74 results on '"Joanna L. Sharman"'
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2. SynPharm: A Guide to PHARMACOLOGY Database Tool for Designing Drug Control into Engineered Proteins
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Sam M. Ireland, Christopher Southan, Alazne Dominguez-Monedero, Simon D. Harding, Joanna L. Sharman, and Jamie A. Davies
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Chemistry ,QD1-999 - Published
- 2018
- Full Text
- View/download PDF
3. Cross-tier Web Programming for Curated Databases: a Case Study.
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Simon Fowler 0001, Simon D. Harding, Joanna L. Sharman, and James Cheney
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- 2020
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- View/download PDF
4. The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY.
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Jane F. Armstrong, Elena Faccenda, Simon D. Harding, Adam J. Pawson, Christopher Southan, Joanna L. Sharman, Brice Campo, David R. Cavanagh, Stephen P. H. Alexander, Anthony P. Davenport, Michael Spedding, Jamie A. Davies, and NC-IUPHAR
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- 2020
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- View/download PDF
5. Why data citation isn't working, and what to do about it.
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Peter Buneman, Greig Christie, Jamie A. Davies, Roza Dimitrellou, Simon D. Harding, Adam J. Pawson, Joanna L. Sharman, and Yinjun Wu
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- 2020
- Full Text
- View/download PDF
6. The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY.
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Simon D. Harding, Joanna L. Sharman, Elena Faccenda, Christopher Southan, Adam J. Pawson, Sam M. Ireland, Alasdair J. G. Gray, Liam Bruce, Stephen P. H. Alexander, Stephen Anderton, Clare Bryant, Anthony P. Davenport, Christian Doerig, Doriano Fabbro, Francesca Levi-Schaffer, Michael Spedding, Jamie A. Davies, and NC-IUPHAR
- Published
- 2018
- Full Text
- View/download PDF
7. Cross-tier Web Programming for Curated Databases: a Case Study.
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Simon Fowler 0001, Simon D. Harding, Joanna L. Sharman, and James Cheney
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- 2021
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- View/download PDF
8. Class A Orphans in GtoPdb v.2023.1
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Patrick Vanderheyden, Kalyan Tirupula, Walter G. Thomas, Laura Storjohann, Leigh Stoddart, Eliot Spindel, Michael Spedding, Joanna L. Sharman, Jean-Philippe Pin, Adam J Pawson, Richard Neubig, Chido Mpamhanga, Amy E. Monaghan, Wen Chiy Liew, Evi Kostenis, Sadashiva Karnik, Robert T. Jensen, Nick Holliday, Anthony Harmar, Satoru Eguchi, Khuraijam Dhanachandra Singh, Anthony P. Davenport, Tom I. Bonner, Richard V. Benya, Helen E. Benson, Jim Battey, and Stephen P.H. Alexander
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General Medicine ,General Chemistry - Abstract
Table 1 lists a number of putative GPCRs identified by NC-IUPHAR [161], for which preliminary evidence for an endogenous ligand has been published, or for which there exists a potential link to a disease, or disorder. These GPCRs have recently been reviewed in detail [121]. The GPCRs in Table 1 are all Class A, rhodopsin-like GPCRs. Class A orphan GPCRs not listed in Table 1 are putative GPCRs with as-yet unidentified endogenous ligands.Table 1: Class A orphan GPCRs with putative endogenous ligands GPR3GPR4GPR6GPR12GPR15GPR17GPR20 GPR22GPR26GPR31GPR34GPR35GPR37GPR39 GPR50GPR63GPR65GPR68GPR75GPR84GPR87 GPR88GPR132GPR149GPR161GPR183LGR4LGR5 LGR6MAS1MRGPRDMRGPRX1MRGPRX2P2RY10TAAR2 In addition the orphan receptors GPR18, GPR55 and GPR119 which are reported to respond to endogenous agents analogous to the endogenous cannabinoid ligands have been grouped together (GPR18, GPR55 and GPR119).
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- 2023
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- View/download PDF
9. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands.
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Christopher Southan, Joanna L. Sharman, Helen E. Benson, Elena Faccenda, Adam J. Pawson, Stephen P. H. Alexander, Oscar Peter Buneman, Anthony P. Davenport, John C. McGrath, John A. Peters, Michael Spedding, William A. Catterall, Doriano Fabbro, Jamie A. Davies, and NC-IUPHAR
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- 2016
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10. Class A Orphans in GtoPdb v.2022.3
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Patrick Vanderheyden, Kalyan Tirupula, Walter G. Thomas, Laura Storjohann, Leigh Stoddart, Eliot Spindel, Michael Spedding, Joanna L. Sharman, Jean-Philippe Pin, Adam J Pawson, Richard Neubig, Chido Mpamhanga, Amy E. Monaghan, Wen Chiy Liew, Evi Kostenis, Sadashiva Karnik, Robert T. Jensen, Nick Holliday, Anthony Harmar, Satoru Eguchi, Khuraijam Dhanachandra Singh, Anthony P. Davenport, Tom I. Bonner, Richard V. Benya, Helen E. Benson, Jim Battey, and Stephen P.H. Alexander
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General Medicine ,General Chemistry - Abstract
Table 1 lists a number of putative GPCRs identified by NC-IUPHAR [161], for which preliminary evidence for an endogenous ligand has been published, or for which there exists a potential link to a disease, or disorder. These GPCRs have recently been reviewed in detail [121]. The GPCRs in Table 1 are all Class A, rhodopsin-like GPCRs. Class A orphan GPCRs not listed in Table 1 are putative GPCRs with as-yet unidentified endogenous ligands.Table 1: Class A orphan GPCRs with putative endogenous ligands GPR3GPR4GPR6GPR12GPR15GPR17GPR20 GPR22GPR26GPR31GPR34GPR35GPR37GPR39 GPR50GPR63GPR65GPR68GPR75GPR84GPR87 GPR88GPR132GPR149GPR161GPR183LGR4LGR5 LGR6MAS1MRGPRDMRGPRX1MRGPRX2P2RY10TAAR2 In addition the orphan receptors GPR18, GPR55 and GPR119 which are reported to respond to endogenous agents analogous to the endogenous cannabinoid ligands have been grouped together (GPR18, GPR55 and GPR119).
