15 results on '"Iurii Chubak"'
Search Results
2. Colloidal gelation induced by ring polymers
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Esmaeel Moghimi, Iurii Chubak, Maria Kaliva, Parvin Kiany, Taihyun Chang, Junyoung Ahn, Nikolaos Patelis, Georgios Sakellariou, Sergei A. Egorov, Dimitris Vlassopoulos, and Christos N. Likos
- Subjects
Physics ,QC1-999 - Abstract
We provide unambiguous experimental evidence that ring polymers are stronger depleting agents in colloidal suspensions than their linear counterparts. We use an intermediate volume fraction (ϕ_{c}=0.44) colloidal gel based on the classic poly(methyl methacrylate) (PMMA) hard spheres, in which the polystyrene depletant is either linear or ring of the same molar mass or the same size. We systematically increase the depletant concentration from zero (no attraction) to well above the gelation point and find that in the presence of rings, gels are formed at smaller concentrations and possess a larger storage modulus in comparison to those induced by the linear chains. Consequently, the yield stress is enhanced; however, the yield strain (gel deformability) remains concomitantly unaffected. Our experimental findings are in agreement with theoretical calculations based on effective interaction potentials. Hence, polymer architecture is a powerful entropic tool to tailor the strength of colloidal gels.
- Published
- 2024
- Full Text
- View/download PDF
3. Active topological glass
- Author
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Jan Smrek, Iurii Chubak, Christos N. Likos, and Kurt Kremer
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Science - Abstract
Glass transition in soft materials can be affected by the topology of constituent particles, but the detail remains elusive. Here, Smrek et al. show that the interplay between circular topology of ring polymers and their active segments generates a new state of matter, namely active topological glass.
- Published
- 2020
- Full Text
- View/download PDF
4. Emergence of active topological glass through directed chain dynamics and nonequilibrium phase segregation
- Author
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Iurii Chubak, Christos N. Likos, Kurt Kremer, and Jan Smrek
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Physics ,QC1-999 - Abstract
Active matter states defy many notions that have been established for systems in thermodynamic equilibrium. Nevertheless, the lack of detailed balance might be utilized to design nonequilibrium materials with unique properties. Recently we have shown, employing a model of ring polymers containing segments with a larger mobility than given by equilibrium thermal fluctuations, that making polymers with intrinsic topology active can result in states that relax extremely slowly, the so-called active topological glass. In this paper, we focus on the role of nonequilibrium phase separation in the vitrification process. In particular, we detail the polymer dynamics and show that such activity-driven glassy states arise from heterogeneity of segmental dynamics that emerges on all scales. Provided that the activity quench is strong enough, the rings feature an oriented reptationlike motion, with the active segment serving as an effective chain's end, resulting into a dramatic increase of inter-ring treading that vitrifies the system. The scaling properties of the ensuing steady-state ring conformations, which are significantly elongated and usually possess a doubly folded structure, are discussed and compared to equilibrium counterparts. We further examine the connection between the glass formation and the nonequilibrium phase separation and we find that both appear to be initiated by the contrasting dynamics of ring segments. Finally, we consider the effect of nonequilibrium phase separation in other active copolymer architectures.
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- 2020
- Full Text
- View/download PDF
5. Active Topological Glass Confined within a Spherical Cavity
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Iurii Chubak, Stanard Mebwe Pachong, Kurt Kremer, Christos N. Likos, and Jan Smrek
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Inorganic Chemistry ,Polymers and Plastics ,Organic Chemistry ,Materials Chemistry - Abstract
We study active topological glass under spherical confinement, allowing us to exceed the chain lengths simulated previously and determine the critical exponents of the arrested conformations. We find a previously unresolved "tank-treading" dynamic mode of active segments along the ring contour. This mode can enhance active-passive phase separation in the state of active topological glass when both diffusional and conformational relaxation of the rings are significantly suppressed. Within the observational time, we see no systematic trends in the positioning of the separated active domains within the confining sphere. The arrested state exhibits coherent stochastic rotations. We discuss possible connections of the conformational and dynamic features of the system to chromosomes enclosed in the nucleus of a living cell.
