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6. GraphPack: DESIGN AND FEATURES

7. Editorial

11. Systems biology graphical notation markup language (SBGNML) version 0.3

12. Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

13. Algorithms for effective querying of compound graph-based pathway databases

14. Oncogenic signaling pathways in the Cancer Genome Atlas

15. A trie-based approach for compacting automata

16. Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal.

17. A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.

18. fCoSE: A Fast Compound Graph Layout Algorithm with Constraint Support.

19. SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.

20. Analyzing causal relationships in proteomic profiles using CausalPath.

21. Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.

22. Causal interactions from proteomic profiles: Molecular data meet pathway knowledge.

24. Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.

25. Community-driven roadmap for integrated disease maps.

26. Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.

27. Efficient methods and readily customizable libraries for managing complexity of large networks.

28. PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data.

29. An algorithm for automated layout of process description maps drawn in SBGN.

30. SBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps.

31. Integrating biological pathways and genomic profiles with ChiBE 2.

32. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

33. Software support for SBGN maps: SBGN-ML and LibSBGN.

34. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

35. Discovering modulators of gene expression.

36. The BioPAX community standard for pathway data sharing.

37. ChiBE: interactive visualization and manipulation of BioPAX pathway models.

38. Algorithms for effective querying of compound graph-based pathway databases.

39. The Systems Biology Graphical Notation.

40. PATIKAmad: putting microarray data into pathway context.

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