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- 2022
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- View/download PDF
11. The IUPHAR/BPS Guide to PHARMACOLOGY: an expert-driven knowledgebase of drug targets and their ligands.
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Adam J. Pawson, Joanna L. Sharman, Helen E. Benson, Elena Faccenda, Stephen P. H. Alexander, Oscar Peter Buneman, Anthony P. Davenport, John C. McGrath, John A. Peters, Christopher Southan, Michael Spedding, Wenyuan Yu, Anthony J. Harmar, and NC-IUPHAR
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- 2014
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12. Peer-to-Peer Experimentation in Protein Structure Prediction: An Architecture, Experiment and Initial Results.
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Xueping Quan, Christopher Walton, Dietlind L. Gerloff, Joanna L. Sharman, and David Robertson 0001
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- 2006
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13. IUPHAR-DB: updated database content and new features.
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Joanna L. Sharman, Helen E. Benson, Adam J. Pawson, Veny Lukito, Chidochangu P. Mpamhanga, Vincent Bombail, Anthony P. Davenport, John A. Peters, Michael Spedding, Anthony J. Harmar, and NC-IUPHAR
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- 2013
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14. IUPHAR-DB: new receptors and tools for easy searching and visualization of pharmacological data.
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Joanna L. Sharman, Chidochangu P. Mpamhanga, Michael Spedding, Pierre Germain, Bart Staels, Catherine Dacquet, Vincent Laudet, and Anthony J. Harmar
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- 2011
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15. IUPHAR-DB: the IUPHAR database of G protein-coupled receptors and ion channels.
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Anthony J. Harmar, Rebecca A. Hills, Edward M. Rosser, Martin Jones, Oscar Peter Buneman, Donald R. Dunbar, Stuart D. Greenhill, Valerie A. Hale, Joanna L. Sharman, Tom I. Bonner, William A. Catterall, Anthony P. Davenport, Philippe Delagrange, Colin T. Dollery, Steven M. Foord, George A. Gutman, Vincent Laudet, Richard R. Neubig, Eliot H. Ohlstein, Richard W. Olsen, John A. Peters, Jean-Philippe Pin, Robert R. Ruffolo, David B. Searls, Mathew W. Wright, and Michael Spedding
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- 2009
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16. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
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Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, åke Västermark, and Gerrit Vriend
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- 2015
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17. MaGnET: Malaria Genome Exploration Tool.
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Joanna L. Sharman and Dietlind L. Gerloff
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- 2013
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18. Class A Orphans in GtoPdb v.2021.3
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Wen Chiy Liew, Kalyan C. Tirupula, Satoru Eguchi, Richard R. Neubig, Nick Holliday, Jean-Philippe Pin, Anthony P. Davenport, Walter G. Thomas, Amy E. Monaghan, Richard V. Benya, Leigh A. Stoddart, Adam J Pawson, Evi Kostenis, Stephen P.H. Alexander, Patrick Vanderheyden, Khuraijam Dhanachandra Singh, Anthony J. Harmar, Robert T. Jensen, Joanna L. Sharman, Tom I. Bonner, Eliot R. Spindel, Laura Storjohann, Sadashiva S. Karnik, Michael Spedding, J F Battey, Chidochangu P. Mpamhanga, and Helen E. Benson
- Subjects
GPR55 ,GPR18 ,Computational biology ,Endogenous cannabinoid ,Biology ,hormones, hormone substitutes, and hormone antagonists ,G protein-coupled receptor - Abstract
Table 1 lists a number of putative GPCRs identified by NC-IUPHAR [161], for which preliminary evidence for an endogenous ligand has been published, or for which there exists a potential link to a disease, or disorder. These GPCRs have recently been reviewed in detail [121]. The GPCRs in Table 1 are all Class A, rhodopsin-like GPCRs. Class A orphan GPCRs not listed in Table 1 are putative GPCRs with as-yet unidentified endogenous ligands.Table 1: Class A orphan GPCRs with putative endogenous ligands GPR3GPR4GPR6GPR12GPR15GPR17GPR20 GPR22GPR26GPR31GPR34GPR35GPR37GPR39 GPR50GPR63GRP65GPR68GPR75GPR84GPR87 GPR88GPR132GPR149GPR161GPR183LGR4LGR5 LGR6MAS1MRGPRDMRGPRX1MRGPRX2P2RY10TAAR2 In addition the orphan receptors GPR18, GPR55 and GPR119 which are reported to respond to endogenous agents analogous to the endogenous cannabinoid ligands have been grouped together (GPR18, GPR55 and GPR119).
