37 results on '"Kholova’ J"'
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2. Phytoliths as indicators of plant water availability: The case of millets cultivation in the Indus Valley civilization
- Author
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D'Agostini, F., Ruiz-Pérez, J., Madella, M., Vadez, V., Kholova, J., and Lancelotti, C.
- Published
- 2023
- Full Text
- View/download PDF
3. Sorghum: General Crop-Modelling Tools Guiding Principles and Use of Crop Models in Support of Crop Improvement Programs in Developing Countries
- Author
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Kholová, J., Adam, M., Diancoumba, M., Hammer, G., Hajjarpoor, A., Chenu, K., Jarolímek, J., Tonapi, Vilas A., editor, Talwar, Harvinder Singh, editor, Are, Ashok Kumar, editor, Bhat, B. Venkatesh, editor, Reddy, Ch. Ravinder, editor, and Dalton, Timothy J., editor
- Published
- 2020
- Full Text
- View/download PDF
4. Characterization of ‘QTL-hotspot’ introgression lines reveals physiological mechanisms and candidate genes associated with drought adaptation in chickpea
- Author
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Barmukh, R., Roorkiwal, M., Dixit, G.P., Bajaj, P., Kholova, J., Smith, M.R., Chitikineni, A., Bharadwaj, C., Sreeman, S.M., Rathore, A., Tripathi, S., Yasin, M., Vijayakumar, A.G., Rao Sagurthi, S., Siddique, K.H.M., Varshney, R.K., Foyer, C., Barmukh, R., Roorkiwal, M., Dixit, G.P., Bajaj, P., Kholova, J., Smith, M.R., Chitikineni, A., Bharadwaj, C., Sreeman, S.M., Rathore, A., Tripathi, S., Yasin, M., Vijayakumar, A.G., Rao Sagurthi, S., Siddique, K.H.M., Varshney, R.K., and Foyer, C.
- Abstract
‘QTL-hotspot’ is a genomic region on linkage group 04 (CaLG04) in chickpea (Cicer arietinum) that harbours major-effect quantitative trait loci (QTLs) for multiple drought-adaptive traits, and it therefore represents a promising target for improving drought adaptation. To investigate the mechanisms underpinning the positive effects of ‘QTL-hotspot’ on seed yield under drought, we introgressed this region from the ICC 4958 genotype into five elite chickpea cultivars. The resulting introgression lines (ILs) and their parents were evaluated in multi-location field trials and semi-controlled conditions. The results showed that the ‘QTL-hotspot’ region improved seed yield under rainfed conditions by increasing seed weight, reducing the time to flowering, regulating traits related to canopy growth and early vigour, and enhancing transpiration efficiency. Whole-genome sequencing data analysis of the ILs and parents revealed four genes underlying the ‘QTL-hotspot’ region associated with drought adaptation. We validated diagnostic KASP markers closely linked to these genes using the ILs and their parents for future deployment in chickpea breeding programs. The CaTIFY4b-H2 haplotype of a potential candidate gene CaTIFY4b was identified as the superior haplotype for 100-seed weight. The candidate genes and superior haplotypes identified in this study have the potential to serve as direct targets for genetic manipulation and selection for chickpea improvement.
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- 2022
5. Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea
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Barmukh, R., Roorkiwal, M., Garg, V., Khan, A.W., German, L., Jaganathan, D., Chitikineni, A., Kholova, J., Kudapa, H., Sivasakthi, K., Samineni, S., Kale, S.M., Gaur, P.M., Sagurthi, S.R., Benitez‐Alfonso, Y., Varshney, R.K., Barmukh, R., Roorkiwal, M., Garg, V., Khan, A.W., German, L., Jaganathan, D., Chitikineni, A., Kholova, J., Kudapa, H., Sivasakthi, K., Samineni, S., Kale, S.M., Gaur, P.M., Sagurthi, S.R., Benitez‐Alfonso, Y., and Varshney, R.K.
- Abstract
Chickpea production is vulnerable to drought stress. Identifying the genetic components underlying drought adaptation is crucial for enhancing chickpea productivity. Here, we present the fine mapping and characterization of ‘QTL-hotspot’, a genomic region controlling chickpea growth with positive consequences on crop production under drought. We report that a non-synonymous substitution in the transcription factor CaTIFY4b regulates seed weight and organ size in chickpea. Ectopic expression of CaTIFY4b in Medicago truncatula enhances root growth under water deficit. Our results suggest that allelic variation in ‘QTL-hotspot’ improves pre-anthesis water use, transpiration efficiency, root architecture and canopy development, enabling high-yield performance under terminal drought conditions. Gene expression analysis indicated that CaTIFY4b may regulate organ size under water deficit by modulating the expression of GRF-INTERACTING FACTOR1 (GIF1), a transcriptional co-activator of Growth-Regulating Factors. Taken together, our study offers new insights into the role of CaTIFY4b and on diverse physiological and molecular mechanisms underpinning chickpea growth and production under specific drought scenarios.
- Published
- 2022
6. In pursuit of a better world: Crop improvement and the CGIAR
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Kholova, J.; Urban, M. O.; Cock, J.; Arcos, J.; Arnaud, E.; Aytekin, Destan and Kholova, J.; Urban, M. O.; Cock, J.; Arcos, J.; Arnaud, E.; Aytekin, Destan
- Abstract
PR, IFPRI3; CRP4; HarvestPlus; ISI; Feed the Future Initiative, HarvestPlus; A4NH, CGIAR Research Program on Agriculture for Nutrition and Health (A4NH), The CGIAR crop improvement (CI) programs, unlike commercial CI programs, which are mainly geared to profit though meeting farmers’ needs, are charged with meeting multiple objectives with target populations that include both farmers and the community at large. We compiled the opinions from more than thirty experts in the private and public sector on key strategies, methodologies and activities that could help CGIAR meet the challenges of providing farmers with improved varieties while simultaneously meeting the goals of: (i) nutrition, health, and food security; (ii) poverty reduction, livelihoods, and jobs; (iii) gender equality, youth and inclusion; (iv) climate adaptation and mitigation and (v) environmental health and biodiversity. We review the crop improvement processes starting with crop choice, moving through to breeding objectives, production of potential new varieties, selection and finally adoption by farmers. The importance of multi-disciplinary teams working towards common
- Published
- 2021
7. MULTI-SCALE TIME SERIES ANALYSIS OF EVAPOTRANSPIRATION FOR HIGH-THROUGHPUT PHENOTYPING FREQUENCY OPTIMIZATION
- Author
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Kar, S., primary, Tanaka, R., additional, Iwata, H., additional, Kholova, J., additional, Durbha, S. S., additional, Adinarayana, J., additional, and Vadez, V., additional
- Published
- 2020
- Full Text
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8. Transpiration difference under high evaporative demand in chickpea (Cicer arietinumL.) may be explained by differences in the water transport pathway in the root cylinder
- Author
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Sivasakthi, K., Tharanya, M., Zaman-Allah, M., Kholova, J., Thirunalasundari, T., and Vadez, Vincent
- Subjects
roots ,water saving ,hydraulics ,aquaporins ,drought ,Apoplastic pathway ,cell-to-cell pathway - Abstract
Terminal drought substantially reduces chickpea yield. Reducing water use at vegetative stage by reducing transpiration under high vapor pressure deficit (VPD),i.e.under dry/hot conditions, contributes to drought adaptation. We hypothesized that this trait could relate to differences in a genotype's dependence on root water transport pathways and hydraulics. Transpiration rate responses in conservative and profligate chickpea genotypes were evaluated under increasing VPD in the presence/absence of apoplastic and cell-to-cell transport inhibitors. Conservative genotypes ICC 4958 and ICC 8058 restricted transpiration under high VPD compared to the profligate genotypes ICC 14799 and ICC 867. Profligate genotypes were more affected by aquaporin inhibition of the cell-to-cell pathway than conservative genotypes, as measured by the root hydraulic conductance and transpiration under high VPD. Aquaporin inhibitor treatment also led to a larger reduction in root hydraulic conductivity in profligate than in conservative genotypes. In contrast, blockage of the apoplastic pathway in roots decreased transpiration more in conservative than in profligate genotypes. Interestingly, conservative genotypes had high early vigour, whereas profligate genotypes had low early vigour. In conclusion, profligate genotypes depend more on the cell-to-cell pathway, which might explain their higher root hydraulic conductivity, whereas water-saving by restricting transpiration led to higher dependence on the apoplastic pathway. This opens the possibility to screen for conservative or profligate chickpea phenotypes using inhibitors, itself opening to the search of the genetic basis of these differences.
