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Knowledge of insect pest ecology and biology is important for maximizing crop protection and reducing crop losses. Currently, we lack an efficient control program for the cocoa mirid Sahlbergella singularis Haglund (Hemiptera: Miridae), the principal insect pest of cocoa in West and Central Africa. A 2-yr study was conducted in 11 plantations across Ayos and Konye, two of the largest cocoa growing areas of Cameroon. We evaluated the effects of mirid sex pheromone and climatic variations on mirid population dynamics and their associated cocoa damage. Sex pheromone traps caught 1.5-fold higher mirids in Ayos than in Konye, with more overall counts in 2015 than in 2016. Cocoa pod counts were also significantly higher in 2015 than in 2016 and were negatively correlated with temperature and relative humidity. In both localities, mirid populations and associated cocoa pod damage were suppressed in plantations where sex pheromone traps were used. Damage incidence was positively correlated with mirid counts, confirming that the cocoa pod is the preferential site for mirid feeding and reproduction. As such, damage incidence could be used as proxy for comparative mirid population level due to the mirid's cryptic habit. Of the recorded weather variables, only relative humidity was correlated (negatively) with damage severity. Our data on the relationships between damage caused by mirids and their population dynamics and sex pheromone trap catches suggest that an effective control strategy using mass trapping could be developed for mirid management in cocoa plantations.

Background: Alzheimer's disease (AD) is a progressive neurological disorder characterized by a wide range of cognitive and non-cognitive impairments. The present study was designed to investigate the potential effects of cacao on cognitive and non-cognitive performance and to identify the role of oxidative stress in an AD animal model induced by unilateral intracerebroventricular (U-ICV) injection of amyloid beta1-42 (Aβ1-42). Methods: Oral administration of cacao (0.5 g/kg/day) was performed for 60 consecutive days. Following 60 days, the open-field (OF) test, elevated plus-maze (EPM) test, novel object recognition (NOR) test, Barnes maze (BM) test, and Morris water maze (MWM) test were used to evaluate locomotor activity, anxiety-like behavior, recognition memory, and spatial memory, respectively. Total oxidant status (TOS) and total antioxidant capacity (TAC) in plasma were also examined. Furthermore, the number of healthy cells in the hippocampus's dentate gyrus (DG), CA1, and CA3 regions were identified using hematoxylin and eosin staining. Results: The results indicated that the injection of Aβ1-42 in rats led to recognition memory and spatial memory impairments, as well as increased anxiety. This was accompanied by decreased total antioxidant capacity (TAC), increased total oxidative stress (TOS), and increased neuronal death. Conversely, cacao treatment in AD rats improved memory function, reduced anxiety, modulated oxidative stress balance, and decreased neuronal death. Conclusion: The findings suggest that cacao's ability to improve the balance between oxidants and antioxidants and prevent neuronal loss may be the mechanism underlying its beneficial effect against AD-related cognitive and non-cognitive impairments. [ABSTRACT FROM AUTHOR]

Bioinformatics has emerged as a valuable tool for screening drugs and understanding their effects. This systematic review aimed to evaluate whether in silico studies using anti-obesity peptides targeting therapeutic pathways for obesity, when subsequently evaluated in vitro and in vivo, demonstrated effects consistent with those predicted in the computational analysis. The review was framed by the question: "What peptides or proteins have been used to treat obesity in in silico studies?" and structured according to the acronym PECo. The systematic review protocol was developed and registered in PROSPERO (CRD42022355540) in accordance with the PRISMA-P, and all stages of the review adhered to these guidelines. Studies were sourced from the following databases: PubMed, ScienceDirect, Scopus, Web of Science, Virtual Heath Library, and EMBASE. The search strategies resulted in 1015 articles, of which, based on the exclusion and inclusion criteria, 7 were included in this systematic review. The anti-obesity peptides identified originated from various sources including bovine alpha-lactalbumin from cocoa seed (Theobroma cacao L.), chia seed (Salvia hispanica L.), rice bran (Oryza sativa), sesame (Sesamum indicum L.), sea buckthorn seed flour (Hippophae rhamnoides), and adzuki beans (Vigna angularis). All articles underwent in vitro and in vivo reassessment and used molecular docking methodology in their in silico studies. Among the studies included in the review, 46.15% were classified as having an "uncertain risk of bias" in six of the thirteen criteria evaluated. The primary target investigated was pancreatic lipase (n = 5), with all peptides targeting this enzyme demonstrating inhibition, a finding supported both in vitro and in vivo. Additionally, other peptides were identified as PPARγ and PPARα agonists (n = 2). Notably, all peptides exhibited different mechanisms of action in lipid metabolism and adipogenesis. The findings of this systematic review underscore the effectiveness of computational simulation as a screening tool, providing crucial insights and guiding in vitro and in vivo investigations for the discovery of novel anti-obesity peptides. [ABSTRACT FROM AUTHOR]

Theobroma cacao is primarily cultivated for its seeds. In the Philippines, where cacao yields are decreased by pod rots and vascular streak dieback (VSD)-like symptoms, the fungus Lasiodiplodia theobromae (Botryospaheriaceae) is the only reported species of Lasiodiplodia reported to cause disease in cacao. Here to identify and determine the pathogenicity of Lasiodiplodia isolates from cacao trees, we isolated Lasiodiplodia from from a leaf with blight (isolate PH22-080), stem with vascular streak (PH22-060), pod rot (PH22-120), an asymptomatic stem (PH22-014), and leaf litter (PH22-007). All strains were pathogenic on wounded leaves and stems and infected pods even without wounds. On the basis of molecular analysis of combined sequence data for ITS, rpb2, tef1-α and tub2 and morphological characteristics, the strains were identified as L. pseudotheobromae (PH22-080), L. theobromae (PH22-120), and Lasiodiplodia sp. (PH22-060), which were confirmed to be pathogenic on cacao leaves, stems, and pods. L. theobromae (PH22-007) and L. hormozganensis (PH22-014) showed potential to cause disease in cacao but further investigation is needed. [ABSTRACT FROM AUTHOR]

Ceratocystis fimbriata is an important pathogen with a wide host range that causes xylem lesions, wilt and death in different plant species. More adapted populations of C. fimbriata have probably been selected to specific hosts and high genetic and physiological variability can be found within the pathogen populations. Thus, molecular analysis and inoculation studies were performed to investigate the genetic and physiological variability of isolates of C. fimbriata complex obtained from different host species and geographic regions in Brazil. The minimum spanning tree analysis based on 14 simple‐sequence repeat (SSR) markers of C. fimbriata exhibited a clear clustering of isolates according to host, where each groups of isolates differed in at least five loci. In addition, inoculation of eight hosts with 10 isolates revealed a wide variation in aggressiveness. By assessing the length of xylem lesions caused by C. fimbriata isolates, Ficus carica was found to be the most susceptible host, followed by Mangifera indica. Only the isolates from Theobroma cacao and Carapa guianensis proved to be host specialized. Overall, the isolates tested were more aggressive to the hosts from which they were sampled. [ABSTRACT FROM AUTHOR]