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- 2021
- Full Text
- View/download PDF
19. Why data citation isn't working, and what to do about it
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Joanna L Sharman, Greig Christie, Simon D. Harding, Peter Buneman, Yinjun Wu, Adam J. Pawson, Jamie A. Davies, and Roza Dimitrellou
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Databases, Factual ,Abstracting and Indexing ,Process (engineering) ,Computer science ,MEDLINE ,02 engineering and technology ,General Biochemistry, Genetics and Molecular Biology ,Data citation ,03 medical and health sciences ,020204 information systems ,0202 electrical engineering, electronic engineering, information engineering ,Humans ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,030304 developmental biology ,0303 health sciences ,Information retrieval ,Agricultural and Biological Sciences(all) ,Biochemistry, Genetics and Molecular Biology(all) ,Publications ,Original Article ,General Agricultural and Biological Sciences ,Citation ,Information Systems - Abstract
We describe a system that automatically generates from a curated database a collection of short conventional publications—citation summaries—that describe the contents of various components of the database. The purpose of these summaries is to ensure that the contributors to the database receive appropriate credit through the currently used measures such as h-indexes. Moreover, these summaries also serve to give credit to publications and people that are cited by the database. In doing this, we need to deal with granularity—how many summaries should be generated to represent effectively the contributions to a database? We also need to deal with evolution—for how long can a given summary serve as an appropriate reference when the database is evolving? We describe a journal specifically tailored to contain these citation summaries. We also briefly discuss the limitations that the current mechanisms for recording citations place on both the process and value of data citation.
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- 2020
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20. Challenges of Connecting Chemistry to Pharmacology: Perspectives from Curating the IUPHAR/BPS Guide to PHARMACOLOGY
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Elena Faccenda, Jamie A. Davies, Christopher Southan, Adam J. Pawson, Joanna L. Sharman, and Simon D. Harding
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0301 basic medicine ,Clinical pharmacology ,Process (engineering) ,Computer science ,General Chemical Engineering ,media_common.quotation_subject ,MEDLINE ,General Chemistry ,Ambiguity ,Pharmacology ,law.invention ,Identifier ,lcsh:Chemistry ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,lcsh:QD1-999 ,law ,Perspective ,Selection (linguistics) ,Relevance (information retrieval) ,Quality (business) ,030217 neurology & neurosurgery ,media_common - Abstract
Connecting chemistry to pharmacology has been an objective of Guide to PHARMACOLOGY (GtoPdb) and its precursor the International Union of Basic and Clinical Pharmacology Database (IUPHAR-DB) since 2003. This has been achieved by populating our database with expert-curated relationships between documents, assays, quantitative results, chemical structures, their locations within the documents, and the protein targets in the assays (D-A-R-C-P). A wide range of challenges associated with this are described in this perspective, using illustrative examples from GtoPdb entries. Our selection process begins with judgments of pharmacological relevance and scientific quality. Even though we have a stringent focus for our small-data extraction, we note that assessing the quality of papers has become more difficult over the last 15 years. We discuss ambiguity issues with the resolution of authors' descriptions of A-R-C-P entities to standardized identifiers. We also describe developments that have made this somewhat easier over the same period both in the publication ecosystem and recent enhancements of our internal processes. This perspective concludes with a look at challenges for the future, including the wider capture of mechanistic nuances and possible impacts of text mining on automated entity extraction.
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- 2018
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21. The International Union of Basic and Clinical Pharmacology Committee on Receptor Nomenclature and Drug Classification (NC-IUPHAR): Relevance to pharmacology today and challenges for the future
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Michael Spedding, Jamie A. Davies, Arthur Christopoulos, Stephen P.H. Alexander, Adam J Pawson, Anthony P. Davenport, Doriano Fabbro, and Joanna L. Sharman
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Clinical pharmacology ,business.industry ,law ,Applied Mathematics ,General Mathematics ,Drug classification ,Medicine ,Engineering ethics ,Relevance (information retrieval) ,business ,Receptor ,Nomenclature ,law.invention - Published
- 2018
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- View/download PDF
22. The IUPHAR/BPS Guide to PHARMACOLOGY database (GtoPdb) in 2018: new features and updates
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Joanna L. Sharman, Elena Faccenda, Jane F. Armstrong, Anthony P. Davenport, Adam J Pawson, Michael Spedding, Jamie A. Davies, Stephen P.H. Alexander, Christopher Southan, and Simon D. Harding
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Information retrieval ,Computer science ,Applied Mathematics ,General Mathematics - Published
- 2018
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- View/download PDF
23. The big data join in pharmacology: linking structures, databases and documents
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Joanna L. Sharman, Elena Faccenda, Simon D. Harding, Adam J Pawson, Christopher Southan, and Jamie A. Davies
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World Wide Web ,business.industry ,Computer science ,Applied Mathematics ,General Mathematics ,Big data ,Join (sigma algebra) ,business - Published
- 2018
- Full Text
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24. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Other ion channels
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John A. Peters, Neil V. Marrion, Christopher Southan, Stephen P.H. Alexander, Jamie A. Davies, Adam J. Pawson, Joanna L. Sharman, Elena Faccenda, Simon D. Harding, and Eamonn Kelly