- Published
- 2020
9. Maize, sorghum, and pearl millet have highly contrasting species strategies to adapt to water stress and climate change-like conditions
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Choudhary, S., Guha, A., Kholova, J., Pandravada, A., Messina, C. D., Cooper, M., and Vadez, Vincent
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Progressive soil drying (DD) ,Leaf expansion rate (LER) ,Fraction of transpirable soil water (FTSW) ,Transpiration rate (TR) ,Atmospheric vapor pressure deficit ,Transpiration efficiency (TE) ,(VPD) ,C-4 cereals - Abstract
This study compared maize, sorghum and pearl-millet, leading C-4 cereals, for the transpiration rate (TR) response to increasing atmospheric and soil water stress. The TR response to transiently increasing VPD (0.9-4.1 kPa) and the transpiration and leaf area expansion response to progressive soil drying were measured in controlled conditions at early vegetative stage in 10-16 genotypes of each species grown in moderate or high vapor pressure deficit (VPD) conditions. Maize grown under moderate VPD conditions restricted TR under high VPD, but not sorghum and pearl millet. By contrast, when grown under high VPD, all species increased TR upon increasing VPD, suggesting a loss of TR responsiveness. Sorghum and pearl-millet grown under high VPD reduced leaf area, but not maize. Upon progressive soil drying, maize reduced transpiration at higher soil moisture than sorghum and pearl millet, especially under high VPD, and leaf area expansion declined at similar or lower soil moisture than transpiration in maize and sorghum. It is concluded that maize conserves water by restricting transpiration upon increasing VPD and under higher soil moisture than sorghum and millet, giving maize significantly higher TE, whereas sorghum and pearl millet rely mostly on reduced leaf area and somewhat on transpiration restriction.
- Published
- 2020
10. An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario
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Palit, P., Kudapa, H., Zougmore, R., Kholova, J., Whitbread, A., Sharma, M., Varshney, R.K., Palit, P., Kudapa, H., Zougmore, R., Kholova, J., Whitbread, A., Sharma, M., and Varshney, R.K.
- Abstract
How unprecedented changes in climatic conditions will impact yield and productivity of some crops and their response to existing stresses, abiotic and biotic interactions is a key global concern. Climate change can also alter natural species’ abundance and distribution or favor invasive species, which in turn can modify ecosystem dynamics and the provisioning of ecosystem services. Basic anatomical differences in C3 and C4 plants lead to their varied responses to climate variations. In plants having a C3 pathway of photosynthesis, increased atmospheric carbon dioxide (CO2) positively regulates photosynthetic carbon (C) assimilation and depresses photorespiration. Legumes being C3 plants, they may be in a favorable position to increase biomass and yield through various strategies. This paper comprehensively presents recent progress made in the physiological and molecular attributes in plants with special emphasis on legumes under elevated CO2 conditions in a climate change scenario. A strategic research framework for future action integrating genomics, systems biology, physiology and crop modelling approaches to cope with changing climate is also discussed. Advances in sequencing and phenotyping methodologies make it possible to use vast genetic and genomic resources by deploying high resolution phenotyping coupled with high throughput multi-omics approaches for trait improvement. Integrated crop modelling studies focusing on farming systems design and management, prediction of climate impacts and disease forecasting may also help in planning adaptation. Hence, an integrated research framework combining genomics, plant molecular physiology, crop breeding, systems biology and integrated crop-soil-climate modelling will be very effective to cope with climate change.
- Published
- 2020
11. Data Pre-processing for Agricultural Simulations
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Jarolímek, J., Pavlík, J., Kholova, J., and Ronanki, S.
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Agricultural Finance ,parallel processing ,Agricultural and Food Policy ,big data ,software automation ,APSIM ,Agribusiness ,yield optimization ,data processing - Published
- 2019
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12. Improving biotic and abiotic stress tolerance of cultivated Pearl Millet (Pennisetum glaucum L.) through Introgression of alleles from wild species
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Sharma, S., Sharma, R., Singh, I., Jayalekha, A.K., Yadav, Y., Vadez, V., Gupta, S.K., Kholova, J., Singh Deora, V., Yadav, D., Gangashetty, P., Varshney, R.K., Sharma, S., Sharma, R., Singh, I., Jayalekha, A.K., Yadav, Y., Vadez, V., Gupta, S.K., Kholova, J., Singh Deora, V., Yadav, D., Gangashetty, P., and Varshney, R.K.