The green synthesis of silver nanoparticles offers a non-toxic, eco-friendly, economical, and efficient solution against various microorganisms. The study aimed to investigate the utilization of cocoa bean shells for the production of silver nanoparticles through green synthesis, besides its characterization and evaluation against foodborne pathogens. To this end, total phenolic compounds, individual bioactive compounds, and antioxidant activity were evaluated in the aqueous extract of the cocoa bean shell. In addition, the size and stability of the silver nanoparticles were investigated (zeta potential and dynamic light scattering), morphology (scanning electron microscopy), chemical composition (mid-infrared spectroscopy), and their effectiveness against Escherichia coli (ATCC 25922), Listeria monocytogenes (ATCC 19117), Staphylococcus aureus (ATCC 22923), Salmonella enteritidis (S64), Cronobacter sakazakii (ATCC 29004), and Klebsiella pneumoniae (ATCC 18883). The extract was rich in reducing agents and efficiently produced AgNPs with high surface area (74.51 ± 0.38 nm) and stability (− 17.97 ± 0.12 mV). The nanoparticles were also found to be effective against all tested pathogens, demonstrating the potential of agro-industrial waste to produce AgNPs for various industrial applications. [ABSTRACT FROM AUTHOR]

Mesoamerica is the center of origin of a great number of food crops that nowadays are part of a healthy diet. Pre-Columbian civilizations utilized more than 90% of these foods as ingredient or in main dishes, as well as for remedies and religious ceremonies. Since several years ago, Mesoamerican foods have been recognized by their outstanding concentration of bioactive compounds, including, phenolic compounds, pigments, essential fatty acids, amino acids, peptides, carbohydrates and vitamins, which provide a great number of health benefits. As a result of their unique composition, these ancient crops have several positive effects, such as hypoglycemic, antioxidant, anti-obesity, anti-inflammatory, anti-ageing, neuroprotective, anti-diarrheal, and anti-hypercholesterolemic capacity. Hence, this review is focused mainly in the anti-obesity and antioxidant potential of some of the most cultivated, harvested, as well as commercialized and consumed, food crops native of Mesoamerica, like, nopal and its fruit (Opuntia ficus indica spp.), chia (Salvia hispanica L.), pumpkin (Cucurbita spp.) and cacao (Theobroma cacao). [ABSTRACT FROM AUTHOR]

Shade trees are important in cocoa agroforestry systems; however, they release allelochemicals from various parts that affect understory plants. Unfortunately, information on allelochemicals produced by shade tree bark in cocoa plantation remain scarce. This study investigates the effect of allelochemicals from bark of shade trees on cocoa seedlings growth. The experiment was a 4 × 11 factorial study, and the treatments were four different concentrations from each of the 11 tree species. The treatments were laid out in a completely randomized design with four replicates. Data were collected at 30, 60, 90, 120, and 150 days after treatment applications. The tree species alone and bark extract concentrations alone significantly impacted plant height from 90 to 150 days after application. Albizia ferruginea (Guill. & Perr.) Benth, Celtis mildbraedii Engl., and Triplochiton scleroxylon K. Schum produced the highest cocoa seedling heights. All concentrations also influenced stem diameter of cocoa seedlings. Albizia ferruginea enhanced stem diameter significantly among tree species and the control. Tree species and bark extract concentrations interacted to increase fresh root weights and dry plant biomass. Albizia ferruginea consistently increased dry plant biomass, while C. mildbraedii produced the highest enhancement for fresh roots. All concentrations enhanced plant biomass, with the 75 mg mL−1 concentration consistently producing the highest plant fresh and dry weights. Albizia ferruginea and C. mildbraedii can be potential tree species in the cocoa agroforestry when 2‐month‐old cocoa seedlings are to be transplanted on the field. Bark extract of 75 mg mL−1 concentration can be used as a growth stimulant on cocoa seedlings. Core Ideas: Albizia ferruginea, Celtis mildbraedii, and Triplochiton scleroxylon were associated with the highest seedlings.All bark extract concentrations had an impact on the stem diameter of cocoa seedlings.Albizia ferruginea stood out by significantly enhancing stem diameter compared to the control.Albizia ferruginea produce higher dry plant biomass, and Celtis mildbraedii enhanced fresh roots and height.Note that 75 mg mL−1 concentration of bark extract consistently resulted in the highest fresh and dry plant weights. [ABSTRACT FROM AUTHOR]

Copyright of Environmental & Social Management Journal / Revista de Gestão Social e Ambiental is the property of Environmental & Social Management Journal and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The study of plant–microbe interactions is a rapidly growing research field, with increasing attention to the role of seed-borne microbial endophytes in protecting the plant during its development from abiotic and biotic stresses. Recent evidence suggests that seed microbiota is crucial in establishing the plant microbial community, affecting its composition and structure, and influencing plant physiology and ecology. For Theobroma cacao L., the diversity and composition of vertically transmitted microbes have yet to be addressed in detail. We explored the composition and diversity of seed-borne endophytes in cacao pods of commercial genotypes (ICS95, IMC67), recently liberated genotypes from AGROSAVIA (TCS01, TCS19), and landraces from Tumaco (Colombia) (AC9, ROS1, ROS2), to evaluate microbial vertical transmission and establishment in various tissues during plant development. We observed a higher abundance of Pseudomonas and Pantoea genera in the landraces and AGROSAVIA genotypes, while the commercial genotypes presented a higher number of bacteria species but in low abundance. In addition, all the genotypes and plant tissues showed a high percentage of fungi of the genus Penicillium. These results indicate that domestication in cacao has increased bacterial endophyte diversity but has reduced their abundance. We isolated some of these seed-borne endophytes to evaluate their potential as growth promoters and found that Bacillus, Pantoea, and Pseudomonas strains presented high production of indole acetic acid and ACC deaminase activity. Our results suggest that cacao domestication could lead to the loss of essential bacteria for seedling establishment and development. This study improves our understanding of the relationship and interaction between perennial plants and seed-borne microbiota. [ABSTRACT FROM AUTHOR]