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0301 basic medicine ,Pharmacology ,03 medical and health sciences ,030104 developmental biology ,Clinical pharmacology ,Nomenclature Committee ,law ,Summary information ,Computer science ,Catalytic receptors ,Ion channel ,law.invention - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13881/full. Other ion channels are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, voltage-gated ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
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- 2017
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- View/download PDF
25. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Ligand-gated ion channels
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Stephen P.H. Alexander, Simon D. Harding, Neil V. Marrion, Christopher Southan, John A. Peters, Elena Faccenda, Adam J. Pawson, Eamonn Kelly, Jamie A. Davies, and Joanna L. Sharman
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0301 basic medicine ,Pharmacology ,Clinical pharmacology ,Nomenclature Committee ,Computer science ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Summary information ,law ,Ligand-gated ion channel ,Catalytic receptors ,030217 neurology & neurosurgery - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13879/full. Ligand-gated ion channels are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
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- 2017
- Full Text
- View/download PDF
26. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Voltage-gated ion channels
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Eamonn Kelly, Adam J. Pawson, Christopher Southan, Jörg Striessnig, John A. Peters, Neil V. Marrion, Jamie A. Davies, Elena Faccenda, Simon D. Harding, Stephen P.H. Alexander, and Joanna L. Sharman
- Subjects
0301 basic medicine ,Pharmacology ,Clinical pharmacology ,Voltage-gated ion channel ,Computer science ,Nomenclature Committee ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Summary information ,law ,Catalytic receptors ,030217 neurology & neurosurgery - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13884/full. Voltage-gated ion channels are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
- Published
- 2017
- Full Text
- View/download PDF
27. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Transporters
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Joanna L. Sharman, Adam J. Pawson, Christopher Southan, Neil V. Marrion, Jamie A. Davies, John A. Peters, Elena Faccenda, Stephen P.H. Alexander, Eamonn Kelly, and Simon D. Harding
- Subjects
0301 basic medicine ,Pharmacology ,Clinical pharmacology ,business.industry ,Nomenclature Committee ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,law ,Summary information ,Medicine ,Catalytic receptors ,business ,030217 neurology & neurosurgery - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13883/full. Transporters are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors and enzymes. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
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- 2017
- Full Text
- View/download PDF
28. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Catalytic receptors
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Jamie A. Davies, Simon D. Harding, Eamonn Kelly, Elena Faccenda, John A. Peters, Doriano Fabbro, Joanna L. Sharman, Stephen P.H. Alexander, Adam J. Pawson, Neil V. Marrion, and Christopher Southan
- Subjects
0301 basic medicine ,Pharmacology ,Clinical pharmacology ,Nomenclature Committee ,Computer science ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Summary information ,law ,Catalytic receptors ,030217 neurology & neurosurgery - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13876/full. Catalytic receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
- Published
- 2017
- Full Text
- View/download PDF
29. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Nuclear hormone receptors
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Christopher Southan, Joanna L. Sharman, Adam J. Pawson, Stephen P.H. Alexander, John A. Cidlowski, Jamie A. Davies, Simon D. Harding, John A. Peters, Neil V. Marrion, Elena Faccenda, and Eamonn Kelly
- Subjects
0301 basic medicine ,Pharmacology ,Clinical pharmacology ,Nomenclature Committee ,business.industry ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,law ,Summary information ,Medicine ,Catalytic receptors ,business ,030217 neurology & neurosurgery - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13880/full. Nuclear hormone receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, voltage-gated ion channels, other ion channels, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate. © 2015 The British Pharmacological Society.
- Published
- 2017
- Full Text
- View/download PDF
30. Class A Orphans (version 2019.5) in the IUPHAR/BPS Guide to Pharmacology Database
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J F Battey, Sadashiva S. Karnik, Robert T. Jensen, Chidochangu P. Mpamhanga, Wen Chiy Liew, Tom I. Bonner, Laura Storjohann, Eliot R. Spindel, Jean-Philippe Pin, Amy E. Monaghan, Anthony P. Davenport, Stephen P.H. Alexander, Walter G. Thomas, Patrick Vanderheyden, Leigh A. Stoddart, Evi Kostenis, Kalyan C. Tirupula, Anthony J. Harmar, Richard V. Benya, Joanna L. Sharman, Michael Spedding, Satoru Eguchi, Richard R. Neubig, Nick Holliday, Adam J Pawson, and Helen E. Benson
- Subjects
GPR55 ,GPR18 ,Endogenous cannabinoid ,Computational biology ,Biology ,hormones, hormone substitutes, and hormone antagonists ,G protein-coupled receptor - Abstract
Table 1 lists a number of putative GPCRs identified by NC-IUPHAR [194], for which preliminary evidence for an endogenous ligand has been published, or for which there exists a potential link to a disease, or disorder. These GPCRs have recently been reviewed in detail [150]. The GPCRs in Table 1 are all Class A, rhodopsin-like GPCRs. Class A orphan GPCRs not listed in Table 1 are putative GPCRs with as-yet unidentified endogenous ligands.Table 1: Class A orphan GPCRs with putative endogenous ligands GPR3GPR4GPR6GPR12GPR15GPR17GPR20 GPR22GPR26GPR31GPR34GPR35GPR37GPR39 GPR50GPR63GRP65GPR68GPR75GPR84GPR87 GPR88GPR132GPR149GPR161GPR183LGR4LGR5 LGR6MAS1MRGPRDMRGPRX1MRGPRX2P2RY10TAAR2 In addition the orphan receptors GPR18, GPR55 and GPR119 which are reported to respond to endogenous agents analogous to the endogenous cannabinoid ligands have been grouped together (GPR18, GPR55 and GPR119).