- Abstract
Pearl millet (Pennisetum glaucum L.) is the sixth most important cereal crop globally, predominantly grown for food and forage in arid and semi-arid tropical regions. Under climate change, pearl millet will face more adverse climatic conditions, particularly due to drought and heat stress and newly emerging disease, blast. Crop wild relatives (CWR) are the reservoir of valuable genes for tolerance/resistance to various abiotic/biotic stresses. Primary genepool species Pennisetum glaucum subsp. violaceum evolved in hot and dry conditions of Sahel region in Africa, grows in even more arid regions than the cultigen, and thus possess higher levels of drought and heat tolerance. Four pre-breeding populations were developed using wild Pennisetum violaceum accessions and cultivated pearl millet genotypes following advanced backcross approach. These populations were evaluated for flowering-stage heat stress during 2018 summer season across three locations, Agra in Uttar Pradesh, and SK Nagar and Tharad in Gujarat in India. These populations were also evaluated for terminal drought during 2018 rainy season at two locations, Hisar and Bawal. Promising ILs having improved heat and drought tolerance were identified. These populations were also evaluated under LeasyScan for the canopy-related parameters, as well as at LysiField facility for the traits related to water-use and water- use efficiency under well-watered and water-stress conditions. Further, screening of promising drought and/or heat tolerant ILs for five diverse pathotypes, Pg 45, Pg 138, Pg 186, Pg 204 and Pg 232 of blast resulted in the identification of resistant ILs. Preliminary screening of three populations for Striga hermonthica in Niger resulted in the identification of several ILs having improved Striga resistance. Re-screening of the material will be done during 2019 rainy season to confirm the results. Utilization of these promising ILs in breeding programs will assist in developing new varieties/hybrids
- Published
- 2019
13. W903: Unravelling the physiological basis of drought tolerance regulated By 'QTL-Hotspot' region in chickpea (Cicer arietinum L.)
- Author
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Barmukh, R., Roorkiwal, M., Thudi, M., Kholova, J., Gaur, P.M., Sutton, T., Varshney, R.K., Barmukh, R., Roorkiwal, M., Thudi, M., Kholova, J., Gaur, P.M., Sutton, T., and Varshney, R.K.
- Abstract
Enhancing drought tolerance in chickpea, an important grain legume for people in the semi-arid regions of the world, is crucial for improving its productivity in the context of changing climatic scenarios. Terminal drought is one of the major constraints limiting chickpea production and causes up to 50% yield losses. Extensive genotypic and phenotypic data analyses revealed the presence of a QTL cluster on CaLG04 harbouring robust main-effect QTLs for 12 traits and explaining up to 58.20% phenotypic variation, referred as “QTL-hotspot”. To identify candidate genes related to drought tolerance, we narrowed down the “QTL-hotspot” region from ca. 3 Mb to ~300 kb by using a combination of bin mapping based QTL analysis and gene enrichment analysis. As a result, the “QTL-hotspot” region was split into two sub-regions, namely “QTL-hotspot_a” (139.22 kb; 15 genes) and “QTL-hotspot_b” (153.36 kb; 11 genes). Subsequently, we characterized the fine mapping population derived from ICC4958 (drought tolerant) and ICC1882 (drought sensitive) using different phenotyping platforms like LeasyScan, lysimeter and under field conditions. We identified major QTLs for canopy development, biomass, yield and water-use related traits co-localized in “QTL-hotspot” region, explaining up to 74% phenotypic variation. Our results provided crucial evidence of genetic linkages between traits phenotyped at multiple levels of plant organization, thereby increasing our cognizance of complex traits like drought. Analyses of genetic variation in the refined “QTL-hotspot” region among 3,000 diverse chickpea genomes identified mutations in five promising candidate genes that can be deployed in chickpea breeding programs and future sustainable agriculture.
- Published
- 2019
14. W004: Dissection of physiological and molecular mechanisms of drought tolerance in chickpea
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Smith, M., Kholova, J., Roorkiwal, M., Barmukh, R., Thudi, M., Varshney, R.K., Smith, M., Kholova, J., Roorkiwal, M., Barmukh, R., Thudi, M., and Varshney, R.K.
- Abstract
Chickpea (Cicer arietinum L.) is an important grain legume grown in semi-arid tropical agroecoystems. Typically cultivated on the stored soil moisture from the preceding season, the main abiotic stress to impact chickpea production is terminal drought. In order to improve chickpea cultivars for water-limited environments, we have identified the mechanisms used by drought adapted chickpea during the season. The primary goal is to increase water use efficiency, improving yields with less water. Chickpea populations segregating for traits related to water use efficiency, including root traits and canopy vigour, have been characterised and markers associated with individual traits have been identified. Our findings highlight the importance of multiple traits involved in the adaptation of chickpea grown under terminal drought stress. Incorporation of these traits in to breeding programs will involve the use of high-throughput phenotyping methods and molecular advances to rapidly phenotype populations.
- Published
- 2019
15. Transpiration difference under high evaporative demand in chickpea (Cicer arietinum L.) may be explained by differences in the water transport pathway in the root cylinder.
- Author
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Sivasakthi, K., Tharanya, M., Zaman-Allah, M., Kholova, J., Thirunalasundari, T., and Vadez, V.
- Subjects
CHICKPEA ,HYDRAULIC conductivity ,VAPOR pressure ,WATER use ,GENOTYPES ,HYDRAULICS - Abstract
Terminal drought substantially reduces chickpea yield. Reducing water use at vegetative stage by reducing transpiration under high vapor pressure deficit (VPD), i.e. under dry/hot conditions, contributes to drought adaptation. We hypothesized that this trait could relate to differences in a genotype's dependence on root water transport pathways and hydraulics. • Transpiration rate responses in conservative and profligate chickpea genotypes were evaluated under increasing VPD in the presence/absence of apoplastic and cell-to-cell transport inhibitors. • Conservative genotypes ICC 4958 and ICC 8058 restricted transpiration under high VPD compared to the profligate genotypes ICC 14799 and ICC 867. Profligate genotypes were more affected by aquaporin inhibition of the cell-to-cell pathway than conservative genotypes, as measured by the root hydraulic conductance and transpiration under high VPD. Aquaporin inhibitor treatment also led to a larger reduction in root hydraulic conductivity in profligate than in conservative genotypes. In contrast, blockage of the apoplastic pathway in roots decreased transpiration more in conservative than in profligate genotypes. Interestingly, conservative genotypes had high early vigour, whereas profligate genotypes had low early vigour. • In conclusion, profligate genotypes depend more on the cell-to-cell pathway, which might explain their higher root hydraulic conductivity, whereas water-saving by restricting transpiration led to higher dependence on the apoplastic pathway. This opens the possibility to screen for conservative or profligate chickpea phenotypes using inhibitors, itself opening to the search of the genetic basis of these differences. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
16. 'Role of pearl millet Aquaporin genes in abiotic stress response'
- Author
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Reddy PS, K, Divya, Kaliamoorthy Sivasakthi, Tharanya M, A, Lale, Bhatnagar-Mathur P, Kholova’ J, Sharma, Kiran K, and Vadaz, Vincent
- Published
- 2017
- Full Text
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17. LeasyScan: 3D scanning of crop canopy plus seamless monitoring of water to harness the genetics of key traits for drought adaptation
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Vadez V, Kholova J, Srikanth M, B, Rekha, Tharanya M, Kaliamoorthy Sivasakthi, Alimagham M, G, Karthika, and Keerthi C
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- 2017
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18. High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea
- Author
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Sivasakthi, K., Thudi, M., Tharanya, M., Kale, S.M., Kholova, J., Halime, M.H., Jaganathan, D., Baddam, R., Thirunalasundari, T., Gaur, P.M., Varshney, R.K., Vadez, V., Sivasakthi, K., Thudi, M., Tharanya, M., Kale, S.M., Kholova, J., Halime, M.H., Jaganathan, D., Baddam, R., Thirunalasundari, T., Gaur, P.M., Varshney, R.K., and Vadez, V.
