labels, which rely on both the feature space and cluster head prediction, further leveraging a novel prediction-based label smoothing scheme. We demonstrate empirically that our model is more accurate than baselines that require fine-tuning using samples from the target domain or some level of supervision. Our code is available at https://github.com/AmitRozner/domain-generalizable-multiple-domain-clustering., Comment: 13 pages, 3 figures

Classical methods for acoustic scene mapping require the estimation of time difference of arrival (TDOA) between microphones. Unfortunately, TDOA estimation is very sensitive to reverberation and additive noise. We introduce an unsupervised data-driven approach that exploits the natural structure of the data. Our method builds upon local conformal autoencoders (LOCA) - an offline deep learning scheme for learning standardized data coordinates from measurements. Our experimental setup includes a microphone array that measures the transmitted sound source at multiple locations across the acoustic enclosure. We demonstrate that LOCA learns a representation that is isometric to the spatial locations of the microphones. The performance of our method is evaluated using a series of realistic simulations and compared with other dimensionality-reduction schemes. We further assess the influence of reverberation on the results of LOCA and show that it demonstrates considerable robustness.

We propose a novel voice activity detection (VAD) model in a low-resource environment. Our key idea is to model VAD as a denoising task, and construct a network that is designed to identify nuisance features for a speech classification task. We train the model to simultaneously identify irrelevant features while predicting the type of speech event. Our model contains only 7.8K parameters, outperforms the previously proposed methods on the AVA-Speech evaluation set, and provides comparative results on the HAVIC dataset. We present its architecture, experimental results, and ablation study on the model's components. We publish the code and the models here https://www.github.com/jsvir/vad.

When presented with a binary classification problem where the data exhibits severe class imbalance, most standard predictive methods may fail to accurately model the minority class. We present a model based on Generative Adversarial Networks which uses additional regularization losses to map majority samples to corresponding synthetic minority samples. This translation mechanism encourages the synthesized samples to be close to the class boundary. Furthermore, we explore a selection criterion to retain the most useful of the synthesized samples. Experimental results using several downstream classifiers on a variety of tabular class-imbalanced datasets show that the proposed method improves average precision when compared to alternative re-weighting and oversampling techniques.

Current approaches to generic segmentation start by creating a hierarchy of nested image partitions and then specifying a segmentation from it. Our first contribution is to describe several ways, most of them new, for specifying segmentations using the hierarchy elements. Then, we consider the best hierarchy-induced segmentation specified by a limited number of hierarchy elements. We focus on a common quality measure for binary segmentations, the Jaccard index (also known as IoU). Optimizing the Jaccard index is highly non-trivial, and yet we propose an efficient approach for doing exactly that. This way we get algorithm-independent upper bounds on the quality of any segmentation created from the hierarchy. We found that the obtainable segmentation quality varies significantly depending on the way that the segments are specified by the hierarchy elements, and that representing a segmentation with only a few hierarchy elements is often possible. (Code is available).

Learning from imbalanced data is one of the most significant challenges in real-world classification tasks. In such cases, neural networks performance is substantially impaired due to preference towards the majority class. Existing approaches attempt to eliminate the bias through data re-sampling or re-weighting the loss in the learning process. Still, these methods tend to overfit the minority samples and perform poorly when the structure of the minority class is highly irregular. Here, we propose a novel deep meta-learning technique to augment a given imbalanced dataset with new minority instances. These additional data are incorporated in the classifier's deep-learning process, and their contributions are learned explicitly. The advantage of the proposed method is demonstrated on synthetic and real-world datasets with various imbalance ratios., Comment: arXiv admin note: text overlap with arXiv:1906.05591, arXiv:2202.09318

Consider the problem of simultaneous estimation and support recovery of the coefficient vector in a linear data model with additive Gaussian noise. We study the problem of estimating the model coefficients based on a recently proposed non-convex regularizer, namely the stochastic gates (STG) [Yamada et al. 2020]. We suggest a new projection-based algorithm for solving the STG regularized minimization problem, and prove convergence and support recovery guarantees of the STG-estimator for a range of random and non-random design matrix setups. Our new algorithm has been shown to outperform the existing STG algorithm and other classical estimators for support recovery in various real and synthetic data analyses., Comment: 15 pages, 7 figures, extended the theoretical studies and numerical analyses to other probabilistic models (subgaussian, moment constraints etc.)

Modern datasets often contain large subsets of correlated features and nuisance features, which are not or loosely related to the main underlying structures of the data. Nuisance features can be identified using the Laplacian score criterion, which evaluates the importance of a given feature via its consistency with the Graph Laplacians' leading eigenvectors. We demonstrate that in the presence of large numbers of nuisance features, the Laplacian must be computed on the subset of selected features rather than on the complete feature set. To do this, we propose a fully differentiable approach for unsupervised feature selection, utilizing the Laplacian score criterion to avoid the selection of nuisance features. We employ an autoencoder architecture to cope with correlated features, trained to reconstruct the data from the subset of selected features. Building on the recently proposed concrete layer that allows controlling for the number of selected features via architectural design, simplifying the optimization process. Experimenting on several real-world datasets, we demonstrate that our proposed approach outperforms similar approaches designed to avoid only correlated or nuisance features, but not both. Several state-of-the-art clustering results are reported.

Anomalies (or outliers) are prevalent in real-world empirical observations and potentially mask important underlying structures. Accurate identification of anomalous samples is crucial for the success of downstream data analysis tasks. To automatically identify anomalies, we propose Probabilistic Robust AutoEncoder (PRAE). PRAE aims to simultaneously remove outliers and identify a low-dimensional representation for the inlier samples. We first present the Robust AutoEncoder (RAE) objective as a minimization problem for splitting the data into inliers and outliers. Our objective is designed to exclude outliers while including a subset of samples (inliers) that can be effectively reconstructed using an AutoEncoder (AE). RAE minimizes the autoencoder's reconstruction error while incorporating as many samples as possible. This could be formulated via regularization by subtracting an $\ell_0$ norm counting the number of selected samples from the reconstruction term. Unfortunately, this leads to an intractable combinatorial problem. Therefore, we propose two probabilistic relaxations of RAE, which are differentiable and alleviate the need for a combinatorial search. We prove that the solution to the PRAE problem is equivalent to the solution of RAE. We use synthetic data to show that PRAE can accurately remove outliers in a wide range of contamination levels. Finally, we demonstrate that using PRAE for anomaly detection leads to state-of-the-art results on various benchmark datasets.

Tabular datasets with low-sample-size or many variables are prevalent in biomedicine. Practitioners in this domain prefer linear or tree-based models over neural networks since the latter are harder to interpret and tend to overfit when applied to tabular datasets. To address these neural networks' shortcomings, we propose an intrinsically interpretable network for heterogeneous biomedical data. We design a locally sparse neural network where the local sparsity is learned to identify the subset of most relevant features for each sample. This sample-specific sparsity is predicted via a \textit{gating} network, which is trained in tandem with the \textit{prediction} network. By forcing the model to select a subset of the most informative features for each sample, we reduce model overfitting in low-sample-size data and obtain an interpretable model. We demonstrate that our method outperforms state-of-the-art models when applied to synthetic or real-world biomedical datasets using extensive experiments. Furthermore, the proposed framework dramatically outperforms existing schemes when evaluating its interpretability capabilities. Finally, we demonstrate the applicability of our model to two important biomedical tasks: survival analysis and marker gene identification.