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- 2022
6. Quadrupolar
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Iurii, Chubak, Leeor, Alon, Emilia V, Silletta, Guillaume, Madelin, Alexej, Jerschow, and Benjamin, Rotenberg
- Abstract
Nuclear magnetic resonance relaxometry represents a powerful tool for extracting dynamic information. Yet, obtaining links to molecular motion is challenging for many ions that relax through the quadrupolar mechanism, which is mediated by electric field gradient fluctuations and lacks a detailed microscopic description. For sodium ions in aqueous electrolytes, we combine ab initio calculations to account for electron cloud effects with classical molecular dynamics to sample long-time fluctuations, and obtain relaxation rates in good agreement with experiments over broad concentration and temperature ranges. We demonstrate that quadrupolar nuclear relaxation is sensitive to subpicosecond dynamics not captured by previous models based on water reorientation or cluster rotation. While ions affect the overall water retardation, experimental trends are mainly explained by dynamics in the first two solvation shells of sodium, which contain mostly water. This work thus paves the way to the quantitative understanding of quadrupolar relaxation in electrolyte and bioelectrolyte systems.
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- 2022
7. Self-Organization and Flow of Low-Functionality Telechelic Star Polymers with Varying Attraction
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Michael P. Howard, Athanassios Z. Panagiotopoulos, Christos N. Likos, Esmaeel Moghimi, Antonia Statt, Konstantinos Ntetsikas, Georgios Polymeropoulos, Dimitris Vlassopoulos, Iurii Chubak, Dimitra Founta, and Nikolaos Hadjichristidis
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Self-organization ,Physics ,Quantitative Biology::Biomolecules ,Focus (computing) ,Polymers and Plastics ,Organic Chemistry ,Astrophysics::Cosmology and Extragalactic Astrophysics ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Attraction ,0104 chemical sciences ,Condensed Matter::Soft Condensed Matter ,Inorganic Chemistry ,Character (mathematics) ,Star polymer ,Flow (mathematics) ,Chemical physics ,Materials Chemistry ,0210 nano-technology ,Patchy particles ,Astrophysics::Galaxy Astrophysics - Abstract
We combine state-of-the art synthesis, simulations, and physical experiments to explore the tunable, responsive character of telechelic star polymers as models for soft patchy particles. We focus on the simplest possible system: a star comprising three asymmetric block copolymer arms with solvophilic inner and solvophobic outer blocks. Our dilute solution studies reveal the onset of a second slow mode in the intermediate scattering functions as the temperature decreases below the θ-point of the outer block, as well as the size reduction of single stars upon further decreasing temperature. Clusters comprising multiple stars are formed and their average dimensions, akin to the single star size, counterintuitively decrease upon cooling. A similar phenomenology is observed in simulations upon increasing attraction between the outer blocks and is rationalized as a result of the interplay between interstar associations and steric repulsion between the star cores. Since our simulations are able to describe the experimental findings reliably, we can use them with confidence to make predictions at conditions and flow regimes that are inaccessible experimentally. Specifically, we employ simulations to investigate flow properties of the system at high shear rates, revealing shear thinning behavior caused by the breakup of interstar associations under flow. On the other hand, the zero-shear viscosity obtained experimentally exhibits a rather weak activation energy, which increases upon rising star concentration. These findings demonstrate the unusual properties of telechelic star polymers even in the dilute regime. They also offer a powerful toolbox for designing soft patchy particles and exploring their unprecedented responsive properties further on.