This study investigated the impact of the depulping of cocoa beans after pod opening, as well as the influences of pod storage (PS) and fermentation time on the fermentation dynamics and the overall quality of beans and liquors made thereof. Twelve variations were conducted in three experimental runs (with/without depulping; 1-/3-day PS; and fermentation times of 3, 4, 5, 6 or 7 days). Fermentation dynamics (e.g., temperature and pH) and the quality of dried beans (e.g., cut-test and fermentation index) and liquors (sensory assessment, quantification of cocoa key-odorants and tastants) were investigated. It was demonstrated that 17–20% of cocoa pulp, relative to the total bean-pulp-mass weight, could be mechanically removed without negatively affecting the bean quality. No significant differences were found in the percentages of well-fermented beans after 5–6 days fermentation with 1-day PS, resulting in 49 ± 9% with, and 48 ± 12% without depulping. There were no significant differences in key tastants present in the liquors; however, significantly less volatile acids and esters were found when liquors were produced from 5–6 day-fermented depulped beans, with 1-day PS, without negatively affecting the sensory profiles. This strategy allows producers to maximize the cacao fruit's value by integrating part of the pulp into the cocoa value chain. [ABSTRACT FROM AUTHOR]

In Southeast Asia (SEA) fastidious fungi of the Ceratobasidium genus are associated with proliferation of sprouts and vascular necrosis in cacao and cassava, crops that were introduced from the tropical Americas to this region. Here, we report the isolation and in vitro culture of a Ceratobasidium sp. isolated from cassava with symptoms of witches' broom disease (CWBD), a devastating disease of this crop in SEA. The genome characterization using a hybrid assembly strategy identifies the fungus as an isolate of the species C. theobromae, the causal agent of vascular streak dieback of cacao in SEA. Both fungi have a genome size > 31 Mb (G+C content 49%), share > 98% nucleotide identity of the Internal Transcribed Spacer (ITS) and > 94% in genes used for species-level identification. Using RNAscope® we traced the pathogen and confirmed its irregular distribution in the xylem and epidermis along the cassava stem, which explains the obtention of healthy planting material from symptom-free parts of a diseased plant. These results are essential for understanding the epidemiology of CWBD, as a basis for disease management including measures to prevent further spread and minimize the risk of introducing C. theobromae via long-distance movement of cassava materials to Africa and the Americas. [ABSTRACT FROM AUTHOR]

Cocoa (Theobroma cacao L.) is one of the leading commodities in Indonesia. Cocoa pod husk is part of the mesocarp or part of the cacao pod husk that wraps the cocoa beans. Endophytic bacteria are microbes that live in host plant tissues and do not interfere with host plant growth. This study aimed to determine characteristics of endophytic bacterial isolates contained in endocarp cocoa pod husk and to determine the antioxidant power of endophytic bacterial isolates contained in cocoa pod husk. Isolation of endophytic bacteria from the inner pod of cocoa which be expected to produce antioxidants has been carried out. Isolation of bacteria using surface sterilization method. Antioxidant test using DPPH method (1,1-diphenyl-2-picrylhydrazyl) with UV-Vis spectrophotometer at 600 nm. Two isolates out of four endophytic bacteria were obtained from the results of the preliminary test of phenolic tests, namely isolates of bacteria KK2 and KK3 which had different colony morphology. The results of the secondary metabolite test showed that the bacterial isolates KK2 and KK3 contained flavonoids and phenolics. Based on the test results, the value of IC50 of bacterial isolate KK2 was 2104.58 ppm and KK3 bacterial isolate was 1123.04 ppm. The highest antioxidant activity was possessed by bacterial isolate KK3 and was classified as a very weak antioxidant. [ABSTRACT FROM AUTHOR]

Theobroma cacao plantations are of significant economic importance worldwide, primarily for chocolate production. During the harvest and processing of cocoa beans, they are subjected to fermentation either by microorganisms present in the environment (spontaneous fermentation) or the addition of starter cultures, with different strains directly contributing distinct flavor and color characteristics to the beans. In addition to fungi and bacteria, viruses are ubiquitous and can affect the quality of the fermentation process by infecting fermenting organisms, destabilizing microbial diversity, and consequently affecting fermentation quality. Therefore, in this study, we explored publicly available metatranscriptomic libraries of cocoa bean fermentation in Limon Province, Costa Rica, looking for viruses associated with fermenting microorganisms. Libraries were derived from the same sample at different time points: 7, 20, and 68 h of fermentation, corresponding to yeast- and lactic acid bacteria-driven phases. Using a comprehensive pipeline, we identified 68 viral sequences that could be assigned to 62 new viral species and 6 known viruses distributed among at least nine families, with particular abundance of elements from the Lenarviricota phylum. Interestingly, 44 of these sequences were specifically associated with ssRNA phages (Fiersviridae) and mostly fungi-infecting viral families (Botourmiaviridae, Narnaviridae, and Mitoviridae). Of note, viruses from those families show a complex evolutionary relationship, transitioning from infecting bacteria to infecting fungi. We also identified 10 and 3 viruses classified within the Totiviridae and Nodaviridae families, respectively. The quantification of the virus-derived RNAs shows a general pattern of decline, similar to the dynamic profile of some microorganism genera during the fermentation process. Unexpectedly, we identified narnavirus-related elements that showed similarity to segmented viral species. By exploring the molecular characteristics of these viral sequences and applying Hidden Markov Models, we were capable of associating these additional segments with a specific taxon. In summary, our study elucidates the complex virome associated with the microbial consortia engaged in cocoa bean fermentation that could contribute to organism/strain selection, altering metabolite production and, consequently, affecting the sensory characteristics of cocoa beans. [ABSTRACT FROM AUTHOR]

Malaysia stands prominently among Asia's key cocoa‐producing countries. In the cocoa season of 2022–2023, Malaysia demonstrated its contribution to the industry, with an estimated production of around 364,000 tonnes of cacao bean grindings. Nonetheless, fungal diseases pose undeniable challenges to the cocoa sector. Extensive sampling conducted between September 2018 and March 2019 across multiple states in Malaysia revealed concerning symptoms of leaf blight and stem canker affecting Theobroma cacao plants. The aim of this study was to identify and characterize fungal species associated with leaf blight and stem canker of T. cacao in Malaysia through morphological, molecular and pathogenicity analyses. Morphological and molecular phylogenetic analyses using multiple DNA regions (rDNA internal transcribed spacer [ITS], TEF1 and TUB2) were performed and identified 40 fungal isolates found in this study as Diaporthe tulliensis (17 isolates), Fusarium solani (seven isolates), Fusarium proliferatum (six isolates) and Neopestalotiopsis clavispora (10 isolates). Pathogenicity tests with mycelial plugs and wound treatments showed that D. tulliensis and N. clavispora were responsible for causing leaf blight whereas D. tulliensis, F. solani and F. proliferatum caused stem canker of T. cacao. The present study provides insights into disease aetiology and symptomatology that may be useful in planning effective disease management for the host plant. [ABSTRACT FROM AUTHOR]