- Published
- 2019
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31. The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY
- Author
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Nc-Iuphar, David R. Cavanagh, Michael Spedding, Adam J. Pawson, Jamie A. Davies, Anthony P. Davenport, Jane F. Armstrong, Elena Faccenda, Christopher Southan, Simon D. Harding, Joanna L. Sharman, Brice Campo, and Stephen P.H. Alexander
- Subjects
Plasmodium ,Databases, Factual ,Databases, Pharmaceutical ,Web Browser ,Pharmacology ,Biology ,Ligands ,Antimalarials ,User-Computer Interface ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,Genetics ,medicine ,Database Issue ,Humans ,Molecular Targeted Therapy ,030304 developmental biology ,0303 health sciences ,Web browser ,Molecular interactions ,Drug discovery ,medicine.disease ,Immunopharmacology ,Malaria ,3. Good health ,Molecular targets ,Software ,030217 neurology & neurosurgery - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY (www.guidetopharmacology.org) is an open-access, expert-curated database of molecular interactions between ligands and their targets. We describe significant updates made over the seven releases during the last two years. The database is notably enhanced through the continued linking of relevant pharmacology with key immunological data types as part of the IUPHAR Guide to IMMUNOPHARMACOLOGY (www.guidetoimmunopharmacology.org) and by a major new extension, the IUPHAR/MMV Guide to Malaria PHARMACOLOGY (www.guidetomalariapharmacology.org). The latter has been constructed in partnership with the Medicines for Malaria Venture, an organization dedicated to identifying, developing and delivering new antimalarial therapies that are both effective and affordable. This is in response to the global challenge of over 200 million cases of malaria and 400 000 deaths worldwide, with the majority in the WHO Africa Region. It provides new pharmacological content, including molecular targets in the malaria parasite, interaction data for ligands with antimalarial activity, and establishes curation of data from screening assays, used routinely in antimalarial drug discovery, against the whole organism. A dedicated portal has been developed to provide quick and focused access to these new data.
- Published
- 2019
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32. Class A Orphans (version 2019.4) in the IUPHAR/BPS Guide to Pharmacology Database
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Michael Spedding, Joanna L. Sharman, Anthony J. Harmar, Chidochangu P. Mpamhanga, Wen Chiy Liew, Jean-Philippe Pin, Walter G. Thomas, Kalyan C. Tirupula, Anthony P. Davenport, Adam J Pawson, Eliot R. Spindel, Leigh A. Stoddart, Evi Kostenis, Richard V. Benya, Patrick Vanderheyden, Tom I. Bonner, Laura Storjohann, Satoru Eguchi, Robert T. Jensen, Richard R. Neubig, Nick Holliday, Stephen P.H. Alexander, Sadashiva S. Karnik, Amy E. Monaghan, J F Battey, and Helen E. Benson
- Subjects
Information retrieval ,Biology ,hormones, hormone substitutes, and hormone antagonists - Abstract
Table 1 lists a number of putative GPCRs identified by NC-IUPHAR [191], for which preliminary evidence for an endogenous ligand has been published, or for which there exists a potential link to a disease, or disorder. These GPCRs have recently been reviewed in detail [148]. The GPCRs in Table 1 are all Class A, rhodopsin-like GPCRs. Class A orphan GPCRs not listed in Table 1 are putative GPCRs with as-yet unidentified endogenous ligands.Table 1: Class A orphan GPCRs with putative endogenous ligands GPR3GPR4GPR6GPR12GPR15GPR17GPR20 GPR22GPR26GPR31GPR34GPR35GPR37GPR39 GPR50GPR63GRP65GPR68GPR75GPR84GPR87 GPR88GPR132GPR149GPR161GPR183LGR4LGR5 LGR6MAS1MRGPRDMRGPRX1MRGPRX2P2RY10TAAR2 In addition the orphan receptors GPR18, GPR55 and GPR119 which are reported to respond to endogenous agents analogous to the endogenous cannabinoid ligands have been grouped together (GPR18, GPR55 and GPR119).
- Published
- 2019
- Full Text
- View/download PDF
33. Inverse pharmacology: Approaches and tools for introducing druggability into engineered proteins
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Joanna L. Sharman, Christopher Southan, Sam M. Ireland, Jamie A. Davies, Alazne Dominguez-Monedero, and Simon D. Harding
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0106 biological sciences ,Computer science ,Druggability ,Bioengineering ,Context (language use) ,Pharmacology ,Protein Engineering ,01 natural sciences ,Applied Microbiology and Biotechnology ,Article ,03 medical and health sciences ,Synthetic biology ,Genome editing ,Bacterial Proteins ,Cpf1 ,010608 biotechnology ,CRISPR ,Humans ,030304 developmental biology ,Gene Editing ,0303 health sciences ,Structure-function ,Effector ,Protein engineering ,Endonucleases ,Small molecule ,3. Good health ,Pharmaceutical ,CRISPR-Cas Systems ,Drug ,Biotechnology - Abstract
A major feature of twenty-first century medical research is the development of therapeutic strategies that use 'biologics' (large molecules, usually engineered proteins) and living cells instead of, or as well as, the small molecules that were the basis of pharmacology in earlier eras. The high power of these techniques can bring correspondingly high risk, and therefore the need for the potential for external control. One way of exerting control on therapeutic proteins is to make them responsive to small molecules; in a clinical context, these small molecules themselves have to be safe. Conventional pharmacology has resulted in thousands of small molecules licensed for use in humans, and detailed structural data on their binding to their protein targets. In principle, these data can be used to facilitate the engineering of drug-responsive modules, taken from natural proteins, into synthetic proteins. This has been done for some years (for example, Cre-ERT2) but usually in a painstaking manner. Recently, we have developed the bioinformatic tool SynPharm to facilitate the design of drug-responsive proteins. In this review, we outline the history of the field, the design and use of the Synpharm tool, and describe our own experiences in engineering druggability into the Cpf1 effector of CRISPR gene editing.