- Abstract
Terminal drought stress leads to substantial yield losses in chickpea (Cicer arietinum L.). Water conservation at vegetative growth (canopy conductivity and canopy size and development) allow plants to increase soil water extraction during grain filling and are hypothesised to help chickpea adaptation to water limited environments. Plant vigour and water saving traits were phenotyped in 232 recombinant inbred lines (RILs), derived from a cross between ICC4958 and ICC1882, at 28 days after sowing under well water conditions using a high throughput phenotyping platform. Different density genetic maps (241-SSRLow density, 1007-SSR+SNPs-High density and 1557-SNPs-Ultra high density) were used for QTLs identification. Several major QTLs (M-QTLs) for plant vigour traits (3D-leaf area, shoot biomass, plant height and growth related traits) were identified on CaLG04, and co-mapped with previously identified and fine mapped major drought tolerance QTL-hotspot region on CaLG04 (~300Kb).The canopy conductance trait (e.g Transpiration rate) had a M-QTL mapped on CaLG03 using ultra-high density bin markers. Plant vigour traits on CaLG04 and canopy conductance related traits on CaLG03 provide opportunity to manipulate these loci to tailor recombinants having lower transpiration rate and high plant vigour. This ideotype might be enhancing the water stress adaptation in chickpea. To test this hypothesis, a subset of 40 RILs contrasting for vigour and water use traits was tested in lysimeters and field under different water stress treatments. High vigour low water use lines had higher seed yield under severe water stress treatments than high vigour and high water use lines, validating the hypothesis.
- Published
- 2017
19. Transpiration efficiency variations in the pearl millet reference collection PMiGAP.
- Author
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Grégoire L, Kholova J, Srivastava R, Hash CT, Vigouroux Y, and Vadez V
- Subjects
- Droughts, Water metabolism, Biomass, Plant Breeding methods, Genetic Variation, Pennisetum genetics, Pennisetum physiology, Pennisetum growth & development, Plant Transpiration physiology, Genotype
- Abstract
Transpiration efficiency (TE), the biomass produced per unit of water transpired, is a key trait for crop performance under limited water. As water becomes scarce, increasing TE would contribute to increase crop drought tolerance. This study is a first step to explore pearl millet genotypic variability for TE on a large and representative diversity panel. We analyzed TE on 537 pearl millet genotypes, including inbred lines, test-cross hybrids, and hybrids bred for different agroecological zones. Three lysimeter trials were conducted in 2012, 2013 and 2015, to assess TE both under well-watered and terminal-water stress conditions. We recorded grain yield to assess its relationship with TE. Up to two-fold variation for TE was observed over the accessions used. Mean TE varied between inbred and testcross hybrids, across years and was slightly higher under water stress. TE also differed among hybrids developed for three agroecological zones, being higher in hybrids bred for the wetter zone, underlining the importance of selecting germplasm according to the target area. Environmental conditions triggered large Genotype x Environment (GxE) interactions, although TE showed some high heritability. Transpiration efficiency was the second contributor to grain yield after harvest index, highlighting the importance of integrating it into pearl millet breeding programs. Future research on TE in pearl millet should focus (i) on investigating the causes of its plasticity i.e. the GxE interaction (ii) on studying its genetic basis and its association with other important physiological traits., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Grégoire et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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20. Author Correction: Genetic approaches for assessment of phosphorus use efficiency in groundnut (Arachis hypogaea L.).
- Author
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Kadirimangalam SR, Jadhav Y, Nagamadhuri KV, Putta L, Murugesan T, Variath MT, Vemula AK, Manohar SS, Chaudhari S, Choudhary S, Kholova J, and Pasupuleti J
- Published
- 2023
- Full Text
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21. Genetic approaches for assessment of phosphorus use efficiency in groundnut (Arachis hypogaea L.).
- Author
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Kadirimangalam SR, Jadhav Y, Nagamadhuri KV, Putta L, Murugesan T, Variath MT, Vemula AK, Manohar SS, Chaudhari S, Choudhary S, Kholova J, and Pasupuleti J
- Subjects
- Plant Breeding, Phenotype, Soil, Arachis genetics, Phosphorus
- Abstract
Production of phosphorus efficient genotypes in groundnut can improve and also reduces environmental pollution. Identification of P-efficient groundnut genotypes is a need of the hour to sustain in P-deficient soils. The pot experiment showed significant differences between genotypes (G) and treatments (T) for all the traits and G × T interaction for majority of traits. The G × T × Y interaction effects were also significant for all the traits except leaf P% (LP%), leaf acid phosphatase (LAP) and root dry weight (RDW). In lysimeter experiment, the effect of G, T and G × T were significant for leaf dry weight (LDW), stem dry weight (SDW), total transpiration (TT) and transpiration efficiency (TE). For traits, LDW, SDW, TT, TE, ICGV 00351 and ICGS 76; for SDW, TT, ICGV 02266 are best performers under both P-sufficient and deficient conditions. Based on P-efficiency indices and surrogate traits of P-uptake, ICGV's 02266, 05155, 00308, 06040 and 06146 were considered as efficient P-responding genotypes. From GGE biplot, ICGV 06146 under P-deficient and TAG 24 under both P-sufficient and deficient conditions are portrayed as best performer. ICGV 06146 was identified as stable pod yielder and a promising genotype for P-deficient soils. The genotypes identified in this study can be used as a parent in developing mapping population to decipher the genetics and to devleop groundnut breeding lines suitable to P-deficient soils., (© 2022. The Author(s).)
- Published
- 2022
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22. Higher sowing density of pearl millet increases productivity and water use efficiency in high evaporative demand seasons.
- Author
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Pilloni R, Faye A, Kakkera A, Kholova J, Badji R, Faye C, and Vadez V
- Abstract
Introduction: Pearlmillet is themain subsistence crop for smallholder farmers systemswhere it is grown at low plant density. Intensifying pearl millet cultivation could boost productivity although it may have trade-offs. Increasing planting density would indeed increase the leaf area and the related water budget, whereas a denser canopy could create a more favorable canopymicroclimate to the benefit of the water use efficiency (WUE) of the crops. The first aim of this work was to test the yield response of popular pearlmillet varieties to an increased density and to assess possible genotypic variation in this response. The second aim was to measure the water use and the WUE of the crop in different densities., Method: To this end we designed several field and lysimetric experiments To increase the robustness of the results, these trials were carried out in India and Senegal, using two independent sets of genotypes adapted to both sites., Results: In the field, the higher sowing density significantly increased yield in all genotypes when trials were carried out in high evaporative demand conditions. There was no genotype x density interaction in these trials, suggesting no genotypic variation in the response to density increase. The high-density treatment also decreased the vapor pressure deficit (VPD) in the canopies, both in the field and in the lysimeter experiments. In the lysimeter trials, although the higher density treatment increased water use, the resulting increase in biomass was proportionally higher, hence increasingWUE of the crops in all genotypes under high density. The increase in yield under high density was closely related to the increase in WUE, although this link was more tight in the high- than in the low evaporative demand seasons. This confirmed a strong environmental effect on the response to density of all genotypes tested., Discussion: Although they did not open a scope for breeding density tolerant cultivars, these results highlight the possibility to improve pearl millet yield by increasing the density, targeting specifically areas facing high evaporative demand., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Pilloni, Faye, Kakkera, Kholova, Badji, Faye and Vadez.)