Christophe Boesch, a pioneer in primatology, passed away suddenly on January 14, 2024. His dedication to understanding and protecting chimpanzee societies has inspired research and conservation efforts worldwide. Boesch conducted groundbreaking research on nut-cracking behavior and hunting behavior in chimpanzees, and his studies supported the idea that chimpanzees are cultural beings. He established the Taï Chimpanzee Project and the Ozouga chimpanzee field site, resulting in numerous scientific publications and documentaries. Boesch also played a crucial role in chimpanzee conservation, founding the Wild Chimpanzee Foundation and advocating for the establishment of national parks in West Africa. His legacy will continue through his field sites and the work of the Wild Chimpanzee Foundation. [Extracted from the article]

The physicochemical and biochemical changes during the fermentation of four clones and two native varieties of Theobroma cacao L. were studied. Fermentation was performed in traditional wood cubes. During fermentation, the cotyledon pH decreased, and the temperature increased to more than 10 °C above the ambient temperature (47 °C). The fermentation index (FI) increased in the clones C1, C4, C8, C9, and Guayaquil (G) to close to one at 120 h of fermentation. For the FI of the cocoa Criollo (Cr), a value of 2.5 was proposed according to the spectrophotometric scan performance. The total polyphenol content increased in all the samples from 21 (C8) to 70 (Cr) % in a comparison of the TPC at T0 and T120, respectively. The total flavonoid content increased from 16 (C8) to 51% in Guayaquil (G) during the fermentation period. In the case of the methylxanthines, such as theobromine and caffeine, both quantities decreased. The theobromine content decreased in all the samples from 6 (G) to 31% (C8). The caffeine content decreased in all the samples from 3% in Cr to 25% in C1 and G after fermentation. The antioxidant capability did not change after 120 h of fermentation, and the amount of methylxanthines did not affect the antioxidant potential of the fermented cocoa. The FTIR scan of the fat-free cocoa showed significant differences between the unfermented and fermented beans, and several peaks assigned to carbohydrates and proteins decreased. [ABSTRACT FROM AUTHOR]

Climate change is a growing threat to agriculture globally, with most substantial impacts expected in tropical smallholder systems such as cocoa farms in West Africa. Cocoa agroforestry is widely believed to enhance resilience to climatic extremes due to protection and a favourable microclimate under the shade trees. Morphological traits of many locally used shade tree species and their specific contribution to microclimate for climate-resilient cocoa production remain unclear. Therefore, aboveground morphology and sub canopy microclimate of eight common shade tree species were investigated in cocoa agroforestry systems in the Ahafo region, Ghana. Additionally, the growth of cocoa trees in three different distance zones to the shade tree stem was measured. The eight different shade tree species exhibited considerable variation in their impact on microclimate and cocoa growth. M. indica and M. excelsa allowed lowest light transmission, with the highest microclimatic buffering effect, i.e., reducing vapour pressure deficit and daily fluctuations of temperature and relative humidity. Cocoa trees around M. lucida and F. capensis were the highest in growth, characterized by height and stem diameter. However, a universally superior shade tree species could not be identified implying the need for shade tree diversity allowing various microclimatic conditions within an agroforestry system to spread risk of climate extremes. Cocoa tree growth was more affected by distance to the shade tree than by shade tree species, resulting in enhanced growth with distance to the stem. These findings provide a better understanding of species-related differences on cocoa growing conditions and climate change adaptation strategies. [ABSTRACT FROM AUTHOR]

Cocoa (Theobroma cacao, L.) represents an important market that gained relevance and became an esteemed commodity thanks to cocoa powder, chocolate, and other related products. This work analyzed 59 cocoa powder samples from the European market. Three distinct subgroups were identified: organic or conventional, alkalized or not alkalized, and raw or roasted processing. The impact of the technological process on their pH, color, and compositional traits, as well as their content of biogenic amines and salsolinol, was evaluated. The phenolic fraction was also investigated through both common and emerging methods. The results depict that the influence of the agronomical practices (organic/conventional) did not significantly (p < 0.05) affect the composition of the cocoa powders; similarly, the roasting process was not a determinant of the compounds traced. On the other hand, the alkalinization process greatly impacted color and pH, no matter the cocoa's provenience or obtention or other processes, also resulting in reducing the phenolic fraction of the treated samples. Principal component analysis confirmed that the alkali process acts on pH, color, and phenolic composition but not on the content of other bioactive molecules (biogenic amines and salsolinol). All the samples were safe, while the alkalized powders saw a great reduction in beneficial biocompounds. A novel strategy could be to emphasize on the label whether cocoa powder is non-alkalized to meet the demand for more beneficial products. [ABSTRACT FROM AUTHOR]

The cacao fruit is a rich source of polyphenols, including flavonoids and phenolic acids, which possess significant health benefits. The accurate identification and quantification of these bioactive compounds extracted from different parts of the cacao fruit, such as pods, beans, nibs, and cacao shells, require specific treatment conditions and analytical techniques. This review presents a comprehensive comparison of extraction processes and analytical techniques used to identify and quantify polyphenols from various parts of the cacao fruit. Additionally, it highlights the environmental impact of these methods, exploring the challenges and opportunities in selecting and utilizing extraction, analytical, and impact assessment techniques, while considering polyphenols' yield. The review aims to provide a thorough overview of the current knowledge that can guide future decisions for those seeking to obtain polyphenols from different parts of the cacao fruit. [ABSTRACT FROM AUTHOR]

Energy application potential from the abundant biomass residues is inadequately exploited. Over-dependence on forest trees, its negative environmental impacts, and ever-rising energy costs require alternative production technologies including briquetting. The physico-mechanical and combustion properties of binderless and bindered Alstonia boonei sawdust and Theobroma cacao (cocoa) pod briquettes, carbonized in a steel kiln (at 410±5°C, and a heating rate of 4°C/min from the ambient temperature of 25°C), piston-pressed at 9.0 MPa, were studied. The binders were starch, wax, and clay. Starch-bindered T. cacao pod briquettes recorded the maximum bulk density (640 kg/cm3), while basic density was greatest for sawdust/clay briquette (433 kg/cm3). Sawdust/wax briquette produced much Water Resistance Capacity (76.76%) with safer carbon monoxide (CO) emissions (0.67 ppm). A. boonei sawdust/starch briquettes recorded the greatest calorific value (24.023 MJ/kg), least specific fuel consumption (0.0483 kg/l), and slowest burning rate (0.0005 kg/min). All but T. cacao pod/starch and Sawdust/starch emitted CO below the safe air quality Standard of ≤ 6ppm (24h mean). Binderless sawdust, sawdust/starch and T. cacao pod/starch briquettes recorded 47.86, 20.95 and 11.40 μg/m3 particulate matter (PM2.5) respectively, which are below WHO Air Quality Standard safe for domestic uses. Binderless T. cacao pod produced more harmful CO and PM2.5 than its non-bindered A. boonei sawdust counterpart. Clay-bindered briquettes were the most durable. Briquetting, 'a waste-to-energy technology', enhances bio-residue management for domestic and industrial spaces in the global energy mix. [ABSTRACT FROM AUTHOR]