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- 2022
8. The influence of arm composition on the self-assembly of low-functionality telechelic star polymers in dilute solutions
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Nikos Hadjichristidis, Esmaeel Moghimi, Konstantinos Ntetsikas, Georgios Polymeropoulos, Dimitra Founta, Iurii Chubak, Christos N. Likos, and Dimitris Vlassopoulos
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Work (thermodynamics) ,Materials science ,Polymers and Plastics ,Properties ,Self-assembly ,Composition (combinatorics) ,Mechanical ,Stars ,Colloid and Surface Chemistry ,Star polymer ,Coupling (computer programming) ,Thermal ,Chemical physics ,Materials Chemistry ,Nanoparticles ,Polymer brushes ,Polymer synthesis ,Physical and Theoretical Chemistry ,Spatial extent ,Gels ,Micelles - Abstract
We combine synthesis, physical experiments, and computer simulations to investigate self-assembly patterns of low-functionality telechelic star polymers (TSPs) in dilute solutions. In particular, in this work, we focus on the effect of the arm composition and length on the static and dynamic properties of TSPs, whose terminal blocks are subject to worsening solvent quality upon reducing the temperature. We find two populations, single stars and clusters, that emerge upon worsening the solvent quality of the outer block. For both types of populations, their spatial extent decreases with temperature, with the specific details (such as temperature at which the minimal size is reached) depending on the coupling between inter- and intra-molecular associations as well as their strength. The experimental results are in very good qualitative agreement with coarse-grained simulations, which offer insights into the mechanism of thermoresponsive behavior of this class of materials.
- Published
- 2020
9. Effects of topological constraints on linked ring polymers in solvents of varying quality
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Zahra Ahmadian Dehaghani, Mohammad Reza Ejtehadi, Christos N. Likos, and Iurii Chubak
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chemistry.chemical_classification ,Materials science ,Catenane ,02 engineering and technology ,General Chemistry ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Ring (chemistry) ,Topology ,01 natural sciences ,0104 chemical sciences ,Solvent ,Molecular dynamics ,Quality (physics) ,chemistry ,Radius of gyration ,0210 nano-technology ,Scaling - Abstract
We investigate the effects of topological constraints in catenanes composed of interlinked ring polymers on their size in a good solvent as well as on the location of their θ-point when the solvent quality is worsened. We mainly focus on poly[n]catenanes consisting of n ring polymers each of length m interlocked in a linear fashion. Using molecular dynamics simulations, we study the scaling of the poly[n]catenane's radius of gyration in a good solvent, assuming in general that Rg ∼ mμnν and we find that μ = 0.65 ± 0.02 and ν = 0.60 ± 0.01 for the range of n and m considered. These findings are further rationalized with the help of a mean-field Flory-like theory yielding the values of μ = 16/25 and ν = 3/5, consistent with the numerical results. We show that individual rings within catenanes feature a surplus swelling due to the presence of NL topological links. Furthermore, we consider poly[n]catenanes in solvents of varying quality and we demonstrate that the presence of topological links leads to an increase of its θ-temperature in comparison to isolated linear and ring chains with the following ordering: Tθcatenane > Tθlinear > Tθring. Finally, we show that the presence of links similarly raises the θ-temperature of a single linked ring in comparison to an unlinked one, bringing its θ-temperature close to the one of a poly[n]catenane.
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- 2020
10. MetalWalls: Simulating electrochemical interfaces between polarizable electrolytes and metallic electrodes
- Author
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Alessandro Coretti, Camille Bacon, Roxanne Berthin, Alessandra Serva, Laura Scalfi, Iurii Chubak, Kateryna Goloviznina, Matthieu Haefele, Abel Marin-Laflèche, Benjamin Rotenberg, Sara Bonella, Mathieu Salanne, Centre Européen de Calcul Atomique et Moléculaire (CECAM), École normale supérieure de Lyon (ENS de Lyon)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Universität Wien, PHysicochimie des Electrolytes et Nanosystèmes InterfaciauX (PHENIX), Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Réseau sur le stockage électrochimique de l'énergie (RS2E), Aix Marseille Université (AMU)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Collège de France (CdF (institution))-Université de Picardie Jules Verne (UPJV)-Ecole Nationale Supérieure de Chimie de Paris - Chimie ParisTech-PSL (ENSCP), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Université Grenoble Alpes (UGA)-Université Grenoble Alpes (UGA)-Nantes Université (Nantes Univ)-Université de Montpellier (UM)-Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM), Université de Montpellier (UM), Laboratoire de Mathématiques et de leurs Applications [Pau] (LMAP), Université de Pau et des Pays de l'Adour (UPPA)-Centre National de la Recherche Scientifique (CNRS), Maison de la Simulation (MDLS), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), and European Project: 676629,H2020 Pilier Excellent Science,H2020-EINFRA-2015-1,EoCoE(2015)
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ewald summation ,density ,model ,molecular-dynamics ,force-field ,General Physics and Astronomy ,charges ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,origin ,surface ,Physical and Theoretical Chemistry ,[CHIM.OTHE]Chemical Sciences/Other ,temperature ionic liquids ,energy - Abstract