- Published
- 2022
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23. Characterization of 'QTL-hotspot' introgression lines reveals physiological mechanisms and candidate genes associated with drought adaptation in chickpea.
- Author
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Barmukh R, Roorkiwal M, Dixit GP, Bajaj P, Kholova J, Smith MR, Chitikineni A, Bharadwaj C, Sreeman SM, Rathore A, Tripathi S, Yasin M, Vijayakumar AG, Rao Sagurthi S, Siddique KHM, and Varshney RK
- Subjects
- Genomics, Cicer genetics
- Abstract
'QTL-hotspot' is a genomic region on linkage group 04 (CaLG04) in chickpea (Cicer arietinum) that harbours major-effect quantitative trait loci (QTLs) for multiple drought-adaptive traits, and it therefore represents a promising target for improving drought adaptation. To investigate the mechanisms underpinning the positive effects of 'QTL-hotspot' on seed yield under drought, we introgressed this region from the ICC 4958 genotype into five elite chickpea cultivars. The resulting introgression lines (ILs) and their parents were evaluated in multi-location field trials and semi-controlled conditions. The results showed that the 'QTL-hotspot' region improved seed yield under rainfed conditions by increasing seed weight, reducing the time to flowering, regulating traits related to canopy growth and early vigour, and enhancing transpiration efficiency. Whole-genome sequencing data analysis of the ILs and parents revealed four genes underlying the 'QTL-hotspot' region associated with drought adaptation. We validated diagnostic KASP markers closely linked to these genes using the ILs and their parents for future deployment in chickpea breeding programs. The CaTIFY4b-H2 haplotype of a potential candidate gene CaTIFY4b was identified as the superior haplotype for 100-seed weight. The candidate genes and superior haplotypes identified in this study have the potential to serve as direct targets for genetic manipulation and selection for chickpea improvement., (© The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
- Published
- 2022
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24. Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea.
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Barmukh R, Roorkiwal M, Garg V, Khan AW, German L, Jaganathan D, Chitikineni A, Kholova J, Kudapa H, Sivasakthi K, Samineni S, Kale SM, Gaur PM, Sagurthi SR, Benitez-Alfonso Y, and Varshney RK
- Subjects
- Adaptation, Physiological genetics, Genetic Variation genetics, Transcription Factors genetics, Transcription Factors metabolism, Water metabolism, Cicer genetics, Droughts
- Abstract
Chickpea production is vulnerable to drought stress. Identifying the genetic components underlying drought adaptation is crucial for enhancing chickpea productivity. Here, we present the fine mapping and characterization of 'QTL-hotspot', a genomic region controlling chickpea growth with positive consequences on crop production under drought. We report that a non-synonymous substitution in the transcription factor CaTIFY4b regulates seed weight and organ size in chickpea. Ectopic expression of CaTIFY4b in Medicago truncatula enhances root growth under water deficit. Our results suggest that allelic variation in 'QTL-hotspot' improves pre-anthesis water use, transpiration efficiency, root architecture and canopy development, enabling high-yield performance under terminal drought conditions. Gene expression analysis indicated that CaTIFY4b may regulate organ size under water deficit by modulating the expression of GRF-INTERACTING FACTOR1 (GIF1), a transcriptional co-activator of Growth-Regulating Factors. Taken together, our study offers new insights into the role of CaTIFY4b and on diverse physiological and molecular mechanisms underpinning chickpea growth and production under specific drought scenarios., (© 2022 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.)
- Published
- 2022
- Full Text
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25. X-ray driven peanut trait estimation: computer vision aided agri-system transformation.
- Author
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Domhoefer M, Chakraborty D, Hufnagel E, Claußen J, Wörlein N, Voorhaar M, Anbazhagan K, Choudhary S, Pasupuleti J, Baddam R, Kholova J, and Gerth S
- Abstract
Background: In India, raw peanuts are obtained by aggregators from smallholder farms in the form of whole pods and the price is based on a manual estimation of basic peanut pod and kernel characteristics. These methods of raw produce evaluation are slow and can result in procurement irregularities. The procurement delays combined with the lack of storage facilities lead to fungal contaminations and pose a serious threat to food safety in many regions. To address this gap, we investigated whether X-ray technology could be used for the rapid assessment of the key peanut qualities that are important for price estimation., Results: We generated 1752 individual peanut pod 2D X-ray projections using a computed tomography (CT) system (CTportable160.90). Out of these projections we predicted the kernel weight and shell weight, which are important indicators of the produce price. Two methods for the feature prediction were tested: (i) X-ray image transformation (XRT) and (ii) a trained convolutional neural network (CNN). The prediction power of these methods was tested against the gravimetric measurements of kernel weight and shell weight in diverse peanut pod varieties
1 . Both methods predicted the kernel mass with R2 > 0.93 (XRT: R2 = 0.93 and mean error estimate (MAE) = 0.17, CNN: R2 = 0.95 and MAE = 0.14). While the shell weight was predicted more accurately by CNN (R2 = 0.91, MAE = 0.09) compared to XRT (R2 = 0.78; MAE = 0.08)., Conclusion: Our study demonstrated that the X-ray based system is a relevant technology option for the estimation of key peanut produce indicators (Figure 1). The obtained results justify further research to adapt the existing X-ray system for the rapid, accurate and objective peanut procurement process. Fast and accurate estimates of produce value are a necessary pre-requisite to avoid post-harvest losses due to fungal contamination and, at the same time, allow the fair payment to farmers. Additionally, the same technology could also assist crop improvement programs in selecting and developing peanut cultivars with enhanced economic value in a high-throughput manner by skipping the shelling of the pods completely. This study demonstrated the technical feasibility of the approach and is a first step to realize a technology-driven peanut production system transformation of the future., (© 2022. The Author(s).)- Published
- 2022
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26. Understanding the Relationship between Water Availability and Biosilica Accumulation in Selected C 4 Crop Leaves: An Experimental Approach.