Sources of resistance are an important control measure for witches' broom disease in cacao. Their identification through quantitative trait loci (QTLs) and genetic diversity analysis would assist breeding programs to develop new cultivars with improved resistance traits. We conducted a systematic review that compiles the main advances in the search for resistance to witches' broom disease. The systematic review on Scopus, Springer Link, PubMed, SciELO, and Web of Science databases followed the Preferred Reporting Items for Systematic Reviews and Meta‐Analysis (PRISMA) guidelines using the State of the Art through Systematic Review (StArt) software. We identified genotypes exhibiting the most significant resistance in phenotypic analysis, along with combinations of crosses that are promising for future studies and cultivar development. Data on genetic diversity indicate a wide possibility of benefits from heterozygosis. Genetic mapping and association studies revealed eight QTLs associated with resistance and several candidate genes with known and unknown biological functions. More comprehensive research of the various sources of resistance to witches' broom disease is crucial for the advance of cacao breeding programs. [ABSTRACT FROM AUTHOR]

A network of agronomists, researchers, and practitioners associated with cacao farming provided open access to their independent field trials across Latin America and the Caribbean (LAC). A centralized dataset was assembled using qualitative and quantitative data from 25 experimental field trials (hereafter referred to as “CacaoFIT”) spanning several LAC agroecosystems. This dataset was used to document the main traits and agroclimatic attributes of the cacao cultivation model being tested within the CacaoFIT network. By synthesizing data from an entire network of cacao trials, this study aimed to highlight specific design features and management practices that may contribute to better cacao farming sustainability. The CacaoFIT network comprises 200 ha of field trials testing over 150 cacao genotypes and set up under dierent shade canopy design, management, and research goals. Small-sized trials were common across Mesoamerica, whereas medium to large-size trials were distinct to South America. Cacao trials were 15 years old (on average) and ranged from 3 to 25 years of establishment. Most cacao trials were managed conventionally (i.e., 55%), while 20% were under organic practices, and the remaining 25% presented both conventional and organic management approaches. Most field trials (ca. 60%) planted an average of 10 international clones or national cultivars at high (1,230–1,500 plants ha−1 ) and medium density (833–1,111 plants ha−1 ). Mixed shade canopies were the dominant agroforestry model, while timber vs. leguminous shade canopies were also common. The diversity and depth of research domains examined across the CacaoFIT network varied widely. Agronomy and agroforestry topics dominated the research agenda across all trials, followed by environmental services domains. Cacao physiology and financial performance were researched to a lesser extent within the network. Five featured field trials from CacaoFIT oered technical guidelines to inform cacao farming within similar contexts. This collaborative work is a scaold to encourage public–private partnerships, capacity building, and data sharing amongst cacao researchers across the tropic [ABSTRACT FROM AUTHOR]

The cocoa tree (Theobroma cacao L.) has seeds that after processing become a valuable agricultural commodity in the world. In Brazil, the state of Pará located in the Eastern Amazon is the main producer, accounting for more than 53% of the national production. Although the region is the largest producer, no studies are found in the literature containing data on the sensory quality of the beans. Thus, the purpose of this study is to establish the sensory profile of Amazonian cocoa from the main cocoa-producing regions of the Eastern Amazon (Lower Tocantins River, Northeast, West, Southeast and Trans-Amazon). The sensory profile was established from the Quantitative Descriptive Analysis (QDA), in addition to using an affective test to verify consumer preference for the chocolates produced. Physical, physicochemical and bioactive compound evaluations were carried out. Beans from different regions had a similar sensory profile; however, it was possible to observe some differences in certain descriptor terms. In the physical evaluation, the samples presented an acceptable commercial standard, and the humidity was within the values established by the legislation. It was found that the post-harvest and/or processing parameters had no influence on the quality attributes of cocoa beans. [ABSTRACT FROM AUTHOR]

Copyright of Revista Foco (Interdisciplinary Studies Journal) is the property of Revista Foco and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Theobroma cacao L. beans have long been used for food and medicinal purposes. However, up to 52%–76% of Theobroma cacao L. fruit comprises its husk, which are regarded as waste and oftentimes thrown away. In fact, cocoa pod husks actually possess a high antioxidant capacity. Antioxidants can be used to fight free radicals that are produced by environmental pollution. In order to simulate the effects of pollution, H2O2 and cigarette smoke extract models were used respectively. However, the antioxidant properties are limited on the skin due to poor penetration. Hence, in order to increase the topical penetration, cocoa pod husk extract (CPHE) was also formulated into niosomes thereafter. CPHE was characterised using total phenolic content, total flavonoid content and three antioxidant assays. After that, cytotoxicity and cytoprotective assay were conducted on HaCaT cells, which represent the skin epidermis. CPHE was then formulated into niosomes subjected to stability and penetration studies for three months. CPHE was shown to contain 164.26 ± 1.067 mg GAE/g extract in total phenolic content and 10.72 ± 0.32 mg QCE/g extract in total flavonoid content. In addition, our results showed that CPHE possesses similar antioxidant capacity through 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay, around eight-fold less through ABTS assay and approximately twelve-fold less through Ferric reducing power (FRAP) assay. The extract also showed comparable cytoprotective properties to that of standard (ascorbic acid). The niosome formulation was also able to increase the penetration compared to unencapsulated extract, as well as possess a good stability profile. This showed that CPHE, in fact, could be repurposed for other uses other than being thrown away as waste. [ABSTRACT FROM AUTHOR]

The southern region of the department of Córdoba, Colombia, in the last ten years has shown growth in the cultivation of cocoa (Theobroma cacao L.) as an alternative to replace illicit crops and improve the quality of life of the families that They have gone through armed conflict. The production system has shown potential given its yields that exceed the national average; However, there is no evidence of the presence of a study that investigates the efficiency in the allocation or investment of resources. The objective of the work was to determine the technical efficiency of this crop with information obtained from a structured survey applied to 158 cocoa farmers in the municipalities of Puerto Libertador, Montelíbano, Tierralta and Valencia. The information obtained contained technical and socioeconomic variables that allowed calculating the current state of the technical efficiency of cocoa cultivation for this region of the country. The technique used was the stochastic frontier through the estimation of parameters by the least squares method to a Cobb Douglas type production function. Although the yields are not low, the results show that the farmer has a technical efficiency of 39%, attributed to underutilization of resources resulting in a production gap. It is concluded that this inefficiency is also associated with social factors such as the advanced age of farmers and low levels of schooling, mainly. [ABSTRACT FROM AUTHOR]

