1. Automating Stroke Data Extraction From Free-Text Radiology Reports Using Natural Language Processing: Instrument Validation Study
- Author
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Yu, Amy Y X, Liu, Zhongyu A, Pou-Prom, Chloe, Lopes, Kaitlyn, Kapral, Moira K, Aviv, Richard I, and Mamdani, Muhammad
- Subjects
Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
BackgroundDiagnostic neurovascular imaging data are important in stroke research, but obtaining these data typically requires laborious manual chart reviews. ObjectiveWe aimed to determine the accuracy of a natural language processing (NLP) approach to extract information on the presence and location of vascular occlusions as well as other stroke-related attributes based on free-text reports. MethodsFrom the full reports of 1320 consecutive computed tomography (CT), CT angiography, and CT perfusion scans of the head and neck performed at a tertiary stroke center between October 2017 and January 2019, we manually extracted data on the presence of proximal large vessel occlusion (primary outcome), as well as distal vessel occlusion, ischemia, hemorrhage, Alberta stroke program early CT score (ASPECTS), and collateral status (secondary outcomes). Reports were randomly split into training (n=921) and validation (n=399) sets, and attributes were extracted using rule-based NLP. We reported the sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and the overall accuracy of the NLP approach relative to the manually extracted data. ResultsThe overall prevalence of large vessel occlusion was 12.2%. In the training sample, the NLP approach identified this attribute with an overall accuracy of 97.3% (95.5% sensitivity, 98.1% specificity, 84.1% PPV, and 99.4% NPV). In the validation set, the overall accuracy was 95.2% (90.0% sensitivity, 97.4% specificity, 76.3% PPV, and 98.5% NPV). The accuracy of identifying distal or basilar occlusion as well as hemorrhage was also high, but there were limitations in identifying cerebral ischemia, ASPECTS, and collateral status. ConclusionsNLP may improve the efficiency of large-scale imaging data collection for stroke surveillance and research.
- Published
- 2021
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