- Author
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D'Agostini F, Vadez V, Kholova J, Ruiz-Pérez J, Madella M, and Lancelotti C
- Abstract
Biosilica accumulation in plant tissues is related to the transpiration stream, which in turn depends on water availability. Nevertheless, the debate on whether genetically and environmentally controlled mechanisms of biosilica deposition are directly connected to water availability is still open. We aim at clarifying the system which leads to the deposition of biosilica in Sorghum bicolor , Pennisetum glaucum , and Eleusine coracana , expanding our understanding of the physiological role of silicon in crops well-adapted to arid environments, and simultaneously advancing the research in archaeological and paleoenvironmental studies. We cultivated ten traditional landraces for each crop in lysimeters, simulating irrigated and rain-fed scenarios in arid contexts. The percentage of biosilica accumulated in leaves indicates that both well-watered millet species deposited more biosilica than the water-stressed ones. By contrast, sorghum accumulated more biosilica with respect to the other two species, and biosilica accumulation was independent of the water regime. The water treatment alone did not explain either the variability of the assemblage or the differences in the biosilica accumulation. Hence, we hypothesize that genetics influence the variability substantially. These results demonstrate that biosilica accumulation differs among and within C4 species and that water availability is not the only driver in this process.
- Published
- 2022
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27. Breeding custom-designed crops for improved drought adaptation.
- Author
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Varshney RK, Barmukh R, Roorkiwal M, Qi Y, Kholova J, Tuberosa R, Reynolds MP, Tardieu F, and Siddique KHM
- Abstract
The current pace of crop improvement is inadequate to feed the burgeoning human population by 2050. Higher, more stable, and sustainable crop production is required against a backdrop of drought stress, which causes significant losses in crop yields. Tailoring crops for drought adaptation may hold the key to address these challenges and provide resilient production systems for future harvests. Understanding the genetic and molecular landscape of the functionality of alleles associated with adaptive traits will make designer crop breeding the prospective approach for crop improvement. Here, we highlight the potential of genomics technologies combined with crop physiology for high-throughput identification of the genetic architecture of key drought-adaptive traits and explore innovative genomic breeding strategies for designing future crops., Competing Interests: The authors declare no competing interests., (© 2021 The Authors. Advanced Genetics published by Wiley‐VCH GmbH.)
- Published
- 2021
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28. Maize, sorghum, and pearl millet have highly contrasting species strategies to adapt to water stress and climate change-like conditions.
- Author
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Choudhary S, Guha A, Kholova J, Pandravada A, Messina CD, Cooper M, and Vadez V
- Subjects
- Plant Transpiration, Species Specificity, Adaptation, Physiological, Climate Change, Dehydration, Pennisetum physiology, Sorghum physiology, Zea mays physiology
- Abstract
This study compared maize, sorghum and pearl-millet, leading C
4 cereals, for the transpiration rate (TR) response to increasing atmospheric and soil water stress. The TR response to transiently increasing VPD (0.9-4.1 kPa) and the transpiration and leaf area expansion response to progressive soil drying were measured in controlled conditions at early vegetative stage in 10-16 genotypes of each species grown in moderate or high vapor pressure deficit (VPD) conditions. Maize grown under moderate VPD conditions restricted TR under high VPD, but not sorghum and pearl millet. By contrast, when grown under high VPD, all species increased TR upon increasing VPD, suggesting a loss of TR responsiveness. Sorghum and pearl-millet grown under high VPD reduced leaf area, but not maize. Upon progressive soil drying, maize reduced transpiration at higher soil moisture than sorghum and pearl millet, especially under high VPD, and leaf area expansion declined at similar or lower soil moisture than transpiration in maize and sorghum. It is concluded that maize conserves water by restricting transpiration upon increasing VPD and under higher soil moisture than sorghum and millet, giving maize significantly higher TE, whereas sorghum and pearl millet rely mostly on reduced leaf area and somewhat on transpiration restriction., Competing Interests: Declaration of Competing Interest The authors declare that there are no conflicts of interest., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2020
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29. An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO 2 under climate change scenario.
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Palit P, Kudapa H, Zougmore R, Kholova J, Whitbread A, Sharma M, and Varshney RK
- Abstract
How unprecedented changes in climatic conditions will impact yield and productivity of some crops and their response to existing stresses, abiotic and biotic interactions is a key global concern. Climate change can also alter natural species' abundance and distribution or favor invasive species, which in turn can modify ecosystem dynamics and the provisioning of ecosystem services. Basic anatomical differences in C
3 and C4 plants lead to their varied responses to climate variations. In plants having a C3 pathway of photosynthesis, increased atmospheric carbon dioxide (CO2 ) positively regulates photosynthetic carbon (C) assimilation and depresses photorespiration. Legumes being C3 plants, they may be in a favorable position to increase biomass and yield through various strategies. This paper comprehensively presents recent progress made in the physiological and molecular attributes in plants with special emphasis on legumes under elevated CO2 conditions in a climate change scenario. A strategic research framework for future action integrating genomics, systems biology, physiology and crop modelling approaches to cope with changing climate is also discussed. Advances in sequencing and phenotyping methodologies make it possible to use vast genetic and genomic resources by deploying high resolution phenotyping coupled with high throughput multi-omics approaches for trait improvement. Integrated crop modelling studies focusing on farming systems design and management, prediction of climate impacts and disease forecasting may also help in planning adaptation. Hence, an integrated research framework combining genomics, plant molecular physiology, crop breeding, systems biology and integrated crop-soil-climate modelling will be very effective to cope with climate change., (© 2020 The Author(s).)- Published
- 2020
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30. Functional Dissection of the Chickpea ( Cicer arietinum L. ) Stay-Green Phenotype Associated with Molecular Variation at an Ortholog of Mendel's I Gene for Cotyledon Color: Implications for Crop Production and Carotenoid Biofortification.
- Author
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Sivasakthi K, Marques E, Kalungwana N, Carrasquilla-Garcia N, Chang PL, Bergmann EM, Bueno E, Cordeiro M, Sani SGAS, Udupa SM, Rather IA, Rouf Mir R, Vadez V, Vandemark GJ, Gaur PM, Cook DR, Boesch C, von Wettberg EJB, Kholova J, and Penmetsa RV
- Subjects
- Photosynthesis genetics, Carotenoids metabolism, Cicer genetics, Cicer growth & development, Cotyledon genetics, Cotyledon growth & development, Crop Production, Genetic Variation, Phenotype, Pigmentation genetics
- Abstract
"Stay-green" crop phenotypes have been shown to impact drought tolerance and nutritional content of several crops. We aimed to genetically describe and functionally dissect the particular stay-green phenomenon found in chickpeas with a green cotyledon color of mature dry seed and investigate its potential use for improvement of chickpea environmental adaptations and nutritional value. We examined 40 stay-green accessions and a set of 29 BC2F4-5 stay-green introgression lines using a stay-green donor parent ICC 16340 and two Indian elite cultivars (KAK2, JGK1) as recurrent parents. Genetic studies of segregating populations indicated that the green cotyledon trait is controlled by a single recessive gene that is invariantly associated with the delayed degreening (extended chlorophyll retention). We found that the chickpea ortholog of Mendel's I locus of garden pea, encoding a SGR protein as very likely to underlie the persistently green cotyledon color phenotype of chickpea. Further sequence characterization of this chickpea ortholog CaStGR1 (CaStGR1, for carietinum stay-green gene 1) revealed the presence of five different molecular variants (alleles), each of which is likely a loss-of-function of the chickpea protein (CaStGR1) involved in chlorophyll catabolism. We tested the wild type and green cotyledon lines for components of adaptations to dry environments and traits linked to agronomic performance in different experimental systems and different levels of water availability. We found that the plant processes linked to disrupted CaStGR1 gene did not functionality affect transpiration efficiency or water usage. Photosynthetic pigments in grains, including provitaminogenic carotenoids important for human nutrition, were 2-3-fold higher in the stay-green type. Agronomic performance did not appear to be correlated with the presence/absence of the stay-green allele. We conclude that allelic variation in chickpea CaStGR1 does not compromise traits linked to environmental adaptation and agronomic performance, and is a promising genetic technology for biofortification of provitaminogenic carotenoids in chickpea.