Cocoa cultivation is one of the sectors that most contributes to Ecuador's GDP. The aim of this study is to determine the Land-Use Conflict (UC) for cocoa in 71 cities on the coast of Ecuador. Photointerpretation has been applied to locate the crop and geospatial modeling has been used to analyze Land Use Capacity (LUC) criteria, agroecological requirements and LUC at 1:5,000. Of the total study surface area, 4.65% is occupied by cocoa crops and of this value 66.03% is in adequate use (AU) and 33.97% in LUC, and the category of UC over lightly used is the most frequent with 17.25% of the total surface in LUC. In the coastal region, the province of Guayas has the lowest LUC in contrast to Los Rios; the predominant LUC for the crop is Class III 34.32%. The findings show that the LUC of cocoa has a low concordance with the national Agroecological Zoning (AZ), since this model considers the crop in natural conditions, the main limiting factor is the vegetative wet period and does not take into account whether the crop is present in the territory. The use of national AZ information to establish crops could limit their production, since it has been demonstrated that there are cultivated areas that are not in conflict and that are exploited by farmers. This study is replicable to other crops and scalable to any area. [ABSTRACT FROM AUTHOR]

Aim: Diet, including foods and beverages, affects migraine. Conversely, the influence of migraine therapies on dietary habits is largely unknown. This study aimed at investigating the effects of triptan intake on foods and drinks consumed by adults with migraine with and/or without aura. Methods: An exploratory questionnaire‐based survey took place online between November 2022 and June 2023. Participants were recruited through advertisements shared on social media accounts (e.g., Facebook and Instagram) and seasonal newsletters of three Danish patient associations. In addition, posters and flyers in headache and pain centers at Danish hospitals and private neurological, pain, and physiotherapeutic clinics were utilized. Results: A total of 314 adults with migraine with and/or without aura completed the survey. Among the respondents, 236 individuals (75.2%) regularly used triptans to treat their migraines. Compared with non‐triptan users, individuals using triptans were characterized by significantly more foods and/or drinks triggering migraine (74.2% vs. 56.4%, p = 0.005). Alcoholic beverages and most specifically red wine were overreported as migraine triggers by triptan users (48.3% vs. 21.8%, p < 0.001). In the week preceding the survey, red wine was significantly less consumed by triptan users than non‐triptan users (92.4% vs. 76.9%, p < 0.001). Conclusions: Patients who regularly consume triptans report red wine most frequently as a migraine trigger. Triptan users are characterized by a lower consumption of red wine than non‐triptan users, suggesting that a regular triptan intake may promote an increased sensitivity to red wine‐induced migraine. [ABSTRACT FROM AUTHOR]

Dieback disease is one of the constraints to cocoa production in Indonesia. A newly identified dieback symptom has been observed in cocoa farms in East Luwu since 2015 and later observed in Luwu, Pinrang, Enrekang and Soppeng Regency, South Sulawesi. The potential causal agent identity was determined using morphological characteristics, DNA sequences, and phylogenetic analyses. A total of four fungal isolates out of seven isolates that were recovered from diseased stems morphologically resembled Lasiodiplodia species. ITS and EF1α sequencing confirmed that three of the Lasiodiplodia isolates were Lasiodiplodia theobromae, and one isolate was Lasiodiplodia pseudotheobromae. The aggresiveness of all fungal isolates and control was further determined by a leaf disk assay. Experiments showed that L. theobromae isolate CAS0321 was the most aggressive isolate in a leaf disk assay, while other Lasiodiplodia isolates, Fusarium isolates and Diaporthe isolate, were less aggressive. L. theobromae isolate CAS0321 was further used for a pathogenicity test on cocoa seedlings. Two months after inoculation, L. theobromae isolate CAS0321 caused elongated streaks on seedling stems with dark brown to black streaking of vascular tissues similar to that observed in natural infections. This is the first report of a virulent isolate of L. theobromae associated with cocoa dieback in Sulawesi. [ABSTRACT FROM AUTHOR]

Cacao is a tropical tree species, is highly sensitive to soil water limitations, and its production is strongly affected by global climatic fluctuations. The study of variability in cacao germplasms offers insights into identifying morphological traits associated with drought tolerance. Assessing the genetic parameters of these traits is essential to optimize selection strategies in breeding programs. This study estimated genetic parameters for eighteen cacao progenies and seven parental clones in the field and in greenhouse conditions. The family heritability (h2fam) and individual heritability (h2ind) of pod production during the dry season were calculated as h2fam = 0.30 and h2ind = 0.27. Regarding relative water content (RWC), the highest h2fam value was observed after 180 min of dehydration (0.26). High genetic values were observed for the parental clones CEPEC-2002 and SJ-02, as well as their progenies, in terms of production and RWC in the field. The survival and RWC of greenhouse seedlings were correlated with the evaluations carried out in adult plants in the field (a maximum r of 0.49*** between RWC in the field and survival in the greenhouse and a maximum r of 0.66*** between RWC in both conditions). These findings provide valuable insights to enhance breeding strategies to improve cacao drought tolerance. [ABSTRACT FROM AUTHOR]

Simple Summary: Caffeine is a natural substance found in coffee (Coffea spp.), cocoa (Theobroma cacao), cola (Cola nitida), guaraná (Paullinia cupana), maté (Ilex paraguariensis), and tea plant (Camellia sinensis). These plant species are widely used to produce different drinks and foods, generating a large volume of by-products that may be used for animal feed. This article is part of a broad study that aims to evaluate the safety of using by-products containing caffeine to feed laying hens. In this study, we show that the eggs of laying hens fed caffeine contain this compound together with its primary metabolites: theophylline, theobromine, and paraxanthine. It is essential to highlight that the levels of these compounds found in eggs do not appear to pose any health risk to consumers. This study aimed to determine whether the eggs of laying hens fed caffeine contain this compound and its primary metabolites (theophylline, theobromine, and paraxanthine). Laying hens were distributed into four experimental groups fed rations containing 0 (control), 150, 300, or 450 μg/g of caffeine. For residual analysis, six eggs per group were collected after 4, 8, and 12 weeks. The concentrations of caffeine, theophylline, theobromine, and paraxanthine were determined in the white and yolk of each egg by a high-performance liquid chromatography with photodiode array detector (HPLC-PDA) method. All four compounds were detected in the white and yolk of eggs produced by hens fed caffeine, but their levels in the egg white were approximately twice those in the yolk. The major metabolite found in eggs was theophylline (57.5% of caffeine metabolites in the egg white and 58.5% in the yolk), followed by theobromine (39.9% in the egg white and 41.5% in the yolk), and paraxanthine (2.64% in the egg white and non-detected in the yolk). In summary, caffeine and its metabolites, theophylline, theobromine, and paraxanthine, are transferred to the chicken eggs. [ABSTRACT FROM AUTHOR]