- Published
- 2019
34. Accessing Expert-Curated Pharmacological Data in the IUPHAR/BPS Guide to PHARMACOLOGY
- Author
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Joanna L, Sharman, Simon D, Harding, Christopher, Southan, Elena, Faccenda, Adam J, Pawson, and Jamie A, Davies
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Pharmacology ,Internet ,Gene Ontology ,Pharmaceutical Preparations ,Humans ,Receptors, Serotonin, 5-HT3 ,Databases, Protein ,Ligands ,Data Curation ,Databases, Chemical - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY is an expert-curated, open-access database of information on drug targets and the substances that act on them. This unit describes the procedures for searching and downloading ligand-target binding data and for finding detailed annotations and the most relevant literature. The database includes concise overviews of the properties of 1,700 data-supported human drug targets and related proteins, divided into families, and 9,000 small molecule and peptide experimental ligands and approved drugs that bind to those targets. More detailed descriptions of pharmacology, function, and pathophysiology are provided for a subset of important targets. The information is reviewed regularly by expert subcommittees of the IUPHAR Committee on Receptor Nomenclature and Drug Classification. A new immunopharmacology portal has recently been added, drawing together data on immunological targets, ligands, cell types, processes and diseases. The data are available for download and can be accessed computationally via Web services. © 2018 by John WileySons, Inc.
- Published
- 2018
35. Accessing expert-curated pharmacological data in the IUPHAR/BPS Guide to PHARMACOLOGY:Guide to PHARMACOLOGY and Guide to IMMUNOPHARMACOLOGY
- Author
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Joanna L. Sharman, Simon D. Harding, Christopher Southan, Adam J. Pawson, Jamie A. Davies, Elena Faccenda, and Nc-Iuphar
- Subjects
0301 basic medicine ,Computer science ,Drug target ,Drug classification ,General Medicine ,Pharmacology ,computer.software_genre ,Immunopharmacology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Web service ,computer ,030217 neurology & neurosurgery - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY is an expert-curated, open-access database of information on drug targets and the substances that act on them. This unit describes the procedures for searching and downloading ligand-target binding data and for finding detailed annotations and the most relevant literature. The database includes concise overviews of the properties of 1,700 data-supported human drug targets and related proteins, divided into families, and 9,000 small molecule and peptide experimental ligands and approved drugs that bind to those targets. More detailed descriptions of pharmacology, function, and pathophysiology are provided for a subset of important targets. The information is reviewed regularly by expert subcommittees of the IUPHAR Committee on Receptor Nomenclature and Drug Classification. A new immunopharmacology portal has recently been added, drawing together data on immunological targets, ligands, cell types, processes and diseases. The data are available for download and can be accessed computationally via Web services. © 2018 by John Wiley & Sons, Inc.
- Published
- 2018
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- View/download PDF
36. An open-access tool for designing drug control into engineered proteins
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Sam M Ireland, Christopher Southan, Alazane Dominguez-Monedero, Simon D. Harding, Joanna L. Sharman, and Jamie A. Davies
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chemistry.chemical_compound ,Synthetic biology ,chemistry ,Drug discovery ,Druggability ,Protein Data Bank (RCSB PDB) ,TetR ,Computational biology ,Biology ,Transcription (software) ,Control (linguistics) ,Small molecule - Abstract
A major challenge in synthetic biology, particularly for mammalian systems, is inclusion of adequate external control for the synthetic system activities. Control at the transcriptional level can be achieved by adaptation of bacterial repressor-operator systems (e.g. TetR), but altering the activity of a protein by controlling transcription is indirect and for longer half-life mRNAs, decreasing activity this way can be inconveniently slow. Where possible, direct modulation of protein activity by soluble ligands has many advantages, including rapid action. Decades of drug discovery and pharmacological research have uncovered detailed information on the interactions between large numbers of small molecules and their primary protein targets (as well as off-target secondary interactions), many of which have been well studied in mammals, including humans. In principle, this accumulated knowledge would be a powerful resource for synthetic biology. Here we present SynPharm, a tool that draws together information from the pharmacological database GtoPdb and the structural database, PDB, to help synthetic biologists identify ligand-binding domains of natural proteins. Consequently, as sequence cassettes, these may be suitable for building into engineered proteins to confer small molecule modulation on them. The tool has ancillary utilities which include; assessing contact changes between different ligands in the same protein, predicting possible effects of genetic variants on binding residues and insights into ligand cross-reactivity between species.
