6 results on '"Ida Lindström"'
Search Results
2. PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex
- Author
-
Thorsten Stiewe, Stephanie Link, Catherine Regnard, Brian Hendrich, Ramona M. M. Spitzer, Joel P. Mackay, Axel Imhof, Thomas Burgold, Ida Lindström, Eva C. Keilhauer, Jason Low, Marek Bartkuhn, Andrea Nist, Maryam Sana, Sebastian Pünzeler, Matthias Mann, Mario Torrado, Moritz Völker-Albert, Sandra B. Hake, Lindström, Ida [0000-0002-0405-778X], Stiewe, Thorsten [0000-0003-0134-7826], Imhof, Axel [0000-0003-2993-8249], Mann, Matthias [0000-0003-1292-4799], Mackay, Joel P [0000-0001-7508-8033], Hake, Sandra B [0000-0003-0029-6588], and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,Chromosomal Proteins, Non-Histone ,Science ,General Physics and Astronomy ,Methylation ,General Biochemistry, Genetics and Molecular Biology ,Histone Deacetylases ,Article ,Histones ,03 medical and health sciences ,Mice ,Nucleosome ,Animals ,Humans ,RBBP4 ,RNA, Small Interfering ,lcsh:Science ,Multidisciplinary ,biology ,Chemistry ,Lysine ,Acetylation ,General Chemistry ,Mi-2/NuRD complex ,Linker DNA ,HDAC1 ,Chromatin ,Cell biology ,Nucleosomes ,Repressor Proteins ,030104 developmental biology ,Histone ,HEK293 Cells ,biology.protein ,Trans-Activators ,lcsh:Q ,Mi-2 Nucleosome Remodeling and Deacetylase Complex - Abstract
Chromatin structure and function is regulated by reader proteins recognizing histone modifications and/or histone variants. We recently identified that PWWP2A tightly binds to H2A.Z-containing nucleosomes and is involved in mitotic progression and cranial–facial development. Here, using in vitro assays, we show that distinct domains of PWWP2A mediate binding to free linker DNA as well as H3K36me3 nucleosomes. In vivo, PWWP2A strongly recognizes H2A.Z-containing regulatory regions and weakly binds H3K36me3-containing gene bodies. Further, PWWP2A binds to an MTA1-specific subcomplex of the NuRD complex (M1HR), which consists solely of MTA1, HDAC1, and RBBP4/7, and excludes CHD, GATAD2 and MBD proteins. Depletion of PWWP2A leads to an increase of acetylation levels on H3K27 as well as H2A.Z, presumably by impaired chromatin recruitment of M1HR. Thus, this study identifies PWWP2A as a complex chromatin-binding protein that serves to direct the deacetylase complex M1HR to H2A.Z-containing chromatin, thereby promoting changes in histone acetylation levels., PWWP2A is a chromatin-binding transcriptional regulator that mediates mitosis-progression. Here, the authors provide evidence that PWWP2A directly interacts with H2A.Z nucleosomes, DNA and H3K36me3, binds to an MTA1-specific subcomplex of the NuRD complex (M1HR) and promotes changes to histone acetylation.
- Published
- 2018
3. Dynamics, Conformational Entropy, and Frustration in Protein–Protein Interactions Involving an Intrinsically Disordered Protein Domain
- Author
-
Ida Lindström and Jakob Dogan
- Subjects
0301 basic medicine ,Entropy ,Protein domain ,Calorimetry ,010402 general chemistry ,Intrinsically disordered proteins ,01 natural sciences ,Biochemistry ,Protein–protein interaction ,Hydrophobic effect ,03 medical and health sciences ,Protein Interaction Mapping ,Protein Interaction Domains and Motifs ,CREB-binding protein ,biology ,Chemistry ,STAT2 Transcription Factor ,Isothermal titration calorimetry ,General Medicine ,Conformational entropy ,CREB-Binding Protein ,0104 chemical sciences ,Intrinsically Disordered Proteins ,Kinetics ,030104 developmental biology ,biology.protein ,Biophysics ,Molecular Medicine ,Hydrophobic and Hydrophilic Interactions ,Protein Binding ,Entropy (order and disorder) - Abstract
Intrinsically disordered proteins (IDPs) are abundant in the eukaryotic proteome. However, little is known about the role of subnanosecond dynamics and the conformational entropy that it represents in protein-protein interactions involving IDPs. Using nuclear magnetic resonance side chain and backbone relaxation, stopped-flow kinetics, isothermal titration calorimetry, and computational studies, we have characterized the interaction between the globular TAZ1 domain of the CREB binding protein and the intrinsically disordered transactivation domain of STAT2 (TAD-STAT2). We show that the TAZ1/TAD-STAT2 complex retains considerable subnanosecond motions, with TAD-STAT2 undergoing only a partial disorder-to-order transition. We report here the first experimental determination of the conformational entropy change for both binding partners in an IDP binding interaction and find that the total change even exceeds in magnitude the binding enthalpy and is comparable to the contribution from the hydrophobic effect, demonstrating its importance in the binding energetics. Furthermore, we show that the conformational entropy change for TAZ1 is also instrumental in maintaining a biologically meaningful binding affinity. Strikingly, a spatial clustering of very high amplitude motions and a cluster of more rigid sites in the complex exist, which through computational studies we found to overlap with regions that experience energetic frustration and are less frustrated, respectively. Thus, the residual dynamics in the bound state could be necessary for faster dissociation, which is important for proteins that interact with multiple binding partners.