Reinforcement is considered an essential component of many behavioral interventions. However, caregivers may criticize the use of edible reinforcers, particularly those viewed as unhealthy. Still, as evidenced by current attitudes toward the profession, addressing the concerns and criticisms of behavior analytic consumers is paramount. Thus, the purpose of this study was to determine the extent to which edible reinforcers are used within published behavior analytic research. To this end, we analyzed research published in six major behavior analytic journals across 3 years. Results indicate that edible reinforcement was utilized in less than one third of the studies using reinforcement often in combination with other nonedible reinforcers. However, it is important to consider potential negative externalities with the use of edible reinforcement and the need for future research on the use of edible reinforcers in clinical practice and research contexts. [ABSTRACT FROM AUTHOR]

Flavors contribute to the appeal of tobacco products, but less is known about flavors in cigar products. The current study is the first to focus on characterizing the use and perceptions of flavors in cigar products among pregnant women. Pregnant women (N = 124) reported their use, preferences (liking, attractiveness, smoothness, interest), perceptions of harm (general, pregnancy-specific, fetal), and postpartum intention to use eight flavor categories (menthol/mint, spices, fruit, chocolate, alcohol, other beverages, candy/sweet, tobacco). We utilized correspondence analysis of contingency tables to investigate clustering of preferences and perceptions of flavors across the sample, and examined how preferences and perceptions of flavors may differ based on history of cigar use (none vs. lifetime vs. prenatal). Overall, 37% reported never trying cigars, 51% reported lifetime use, and 12% reported prenatal use. Fruit (37%), tobacco (36%), and alcohol (14%) were the most common cigar flavors participants reported ever trying. Correspondence analysis revealed clustering in preferences for alcohol, fruit, and candy flavors compared to other flavors, and revealed lower intentions to use menthol/mint and tobacco flavors compared to other flavors. Participants who reported prenatal cigar use also reported more positive perceptions and greater intentions to use (1) spice and alcohol flavors compared to those who reported lifetime use (ps <.05); and (2) spice, alcohol, fruit, and tobacco cigar flavors compared to participants reporting never using cigars (ps <.04). Regulations to restrict the availability of flavors, especially fruit, spice, and alcohol, may reduce the appeal and use of cigar products in pregnant women. [ABSTRACT FROM AUTHOR]

Agroforestry has the potential to support more resilient livelihoods, soil health, and biodiversity, when compared to monocropping. In Ecuador, the Union of Cacao Peasant Organizations (UNOCACE) has been working with producers since 2016 to transition cacao plots to a dynamic agroforestry system that includes timber and fruit species as well as ground cover in addition to cacao. This study evaluates the application of this model and its implications for agricultural production, livelihoods, and soil health through producer surveys and field-based sampling. The program is resulting in significantly more timber and fruit trees on the cacao plots. Despite this, cacao production and income have not decreased in a significant way, once accounting for the number of producing trees on the plots. In addition, while additional labor is utilized on the dynamic agroforestry plots, after utilizing a matching procedure, no significant difference is seen in total crop productivity for each day of labor utilized. Over time, total productivity could increase for the dynamic agroforestry plots as the companion crops and trees mature. As the program is relatively new and has undergone some changes, additional studies are needed to understand the benefits or challenges, especially for soil health, that might be realized further in the lifespan of the program. [ABSTRACT FROM AUTHOR]

Copyright of Boletín Latinoamericano y del Caribe de Plantas Medicinales y Aromáticas is the property of Universidad de Santiago de Chile and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The γ-irradiation effects on nutritional composition, phenolic compounds and fatty acids profile of cocoa beans were investigated. Raw cocoa bean samples were irradiated using 60Co source at doses of 1.0, 3.0, 5.0, and 7.0 kGy. The examined nutrient contents were moisture, protein, ash and fat contents. A total of 10 phenolic compounds from the screening of 32 standards were identified and quantified by LC-MS/MS, with theobromine (2418.52–3506.95 µg/g) and epicatechin (444.24–1090.98 µg/g) being the most abundant. Overall, the irradiation treatment did not significantly influence the protein and moisture content of cocoa beans. On the other hand, 3 kGy irradiation dose led to a significant decrease in fat content of cocoa bean samples. Furthermore, fatty acid composition changed with increasing the irradiation dose. Gamma irradiation caused a significant increase in saturated fatty acids/unsaturated fatty acids ratio. On the whole, the analysis of phenolic compounds of cocoa beans showed that irradiation influence the phenolic compounds significantly, with a few exceptions. The quantities of epicatechin and luteolin 7 glucoside were higher in raw cocoa beans than in irradiated cocoa beans. Highlights: Gamma irradiation ensures food safety without changing proximate composition of cocoa beans. The major phenolic compounds detected in all cocoa samples were influenced by gamma irradiation. Gamma irradiation significantly influenced the fatty acid composition of cocoa bean oil. [ABSTRACT FROM AUTHOR]

Cocoa is one of important commodities for the economy of Indonesia. However, national exports of the commodity has declined due to decreasing of domestic cocoa production. For enhancing cocoa production, potassium fertilization is required. Potassium (K) is an essential macronutrient in the physiology, anatomy, and yields processes. Anatomically, K is needed in the elongation of meristem tissue as well as for increasing the yields of fruit and seed. The objectives of this research included the study of the effect of K fertilizer dose and determination of optimum K doses on root anatomy development as well as the yield of cocoa pods. This research was conducted on the cocoa plantation of PT. Pagilaran. Applied doses of K fertilization consisted of 0, 150, 300, 450, and 600 g KCl/plant in Randomized Complete Block Design (RCBD) with 5 replications. Observed variables consisted of root anatomy and yield of cocoa pods. The results indicated that the dose of K fertilization significantly influenced both stele and xylem diameters of cocoa roots but insignificantly effected the thickness of cork tissue, phloem diameter, and the thickness of cambium tissue. Moreover, the dose also showed significant effect on the number of beans per pod, the weight of 100 beans, as well as the fresh and dry weight of beans per plant. It was also revealed that the dose showed no significant effect on length, diameter, and weight of the cocoa pods. It implied that K fertilization dose had effect on root anatomical properties and yield of cacao.