- Published
- 2018
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- View/download PDF
37. MaGnET: a software tool for integrated visualisation of functional genomic data relating to the malaria parasite.
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Joanna L. Sharman and Dietlind L. Gerloff
- Published
- 2007
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38. BJP is linking its articles to the IUPHAR/BPS Guide to PHARMACOLOGY
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Stephen P.H. Alexander, Joanna L. Sharman, John C. McGrath, and Adam J. Pawson
- Subjects
Pharmacology ,Political science ,Transparency (behavior) - Abstract
Linked Editorials This Editorial is part of a series. To view the other Editorials in this series, visit: http://onlinelibrary.wiley.com/doi/10.1111/bph.12956/abstract; http://onlinelibrary.wiley.com/doi/10.1111/bph.12954/abstract; http://onlinelibrary.wiley.com/doi/10.1111/bph.12955/abstract and http://onlinelibrary.wiley.com/doi/10.1111/bph.12856/abstract. Video To view the video on the IUPHAR/BPS Guide to PHARMACOLOGY, visit: https://www.youtube.com/watch?v=Qhy3q33VtRI
- Published
- 2015
- Full Text
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39. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18:Enzymes
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Stephen P.H. Alexander, Adam J. Pawson, Christopher Southan, Neil V. Marrion, John A. Peters, Simon D. Harding, Joanna L. Sharman, Jamie A. Davies, Elena Faccenda, Eamonn Kelly, and Doriano Fabbro
- Subjects
0301 basic medicine ,Pharmacology ,Clinical pharmacology ,Databases, Pharmaceutical ,Nomenclature Committee ,business.industry ,Knowledge Bases ,The Concise Guide to Pharmacology 2017/18 ,Ligands ,Enzymes ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Summary information ,law ,Journal Article ,Animals ,Humans ,Medicine ,Catalytic receptors ,business ,030217 neurology & neurosurgery - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13877/full. Enzymes are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
- Published
- 2017
- Full Text
- View/download PDF
40. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Catalytic receptors
- Author
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Stephen Ph, Alexander, Doriano, Fabbro, Eamonn, Kelly, Neil V, Marrion, John A, Peters, Elena, Faccenda, Simon D, Harding, Adam J, Pawson, Joanna L, Sharman, Christopher, Southan, and Jamie A, Davies
- Subjects
Databases, Pharmaceutical ,Knowledge Bases ,The Concise Guide to Pharmacology 2017/18 ,Animals ,Humans ,Receptors, Cell Surface ,Ligands - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point‐in‐time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13876/full. Catalytic receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein‐coupled receptors, ligand‐gated ion channels, voltage‐gated ion channels, other ion channels, nuclear hormone receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid‐2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC‐IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
- Published
- 2017
41. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Nuclear hormone receptors
- Author
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Stephen Ph, Alexander, John A, Cidlowski, Eamonn, Kelly, Neil V, Marrion, John A, Peters, Elena, Faccenda, Simon D, Harding, Adam J, Pawson, Joanna L, Sharman, Christopher, Southan, and Jamie A, Davies
- Subjects
Databases, Pharmaceutical ,Knowledge Bases ,The Concise Guide to Pharmacology 2017/18 ,Animals ,Humans ,Receptors, Cytoplasmic and Nuclear ,Ligands - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13880/full. Nuclear hormone receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ligand-gated ion channels, voltage-gated ion channels, other ion channels, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate. © 2015 The British Pharmacological Society.
- Published
- 2017
42. THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Voltage-gated ion channels
- Author
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Stephen Ph, Alexander, Jörg, Striessnig, Eamonn, Kelly, Neil V, Marrion, John A, Peters, Elena, Faccenda, Simon D, Harding, Adam J, Pawson, Joanna L, Sharman, Christopher, Southan, and Jamie A, Davies
- Subjects
Databases, Pharmaceutical ,Knowledge Bases ,The Concise Guide to Pharmacology 2017/18 ,Animals ,Humans ,Ligands ,Ion Channels - Abstract
The Concise Guide to PHARMACOLOGY 2017/18 provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point‐in‐time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.13884/full. Voltage‐gated ion channels are one of the eight major pharmacological targets into which the Guide is divided, with the others being: G protein‐coupled receptors, ligand‐gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid‐2017, and supersedes data presented in the 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature Committee of the Union of Basic and Clinical Pharmacology (NC‐IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
- Published
- 2017
43. The Concise Guide to PHARMACOLOGY 2013/14: Enzymes
- Author
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Helen E. Benson, Michael Spedding, Stephen P.H. Alexander, Elena Faccenda, John A. Peters, Adam J. Pawson, Joanna L. Sharman, and Anthony J. Harmar
- Subjects
Pharmacology ,chemistry.chemical_classification ,0303 health sciences ,03 medical and health sciences ,0302 clinical medicine ,Enzyme ,chemistry ,business.industry ,Medicine ,business ,030217 neurology & neurosurgery ,030304 developmental biology - Published
- 2013
- Full Text
- View/download PDF
44. The Concise Guide to PHARMACOLOGY 2013/14: Nuclear Hormone Receptors
- Author
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Joanna L. Sharman, Stephen P.H. Alexander, Michael Spedding, Helen E. Benson, John A. Peters, Adam J. Pawson, Elena Faccenda, and Anthony J. Harmar
- Subjects
Pharmacology ,0303 health sciences ,03 medical and health sciences ,0302 clinical medicine ,Nuclear receptor ,business.industry ,030220 oncology & carcinogenesis ,Medicine ,business ,030304 developmental biology - Published
- 2013
- Full Text
- View/download PDF
45. The Concise Guide to PHARMACOLOGY 2013/14: G Protein-Coupled Receptors
- Author
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Joanna L. Sharman, Stephen P.H. Alexander, John A. Peters, Helen E. Benson, Anthony J. Harmar, Elena Faccenda, Michael Spedding, and Adam J. Pawson
- Subjects
Pharmacology ,business.industry ,Medicine ,business ,Receptor ,G protein-coupled receptor - Published
- 2013
- Full Text
- View/download PDF
46. The Concise Guide to PHARMACOLOGY 2013/14: Ion Channels
- Author
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Elena Faccenda, Helen E. Benson, Stephen P.H. Alexander, William A. Catterall, John A. Peters, Anthony J. Harmar, Michael Spedding, Joanna L. Sharman, and Adam J. Pawson
- Subjects
Pharmacology ,Epithelial sodium channel ,0303 health sciences ,Homology (biology) ,3. Good health ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,chemistry ,Phosphorylation ,Phosphatidylinositol ,030217 neurology & neurosurgery ,Ion channel ,030304 developmental biology - Abstract
Class II PI3Ks (EC 2.7.1.154) phosphorylate phosphatidylinositol to generate phosphatidylinositol 3-phosphate (and possibly phosphatidylinositol 4-phosphate to generate phosphatidylinositol 3,4-bisphosphate). Three monomeric members exist, PI3K-C2α, β and γ, and include Ras-binding, Phox homology and two C2domains.