International audience; Electrochemistry is central to many applications, ranging from biology to energy science. Studies now involve a wide range of techniques, both experimental and theoretical. Modeling and simulations methods, such as density functional theory or molecular dynamics, provide key information on the structural and dynamic properties of the systems. Of particular importance are polarization effects of the electrode/electrolyte interface, which are difficult to simulate accurately. Here, we show how these electrostatic interactions are taken into account in the framework of the Ewald summation method. We discuss, in particular, the formal setup for calculations that enforce periodic boundary conditions in two directions, a geometry that more closely reflects the characteristics of typical electrolyte/electrode systems and presents some differences with respect to the more common case of periodic boundary conditions in three dimensions. These formal developments are implemented and tested in MetalWalls, a molecular dynamics software that captures the polarization of the electrolyte and allows the simulation of electrodes maintained at a constant potential. We also discuss the technical aspects involved in the calculation of two sets of coupled degrees of freedom, namely the induced dipoles and the electrode charges. We validate the implementation, first on simple systems, then on the well-known interface between graphite electrodes and a room-temperature ionic liquid. We finally illustrate the capabilities of MetalWalls by studying the adsorption of a complex functionalized electrolyte on a graphite electrode.
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- 2022
11. NMR relaxation rates of quadrupolar aqueous ions from classical molecular dynamics using force-field specific Sternheimer factors
- Author
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Antoine Carof, Laura Scalfi, Benjamin Rotenberg, Iurii Chubak, PHysicochimie des Electrolytes et Nanosystèmes InterfaciauX (PHENIX), Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Physique et Chimie Théoriques (LPCT), and Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)
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Chemical Physics (physics.chem-ph) ,Physics ,010304 chemical physics ,Force field (physics) ,Relaxation (NMR) ,FOS: Physical sciences ,Charge density ,Condensed Matter - Soft Condensed Matter ,01 natural sciences ,Molecular physics ,3. Good health ,Computer Science Applications ,Molecular dynamics ,Atomic orbital ,Polarizability ,Physics - Chemical Physics ,0103 physical sciences ,Soft Condensed Matter (cond-mat.soft) ,[CHIM]Chemical Sciences ,Density functional theory ,Physical and Theoretical Chemistry ,010306 general physics ,Electric field gradient - Abstract
The nuclear magnetic resonance (NMR) relaxation of quadrupolar nuclei is governed by the electric field gradient (EFG) fluctuations at their position. In classical molecular dynamics (MD), the electron cloud contribution to the EFG can be included via the Sternheimer approximation, in which the full EFG at the nucleus that can be computed using quantum DFT is considered to be proportional to that arising from the external, classical charge distribution. In this work, we systematically assess the quality of the Sternheimer approximation as well as the impact of the classical force field (FF) on the NMR relaxation rates of aqueous quadrupolar ions at infinite dilution. In particular, we compare the rates obtained using an ab initio parametrized polarizable FF, a recently developed empirical FF with scaled ionic charges and a simple empirical non-polarizable FF with formal ionic charges. Surprisingly, all three FFs considered yield good values for the rates of smaller and less polarizable solutes, provided that a model-specific Sternheimer parametrization is employed. Yet, the polarizable and scaled charge FFs yield better estimates for divalent and more polarizable species. We find that a linear relationship between the quantum and classical EFGs holds well in all of the cases considered, however, such an approximation often leads to quite large errors in the resulting EFG variance, which is directly proportional to the computed rate. We attempted to reduce the errors by including first order nonlinear corrections to the EFG, yet no clear improvement for the resulting variance has been found. The latter result indicates that more refined methods for determining the EFG at the ion position, in particular those that take into account the instantaneous atomic environment around an ion, might be necessary to systematically improve the NMR relaxation rate estimates in classical MD., 50 pages, 15 figures, 5 tables, supporting information
- Published
- 2021
12. Topological and threading effects in polydisperse ring polymer solutions
- Author
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Iurii Chubak, Jan Smrek, and Christos N. Likos
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Steric effects ,Materials science ,Monte Carlo method ,Biophysics ,effective models ,010402 general chemistry ,Topology ,Ring (chemistry) ,01 natural sciences ,0103 physical sciences ,topological potential ,Physical and Theoretical Chemistry ,Computer Science::Operating Systems ,Molecular Biology ,Monte Carlo simulation ,chemistry.chemical_classification ,Quantitative Biology::Biomolecules ,010304 chemical physics ,coarse-graining ,Polymer ,Condensed Matter Physics ,0104 chemical sciences ,Computer Science::Performance ,Condensed Matter::Soft Condensed Matter ,chemistry ,Computer Science::Programming Languages ,Granularity ,threading ,Threading (protein sequence) ,Ring polymers - Abstract
We explore effective interactions in dilute polydisperse ring polymer solutions. Based on a topological and threading analysis, we deduce the steric, topological and threading contributions to the ...