- Published
- 2019
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31. Quantitative trait loci (QTLs) for water use and crop production traits co-locate with major QTL for tolerance to water deficit in a fine-mapping population of pearl millet (Pennisetum glaucum L. R.Br.).
- Author
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Tharanya M, Kholova J, Sivasakthi K, Seghal D, Hash CT, Raj B, Srivastava RK, Baddam R, Thirunalasundari T, Yadav R, and Vadez V
- Subjects
- Chromosome Mapping, Crops, Agricultural genetics, Crops, Agricultural physiology, Droughts, Genetic Linkage, Pennisetum physiology, Phenotype, Plant Transpiration, Adaptation, Physiological genetics, Pennisetum genetics, Quantitative Trait Loci, Water physiology
- Abstract
Key Message: Four genetic regions associated with water use traits, measured at different levels of plant organization, and with agronomic traits were identified within a previously reported region for terminal water deficit adaptation on linkage group 2. Close linkages between these traits showed the value of phenotyping both for agronomic and secondary traits to better understand plant productive processes. Water saving traits are critical for water stress adaptation of pearl millet, whereas maximizing water use is key to the absence of stress. This research aimed at demonstrating the close relationship between traits measured at different levels of plant organization, some putatively involved in water stress adaptation, and those responsible for agronomic performance. A fine-mapping population of pearl millet, segregating for a previously identified quantitative trait locus (QTL) for adaptation to terminal drought stress on LG02, was phenotyped for traits at different levels of plant organization in different experimental environments (pot culture, high-throughput phenotyping platform, lysimeters, and field). The linkages among traits across the experimental systems were analysed using principal component analysis and QTL co-localization approach. Four regions within the LG02-QTL were found and revealed substantial co-mapping of water use and agronomic traits. These regions, identified across experimental systems, provided genetic evidence of the tight linkages between traits phenotyped at a lower level of plant organization and agronomic traits assessed in the field, therefore deepening our understanding of complex traits and then benefiting both geneticists and breeders. In short: (1) under no/mild stress conditions, increasing biomass and tiller production increased water use and eventually yield; (2) under severe stress conditions, water savings at vegetative stage, from lower plant vigour and fewer tillers in that population, led to more water available during grain filling, expression of stay-green phenotypes, and higher yield.
- Published
- 2018
- Full Text
- View/download PDF
32. Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.
- Author
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von Wettberg EJB, Chang PL, Başdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Shah Sani SGA, Getahun T, Vance L, Bergmann E, Lindsay D, Mamo BE, Warschefsky EJ, Dacosta-Calheiros E, Marques E, Yilmaz MA, Cakmak A, Rose J, Migneault A, Krieg CP, Saylak S, Temel H, Friesen ML, Siler E, Akhmetov Z, Ozcelik H, Kholova J, Can C, Gaur P, Yildirim M, Sharma H, Vadez V, Tesfaye K, Woldemedhin AF, Tar'an B, Aydogan A, Bukun B, Penmetsa RV, Berger J, Kahraman A, Nuzhdin SV, and Cook DR
- Subjects
- Agriculture, Cicer classification, Cicer physiology, Ecology, Environment, Genetic Variation, Genome, Plant, Genomics, Genotype, Seeds classification, Seeds genetics, Seeds physiology, Cicer genetics, Crops, Agricultural genetics
- Abstract
Domesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of environment on genetic structure and trait values, and demonstrate variation between wild and cultivated accessions for agronomic properties. A resource of genotyped, association mapping progeny functionally links the wild and cultivated gene pools and is an essential resource chickpea for improvement, while our methods inform collection of other wild crop progenitor species.
- Published
- 2018
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33. Molecular cloning and expression analysis of Aquaporin genes in pearl millet [Pennisetum glaucum (L) R. Br.] genotypes contrasting in their transpiration response to high vapour pressure deficits.
- Author
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Reddy PS, Tharanya M, Sivasakthi K, Srikanth M, Hash CT, Kholova J, Sharma KK, and Vadez V
- Subjects
- Amino Acid Sequence, Aquaporins chemistry, Aquaporins metabolism, Base Sequence, Circadian Rhythm, Cloning, Molecular, Gene Expression Profiling, Genotype, Pennisetum genetics, Phylogeny, Plant Leaves physiology, Plant Proteins chemistry, Plant Proteins metabolism, Plant Roots physiology, Sequence Alignment, Vapor Pressure, Aquaporins genetics, Pennisetum physiology, Plant Proteins genetics, Plant Transpiration
- Abstract
Pearl millet is a crop of the semi-arid tropics having high degree of genetic diversity and variable tolerance to drought stress. To investigate drought tolerance mechanism that possibly accounts for differences in drought tolerance, four recombinant inbred lines from a high resolution cross (HRC) were selected for variability in their transpiration rate (Tr) response to vapour pressure deficit (VPD) conditions. The differential Tr response of the genotypes to increased VPD conditions was used to classify the genotypes as sensitive or insensitive to high VPD. Aquaporin (AQP) genes PgPIP1;1, PgPIP1;2, PgPIP2;1, PgPIP2;3, PgPIP2;6, PgTIP1;1 and PgTIP2;2 were cloned. Phylogenetic analysis revealed that the cloned PgAQPs were evolutionarily closer to maize AQPs than to rice. PgAQP genes, including PgPIP1;1 and PgPIP2;6 in root tissue showed a significant expression pattern with higher expression in VPD-insensitive genotypes than VPD-sensitive genotypes under low VPD conditions (1.2kPa) i.e when there is no high evaporative demand from the atmosphere. PgAQP genes (PgPIP2;1 in leaf and root tissues; PgPIP1;2 and PgTIP2;2 in leaf and PgPIP2;6 in root) followed a diurnal rhythm in leaves and roots that have either higher or lower expression levels at different time intervals. Under high VPD conditions (4.21kPa), PgPIP2;3 showed higher transcript abundance in VPD-insensitive genotypes, and PgPIP2;1 in VPD-sensitive genotypes, while rest of the PgAQPs showed differential expression. Our current hypothesis is that these differences in the expression of AQP genes under different VPDs suggests a role of the AQPs in tuning the water transport pathways with variation between genotypes., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2017
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34. Transpiration efficiency: new insights into an old story.