- Published
- 2013
- Full Text
- View/download PDF
47. The Concise Guide to PHARMACOLOGY 2013/14: Catalytic Receptors
- Author
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Adam J. Pawson, Michael Spedding, Elena Faccenda, Helen E. Benson, Joanna L. Sharman, John A. Peters, Stephen P.H. Alexander, and Anthony J. Harmar
- Subjects
Pharmacology ,0303 health sciences ,03 medical and health sciences ,0302 clinical medicine ,Chemistry ,030204 cardiovascular system & hematology ,Catalytic receptors ,Receptor ,Small molecule ,030304 developmental biology ,Biological evaluation - Published
- 2013
- Full Text
- View/download PDF
48. The Concise Guide to PHARMACOLOGY 2013/14: Transporters
- Author
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Anthony J. Harmar, Helen E. Benson, Stephen P.H. Alexander, John A. Peters, Adam J. Pawson, Joanna L. Sharman, Elena Faccenda, and Michael Spedding
- Subjects
Pharmacology ,0303 health sciences ,biology ,business.industry ,Membrane transport protein ,Transporter ,03 medical and health sciences ,0302 clinical medicine ,biology.protein ,Medicine ,business ,030217 neurology & neurosurgery ,030304 developmental biology - Published
- 2013
- Full Text
- View/download PDF
49. The IUPHAR/BPS Guide to PHARMACOLOGY: an expert-driven knowledgebase of drug targets and their ligands
- Author
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Joanna L. Sharman, John A. Peters, Wenyuan Yu, Nc-Iuphar, Anthony P. Davenport, John C. McGrath, Stephen P.H. Alexander, Anthony J. Harmar, Christopher Southan, Michael Spedding, Elena Faccenda, Helen E. Benson, Adam J. Pawson, and Peter Buneman
- Subjects
Internet ,Clinical pharmacology ,Drug discovery ,Knowledge Bases ,Proteins ,Biology ,Pharmacology ,Ligands ,chEMBL ,Compendium ,3. Good health ,law.invention ,VI. Genomic variation, diseases and drugs ,Pharmaceutical Preparations ,law ,Drug Discovery ,Genetics ,Ensembl ,UniProt ,DrugBank ,Databases, Chemical ,PubChem - Abstract
The International Union of Basic and Clinical Pharmacology/British Pharmacological Society (IUPHAR/BPS) Guide to PHARMACOLOGY (http://www.guidetopharmacology.org) is a new open access resource providing pharmacological, chemical, genetic, functional and pathophysiological data on the targets of approved and experimental drugs. Created under the auspices of the IUPHAR and the BPS, the portal provides concise, peer-reviewed overviews of the key properties of a wide range of established and potential drug targets, with in-depth information for a subset of important targets. The resource is the result of curation and integration of data from the IUPHAR Database (IUPHAR-DB) and the published BPS 'Guide to Receptors and Channels' (GRAC) compendium. The data are derived from a global network of expert contributors, and the information is extensively linked to relevant databases, including ChEMBL, DrugBank, Ensembl, PubChem, UniProt and PubMed. Each of the approximately 6000 small molecule and peptide ligands is annotated with manually curated 2D chemical structures or amino acid sequences, nomenclature and database links. Future expansion of the resource will complete the coverage of all the targets of currently approved drugs and future candidate targets, alongside educational resources to guide scientists and students in pharmacological principles and techniques
- Published
- 2013
- Full Text
- View/download PDF
50. The Guide to PHARMACOLOGY portal: A one-stop pharmacology shop
- Author
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Adam J. Pawson, Joanna L. Sharman, Anthony J. Harmar, Helen E. Benson, Michael Spedding, and Elena Faccenda
- Subjects
Engineering ,medicine.medical_specialty ,business.industry ,medicine ,Medical physics ,business ,General Biochemistry, Genetics and Molecular Biology - Abstract
Most medicines are chemical substances that work by interacting with specific target proteins in the body. The International Union of Basic and Clinical Pharmacology (IUPHAR) and the British Pharmacological Society (BPS) have joined forces to develop the Guide to PHARMACOLOGY (www.guidetopharmacology.org), a portal to information on the targets of licensed drugs and other targets of current research interest, such as those linked to human disease. Over the next 3 years, with support from the Wellcome Trust, IUPHAR and BPS, the Guide to PHARMACOLOGY portal will be expanded to cover all the targets of current licensed drugs and those with potential to be targets of future therapeutics. Our goal is to provide scientists, doctors, allied professions and the general public with a ‘one-stop shop’ source of information on how drugs work, and to help researchers to design experiments using the appropriate reagents.
- Published
- 2013
- Full Text
- View/download PDF
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