- Published
- 2018
- Full Text
- View/download PDF
4. Native Hydrophobic Binding Interactions at the Transition State for Association between the TAZ1 Domain of CBP and the Disordered TAD-STAT2 Are Not a Requirement
- Author
-
Ida Lindström and Jakob Dogan
- Subjects
0301 basic medicine ,Sialoglycoproteins ,Protein domain ,Plasma protein binding ,Intrinsically disordered proteins ,Biochemistry ,03 medical and health sciences ,Transactivation ,Protein Domains ,Humans ,CREB-binding protein ,biology ,Chemistry ,STAT2 Transcription Factor ,Peptide Fragments ,Intrinsically Disordered Proteins ,Folding (chemistry) ,Crystallography ,030104 developmental biology ,Models, Chemical ,Proteome ,Biophysics ,biology.protein ,Hydrophobic and Hydrophilic Interactions ,Protein Binding ,Binding domain - Abstract
A significant fraction of the eukaryotic proteome consists of proteins that are either partially or completely disordered under native-like conditions. Intrinsically disordered proteins (IDPs) are common in protein-protein interactions and are involved in numerous cellular processes. Although many proteins have been identified as disordered, much less is known about the binding mechanisms of the coupled binding and folding reactions involving IDPs. Here we have analyzed the rate-limiting transition state for binding between the TAZ1 domain of CREB binding protein and the intrinsically disordered transactivation domain of STAT2 (TAD-STAT2) by site-directed mutagenesis and kinetic experiments (Φ-value analysis) and found that the native protein-protein binding interface is not formed at the transition state for binding. Instead, native hydrophobic binding interactions form late, after the rate-limiting barrier has been crossed. The association rate constant in the absence of electrostatic enhancement was determined to be rather high. This is consistent with the Φ-value analysis, which showed that there are few or no obligatory native contacts. Also, linear free energy relationships clearly demonstrate that native interactions are cooperatively formed, a scenario that has usually been observed for proteins that fold according to the so-called nucleation-condensation mechanism. Thus, native hydrophobic binding interactions at the rate-limiting transition state for association between TAD-STAT2 and TAZ1 are not a requirement, which is generally in agreement with previous findings on other IDP systems and might be a common mechanism for IDPs.
- Published
- 2017
- Full Text
- View/download PDF
5. The transition state structure for binding between TAZ1 of CBP and the disordered Hif-1α CAD
- Author
-
Ida Lindström, Eva Andersson, and Jakob Dogan
- Subjects
Binding Sites ,lcsh:R ,lcsh:Medicine ,Molecular Dynamics Simulation ,Hydroxylation ,Hypoxia-Inducible Factor 1, alpha Subunit ,CREB-Binding Protein ,Article ,Recombinant Proteins ,Protein Structure, Tertiary ,Kinetics ,Protein Domains ,Mutagenesis, Site-Directed ,Humans ,lcsh:Q ,lcsh:Science ,Hydrophobic and Hydrophilic Interactions ,Protein Binding - Abstract
Intrinsically disordered proteins (IDPs) are common in eukaryotes. However, relatively few experimental studies have addressed the nature of the rate-limiting transition state for the coupled binding and folding reactions involving IDPs. By using site-directed mutagenesis in combination with kinetics measurements we have here characterized the transition state for binding between the globular TAZ1 domain of CREB binding protein and the intrinsically disordered C-terminal activation domain of Hif-1α (Hif-1α CAD). A total of 17 Hif-1α CAD point-mutations were generated and a Φ-value binding analysis was carried out. We found that native hydrophobic binding interactions are not formed at the transition state. We also investigated the effect the biologically important Hif-1α CAD Asn-803 hydroxylation has on the binding kinetics, and found that the whole destabilization effect due the hydroxylation is within the dissociation rate constant. Thus, the rate-limiting transition state is “disordered-like”, with native hydrophobic binding contacts being formed cooperatively after the rate-limiting barrier, which is clearly shown by linear free energy relationships. The same behavior was observed in a previously characterized TAZ1/IDP interaction, which may suggest common features for the rate-limiting transition state for TAZ1/IDP interactions.
- Published
- 2018
6. Konsten att skapa SinnesEkonomi
- Author
-
Östansjö, Helena, Holm, Carola, and Ida, Lindström
- Subjects
Upplevelser ,Experience Economy ,Sinnesmarknadsföring ,Spa - Abstract
Upplevelsens era är här och ställer samtliga aktörer i samhället inför utmaningar. Upplevelsen ska inte längre bara fylla ett funktionellt behov, den ska beröra konsumenten på ett helt annat sätt. Allt i syfte att kunna erbjuda konsumenten en upplevelse utöver det vanliga för att som företag lyckas med att särskilja sig från sina konkurrenter. En strategi för att lyckas med differentiering är att engagera konsumentens sinnen i upplevelsen. Uppsatsen tar utgångspunkt i två teoretiska begrepp: Pine & Gilmore´s (1999) strategimodell, The Experience Realms, och Hulténs m.fl. (2007) teori om sinnesmarknadsföring. Vårt arbete syftar till att utreda vad som händer i mötet mellan dessa två teorier på ett konkret fält – Orbaden Konferens och Spa. Studien har varit av deduktiv karaktär. Vi har tillämpat kvalitativ metod då vi med utgångspunkt från valda teorier önskat undersöka hur ett spa-besök upplevs av gäster, samt utreda hur en specifik anläggning arbetar med att skapa upplevelser. Vi genomförde fyra kvalitativa intervjuer, två med representanter från Orbaden Konferens och Spa, två med personer som har gedigen erfarenhet av att vara besökare på spa. Då teorin kopplades till empirin kunde flera mötespunkter av vikt urskiljas. Mötespunkterna som framträtt kan vara av avgörande vikt vid skapandet av upplevelser.
- Published
- 2008
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.