- Published
- 2021
13. Emergence of active topological glass through directed chain dynamics and nonequilibrium phase segregation
- Author
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Christos N. Likos, Kurt Kremer, Jan Smrek, and Iurii Chubak
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chemistry.chemical_classification ,Work (thermodynamics) ,Materials science ,Dynamics (mechanics) ,Non-equilibrium thermodynamics ,Polymer ,Condensed Matter::Disordered Systems and Neural Networks ,01 natural sciences ,010305 fluids & plasmas ,Condensed Matter::Soft Condensed Matter ,chemistry ,Chain (algebraic topology) ,Chemical physics ,Phase (matter) ,0103 physical sciences ,010306 general physics - Abstract
This work shows how glassy behavior emerges from the active, directed polymer dynamics that is triggered by the non-equilibrium phase separation.
- Published
- 2020
14. Melts of nonconcatenated rings in spherical confinement
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Kurt Kremer, Iurii Chubak, Jan Smrek, and Stanard Mebwe Pachong
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Physics ,010304 chemical physics ,Condensed matter physics ,Dynamics (mechanics) ,Relaxation (NMR) ,General Physics and Astronomy ,Radial distribution ,Radius ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,0103 physical sciences ,Perpendicular ,Center of mass ,Physical and Theoretical Chemistry ,Anisotropy ,Scaling - Abstract
Motivated by the chromosomes enclosed in a cell nucleus, we study a spherically confined system of a small number of long unknotted and nonconcatenated polymer rings in a melt and systematically compare it with the bulk results. We find that universal scaling exponents of the bulk system also apply in the confined case; however, certain important differences arise. First, due to confinement effects, the static and threading properties of the rings depend on their radial position within the confining sphere. Second, the rings’ dynamics is overall subdiffusive, but anisotropic along the directions parallel and perpendicular to the sphere’s radius. The radial center of mass displacements of the rings are in general much smaller than the angular ones, which is caused by the confinement-induced inhomogeneous radial distribution of the whole rings within the sphere. Finally, we find enhanced contact times between rings as compared to the bulk, which indicates slow and predominantly coordinated pathways of the relaxation of the system.
- Published
- 2020
15. Ring polymers are much stronger depleting agents than linear ones
- Author
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Christos N. Likos, Emanuele Locatelli, and Iurii Chubak
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Materials science ,Biophysics ,02 engineering and technology ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Physics::Fluid Dynamics ,coarse-graining ,confinement ,density functional theory ,depletion ,Ring polymers ,Planar ,Physical and Theoretical Chemistry ,Molecular Biology ,chemistry.chemical_classification ,Quantitative Biology::Biomolecules ,Mathematics::Commutative Algebra ,Polymer ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,0104 chemical sciences ,Condensed Matter::Soft Condensed Matter ,chemistry ,Chemical physics ,Density functional theory ,Granularity ,0210 nano-technology - Abstract
We investigate the conformations and shapes of circular polymers close to planar, hard walls as well as the ensuing ring–wall and polymer-induced wall–wall interactions in ring polymer solutions. W...
- Published
- 2018
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