- Author
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Vadez V, Kholova J, Medina S, Kakkera A, and Anderberg H
- Subjects
- Crops, Agricultural physiology, Plant Transpiration, Water physiology
- Abstract
Producing more food per unit of water has never been as important as it is at present, and the demand for water by economic sectors other than agriculture will necessarily put a great deal of pressure on a dwindling resource, leading to a call for increases in the productivity of water in agriculture. This topic has been given high priority in the research agenda for the last 30 years, but with the exception of a few specific cases, such as water-use-efficient wheat in Australia, breeding crops for water-use efficiency has yet to be accomplished. Here, we review the efforts to harness transpiration efficiency (TE); that is, the genetic component of water-use efficiency. As TE is difficult to measure, especially in the field, evaluations of TE have relied mostly on surrogate traits, although this has most likely resulted in over-dependence on the surrogates. A new lysimetric method for assessing TE gravimetrically throughout the entire cropping cycle has revealed high genetic variation in different cereals and legumes. Across species, water regimes, and a wide range of genotypes, this method has clearly established an absence of relationships between TE and total water use, which dismisses previous claims that high TE may lead to a lower production potential. More excitingly, a tight link has been found between these large differences in TE in several crops and attributes of plants that make them restrict water losses under high vapour-pressure deficits. This trait provides new insight into the genetics of TE, especially from the perspective of plant hydraulics, probably with close involvement of aquaporins, and opens new possibilities for achieving genetic gains via breeding focused on this trait. Last but not least, small amounts of water used in specific periods of the crop cycle, such as during grain filling, may be critical. We assessed the efficiency of water use at these critical stages., (© The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2014
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35. Water: the most important 'molecular' component of water stress tolerance research.
- Author
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Vadez V, Kholova J, Zaman-Allah M, and Belko N
- Abstract
Water deficit is the main yield-limiting factor across the Asian and African semiarid tropics and a basic consideration when developing crop cultivars for water-limited conditions is to ensure that crop water demand matches season water supply. Conventional breeding has contributed to the development of varieties that are better adapted to water stress, such as early maturing cultivars that match water supply and demand and then escape terminal water stress. However, an optimisation of this match is possible. Also, further progress in breeding varieties that cope with water stress is hampered by the typically large genotype×environment interactions in most field studies. Therefore, a more comprehensive approach is required to revitalise the development of materials that are adapted to water stress. In the past two decades, transgenic and candidate gene approaches have been proposed for improving crop productivity under water stress, but have had limited real success. The major drawback of these approaches has been their failure to consider realistic water limitations and their link to yield when designing biotechnological experiments. Although the genes are many, the plant traits contributing to crop adaptation to water limitation are few and revolve around the critical need to match water supply and demand. We focus here on the genetic aspects of this, although we acknowledge that crop management options also have a role to play. These traits are related in part to increased, better or more conservative uses of soil water. However, the traits themselves are highly dynamic during crop development: they interact with each other and with the environment. Hence, success in breeding cultivars that are more resilient under water stress requires an understanding of plant traits affecting yield under water deficit as well as an understanding of their mutual and environmental interactions. Given that the phenotypic evaluation of germplasm/breeding material is limited by the number of locations and years of testing, crop simulation modelling then becomes a powerful tool for navigating the complexity of biological systems, for predicting the effects on yield and for determining the probability of success of specific traits or trait combinations across water stress scenarios.
- Published
- 2013
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36. II.1.5 Phenotyping pearl millet for adaptation to drought.
- Author
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Vadez V, Hash T, Bidinger FR, and Kholova J
- Abstract
Pearl millet is highly resilient to some of the driest areas of the world, like the Sahel area or fringes of the Thar desert in India. Despite this, there is a wealth of variation in pearl millet genotypes for their adaptation to drought and the object of this paper was to review some related work in the past 25 years to harness these capacities toward the breeding of better adapted cultivars. Work on short duration cultivars has been a major effort. Pearl millet has also some development plasticity thanks to a high tillering ability, which allows compensating for possible drought-related failure of the main culm under intermittent drought. The development of molecular tools for breeding has made great progress in the last 10-15 years and markers, maps, EST libraries, BACs are now available and a number of quantitative trait loci (QTLs) for different traits, including drought, have been identified. Most of the work on drought has focused on the drought tolerance index (DTI), an index that reflect the genetic differences in drought adaptation that are independent of flowering time and yield potential. The DTI is closely associated to the panicle harvest index (PNHI), a trait that relates to a better grain setting and grain filling capacity. Initial work on the DTI involved empirical breeding and selection based on PNHI. A QTL for PNHI has then been identified and introgressed by marker-assisted backcrossing. More recently, a thorough dissection of that QTL has been carried out and shows that high PNHI is related to the constitutive ability of tolerant lines to save water (lower leaf conductance and sensitivity of transpiration to high vapor pressure deficit) at a vegetative stage and use it for the grain filling period. However, there is no contribution of root traits in this QTL. Current work is taking place to map these water saving traits, understand their genetic interactions, and design ideotypes having specific genetic make-up toward adaptation to specific rainfall environments.
- Published
- 2012
- Full Text
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37. Stay-green quantitative trait loci's effects on water extraction, transpiration efficiency and seed yield depend on recipient parent background.
- Author
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Vadez V, Deshpande SP, Kholova J, Hammer GL, Borrell AK, Talwar HS, and Hash CT
- Abstract
A stay-green phenotype enhances the adaptation of sorghum (Sorghum bicolor (L.) Moench) to terminal drought, although the mechanisms leading to its expression remain unclear. Differences in tillering and leaf area at anthesis, transpiration efficiency (TE), water extraction, harvest index (HI) and yield under terminal drought and fully irrigated conditions were assessed in 29 introgression lines (IL) targeting stay-green quantitative trait loci (QTLs) Stg1, Stg2, Stg3, Stg4, StgA and StgB in an S35 background, and 16 IL targeting Stg1, Stg3, Stg4 and StgB in an R16 background. TE was increased by StgB in the R16 background, whereas there was no effect in the S35 background. Water extraction was increased by Stg1 in the S35 background but not in R16. StgB modified the proportion of water extracted before and after anthesis in the S35 background. While tillering and leaf area at anthesis were decreased by Stg1 and Stg3 in S35, there was no effect in R16. Yield data under fully irrigated conditions showed higher tiller grain yield in Stg1, Stg2 and Stg3 ILs. Although yield differences were mostly explained by HI variation, the yield variation unexplained by HI was closely related to TE in S35 (R2=0.29) and R16 (R2=0.72), and was closely related to total water extracted in S35 (R2=0.41) but not in R16. These data indicate the potential for several stay-green QTLs to affect traits related to plant water use. However, these effects depend on the interaction between the genetic background and individual QTLs.
- Published
- 2011
- Full Text
- View/download PDF
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