[Objetivo] El objetivo fue analizar la composición de aves asociadas a cultivos orgánicos de cacao (Theobroma cacao) manejado debajo de 3 diferentes tipos de cobertura arbórea. [Metodología] Distribuimos 3 puntos de conteo en cada finca, para registrar todas las aves observadas y escuchadas, en muestreos de 5 minutos. Los conteos fueron realizados por triplicado, tanto en las primeras horas de la mañana como al atardecer. La diferencia en la composición de la avifauna entre las fincas fue analizada con la prueba ANOSIM. Las abundancias se transformaron por medio de la función decostand y el método Hellinger del paquete estadístico R-Vegan. La agrupación de las especies entre las plantaciones se efectuó mediante el escalamiento multidimensional no métrico (nMDS) y el índice de Bray-Curtis. La contribución de las especies a la disimilitud entre grupos fue analizada con el módulo SIMPER. Consideramos diferencias estadísticamente significativas cuando P ≤ 0,05. [Resultados] Observamos 428 individuos, clasificados en 49 especies y 23 familias. La finca donde las plantas de cacao crecen en condiciones más sombreadas, debido al desarrollo del dosel, mostró mayor cantidad de especies (34) y de individuos (146). La composición de aves varió significativamente entre las fincas (F(1,8) = 3,22; P < 0,02). La abundancia media de 19 especies (39,6 %) hizo notar diferencias significativas (P < 0,05), al comparar la finca con mayor sombra y menor sombra. [Conclusión] La composición de aves es más compleja en aquellas fincas de cacao orgánico que conservan un mayor desarrollo estructural de los árboles de dosel y que están cerca de bosque en regeneración.

No existe claridad sobre el impacto en la productividad de diversos cultivos agrícolas con Sistemas Agroforestales (SAF). El presente estudio tuvo como objetivo cuantificar el cambio en la productividad de los cultivos café y cacao en fincas con y sin SAF en la Amazonia Peruana. Para ello, empleamos la metodología del emparejamiento de puntaje de propensión. Los resultados muestran un incremento de la productividad para cultivos con cacao, pero una disminución en cultivos con café. Concluimos que amerita generar información y estudios para proponer SAF compatibles con mejoras en productividad a través de acciones conjuntas entre actores.

Background: Theobroma cacao, the cocoa tree, is a tropical crop grown for its highly valuable cocoa solids and fat which are the basis of a 200-billion-dollar annual chocolate industry. However, the long generation time and difficulties associated with breeding a tropical tree crop have limited the progress of breeders to develop high-yielding disease-resistant varieties. Development of marker-assisted breeding methods for cacao requires discovery of genomic regions and specific alleles of genes encoding important traits of interest. To accelerate gene discovery, we developed a gene atlas composed of a large dataset of replicated transcriptomes with the long-term goal of progressing breeding towards developing high-yielding elite varieties of cacao. Results: We describe the creation of the Cacao Transcriptome Atlas, its global characterization and define sets of genes co-regulated in highly organ- and temporally-specific manners. RNAs were extracted and transcriptomes sequenced from 123 different tissues and stages of development representing major organs and developmental stages of the cacao lifecycle. In addition, several experimental treatments and time courses were performed to measure gene expression in tissues responding to biotic and abiotic stressors. Samples were collected in replicates (3–5) to enable statistical analysis of gene expression levels for a total of 390 transcriptomes. To promote wide use of these data, all raw sequencing data, expression read mapping matrices, scripts, and other information used to create the resource are freely available online. We verified our atlas by analyzing the expression of genes with known functions and expression patterns in Arabidopsis (ACT7, LEA19, AGL16, TIP13, LHY, MYB2) and found their expression profiles to be generally similar between both species. We also successfully identified tissue-specific genes at two thresholds in many tissue types represented and a set of genes highly conserved across all tissues. Conclusion: The Cacao Gene Atlas consists of a gene expression browser with graphical user interface and open access to raw sequencing data files as well as the unnormalized and CPM normalized read count data mapped to several cacao genomes. The gene atlas is a publicly available resource to allow rapid mining of cacao gene expression profiles. We hope this resource will be used to help accelerate the discovery of important genes for key cacao traits such as disease resistance and contribute to the breeding of elite varieties to help farmers increase yields. [ABSTRACT FROM AUTHOR]

Cocoa bean acidification, fermentation, and flavour quality are intricately shaped by pulp preconditioning and fermentation treatments. This study investigates the impact of predrying and subsequent fermentation on key parameters such as pH, titratable acidity, fermentation quality (% purity), fermentation index (FI), and overall flavour quality (global quality (GQ)) of cocoa beans. Extended predrying periods and fermentation durations demonstrated a significant enhancement in bean acidification, reflected in the rise of nib pH (6.61–7.33) and the decline in nib acidity (0.023–0.013 meg NaOH/100 g). Notably, the cut test underscored the substantial improvement in % purity, reaching 75.6–99.7% for beans predried at 2–8 hours followed by a 6‐day of fermentation. FI increased significantly from 1.026 to a peak of 1.067, followed by a decline to 0.098 in the control, 6 hours, and 8 hours of predried beans, respectively. Sensory evaluation showed substantial improvement in the GQ (40.1–44.6) of beans predried at 2–8 hours and fermented for 6 days, compared to the control (38.3). In addition, a significantly higher preference was shown for cocoa liquor made from the beans predried for 4‐6 hours and fermented for 6 days. Principal component analysis clustered samples according to the predrying time, fermentation duration, and quality parameters measured. Optimal conditions for enhanced nib acidification, fermentation quality, and flavour attributes were identified at 6‐hour predrying and 6‐day fermentation using the response surface methodology. The study highlights the potential of predrying as a pulp preconditioning technique for enhancing fermentative and final bean quality. [ABSTRACT FROM AUTHOR]

Introduction: Wound healing of tooth extraction is associated with fibroblasts that are produced during the proliferation phase. The use of herbal extracts is currently being investigated by researchers, as it allows avoiding the side effects of synthetic drugs. Cocoa pod husk extract is one of the alternative herbal ingredients that contains active compounds which have antibacterial, antioxidant and anti-inflammatory effects. This study aims to analyze the effects of the cocoa pod husk extract (Theobroma cacao L.) on wound gap closure and collagen density on tooth extraction socket in rats. Materials and methods: Twenty-four Wistar rats with first molar removed in the left mandibular region divided into three groups: negative control group (CMC-Na gel), positive control group (Alvolgyl), and treatment group (100 mg/ ml cocoa pod husk extract gel). Samples were sacrificed on days 7 and 14 after teeth extraction and gel application. The wound gap closure and collagen density was analized using Masson's Trichrome staining, and determined by image raster software and Adobe Photoshop CS 6.0 software. Data was analyzed using One Way ANOVA and post hoc LSD. Results: The treatment group administered with cocoa pod husk 100 mg/ml extract gel showed a higher average value compared to control groups. There were significant differences in wound gap closure (p<0.05), but the increasing collagen density was not significantly different on 14th day (p>0.05). Conclusion: Cocoa pod husk extract (Theobroma cacao L.) potential increasing wound gap closure and collagen density on rat molar tooth extraction socket. [ABSTRACT FROM AUTHOR]