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Introduced pathogens can alter the geographic distribution of susceptible host species. For example, Batrachochytrium dendrobatidis (Bd) is a fungal pathogen that has been linked to the global decline and extinction of numerous amphibian species during the last four decades. A growing number of studies have described the distribution of Bd and susceptible hosts across the globe; however, knowledge on how Bd may shape the climatic niche of susceptible species is still missing. We estimated the effect of Bd on the geographic distribution and niche dynamics of the critically endangered lowland robber frog (Craugastor ranoides) in Costa Rica. We found a reduction of 98% in the geographic range of this species by 1995, following the epizootic outbreaks of Bd that affected Costa Rica in the 1980 and early 1990s. We also quantified niche contraction and found that the species is currently restricted to dry and warm environments that have been considered unsuitable for Bd. Our results contribute to the understanding of how emerging pathogens shape the climatic niches and geographic distribution of susceptible species.

Aim: Regional diversity can increase owing to either the packing of species within regional niche space or the expansion of regional niche space. Yet, the primary factors dictating these dynamics remain poorly understood. Here, we assess the relative influence of current environmental conditions (net primary productivity, NPP) versus historic environmental stability over the Last Glacial Maximum on niche filling patterns of vertebrates (mammals, birds, amphibians and reptiles) in the Australian Wet Tropics (AWTs). Location: Australian Wet Tropics. Taxon: Vertebrates (mammals, birds, amphibians and reptiles). Methods: We measured patterns of niche filling (niche packing vs. niche expansion) as the standardized departure of observed functional diversity (FD) from its null expectation. We fitted spatial models for vertebrates, and for each constituent class (mammals, birds, amphibians and reptiles) separately, to evaluate the relative effects of NPP and environmental stability on species richness and niche filling patterns. Results: Historical environmental stability had a greater effect than NPP on species richness and niche filling patterns. However, the directionality of this effect depended on phylogenetic scale, with vertebrates exhibiting niche packing while each constituent class (except reptiles) exhibited niche expansion with increasing environmental stability. Main Conclusion: Intra-class competition presumably leads to niche differentiation and expansion, whereas the overlap of functional traits among species from different classes leads to niche packing. That environmental stability over millennia is associated with an expanding niche space across multiple vertebrate classes suggests that the accumulation of FD within communities requires long recovery times.

A key component of nature’s contribution to people is aesthetic value.1,2 Charismatic species rally public support and bolster conservation efforts.3,4 However, an insidious aspect to humanity’s valuation of nature is that high value also drives wildlife trade,5,6 which can spearhead the demise of prized species.7–9 Here, we explore the antagonistic roles of aesthetic value in biodiversity conservation by using novel metrics of color to evaluate the aesthetics of the most speciose radiation of birds: passerines (i.e., the perching birds). We identify global color hotspots for passerines and highlight the breadth of color in the global bird trade. The tropics emerge as an epicentre of color, encompassing 91% and 65% of the world’s most diverse and most uniquely colored passerine assemblages, respectively. We show that the pet trade, which currently affects 30% of passerines (1,408/5,266), traverses the avian phylogeny and targets clusters of related species that are uniquely colored. We identify an additional 478 species at risk of future trade based on their coloration and phylogenetic relationship to currently traded species—together totaling 1,886 species traded, a 34% increase. By modeling future extinctions based on species’ current threat status, we predict localized losses of color diversity and uniqueness in many avian communities, undermining their aesthetic value and muting nature’s color palette. Given the distribution of color and the association of unique colors with threat and trade, proactive regulation of the bird trade is crucial to conserving charismatic biodiversity, alongside recognition and celebration of color hotspots.

Continental mountain areas cover15% of global land surface, yet these regions concentrate80% of global terrestrial diversity. One prominent hypothesis to explain this pattern proposes that high mountain diversities could be explained by higher diversification rates in regions of high topographic complexity (HTC). While high speciation in mountains has been detected for particular clades and regions, the global extent to which lineages experience faster speciation in mountains remains unknown. Here we addressed this issue using amphibians as a model system (7,000 species), and we found that families showing high speciation rates contain a high proportion of species distributed in mountains. Moreover, we found that lineages inhabiting areas of HTC speciate faster than lineages occupying areas that are topographically less complex. When comparing across regions, we identified the same pattern in five biogeographical realms where higher speciation rates are associated with higher levels of complex topography. Low-magnitude differences in speciation rates between some low and high complex topographies suggest that high mountain diversity is also affected by low extinction and/or high colonization rates. Nevertheless, our results bolster the importance of mountains as engines of speciation at different geographical scales and highlight their importance for the conservation of global biodiversity.

A heavy toll Trade in wildlife, and their parts, is well recognized for a few key species, such as elephants and rhinos, but it occurs globally, across a wide array of species. Scheffers et al. looked across tens of thousands of vertebrate species and found that one in every five species is affected by trade of some sort. The impacts of trade tend to be concentrated in certain phylogenetic groups, thus the potential for long-term impact on certain lineages is substantial. This analysis allows for prediction of potential for trade where it does not yet occur, facilitating proactive prevention. Science , this issue p. 71

The broadening in species' thermal tolerance limits and breadth from tropical to temperate latitudes is proposed to reflect spatial gradients in temperature seasonality, but the importance of seasonal shifts in thermal tolerances within and across locations is much less appreciated. We performed thermal assays to examine the maximum and minimum critical temperatures (CTmax and CTmin , respectively) of a mosquito community across their active seasons. Mosquito CTmin tracked seasonal shifts in temperature, whereas CTmax tracked a countergradient pattern with lowest heat tolerances in summer. Mosquito thermal breadth decreased from spring to summer and then increased from summer to autumn. We show a temporal dichotomy in thermal tolerances with thermal breadths of temperate organisms in summer reflecting those of the tropics ("tropicalization") that is sandwiched between a spring and autumn "temperatization." Therefore, our tolerance patterns at a single temperate latitude recapitulate classical patterns across latitude. These findings highlight the need to understand the temporal and spatial components of thermotolerance variation better, including plasticity and rapid seasonal selection, and the potential for this variation to affect species responses to climate change. With summers becoming longer and increasing winter nighttime temperatures, we expect increasing tropicalization of species thermal tolerances in both space and time.

Whether or not species track native climatic conditions during invasions (i.e., climate match hypothesis) is fundamental to understand and prevent potential impacts of invasive species. Recent empirical work suggests that climatic mismatches between native and invasive ranges are pervasive. Whether these differences are due to adaptation to new climatic spaces in the invasive range or due to partial filling of the potential climatic space are still subject to debate. Here, we analyze climatic niche dynamics associated with the invasion of the two most common invasive plants in Brazilian semi-arid areas, Prosopis juliflora and Prosopis pallida. These species have been simultaneously introduced in the region, which creates a unique opportunity to compare their niche dynamics during invasion. Given that P. juliflora have a much wider native range size, we expect these species would present different dispersal potentials, which might translate into different unfilling levels. Using an ordination method with kernel smoother and null models, we contrasted climate spaces occupied by each species in both native and invasive ranges. We further used ecological niche models (ENMs) to compare reciprocal predictions of potentially suitable areas. Against our expectation based on differences in native range sizes, climatic niches of P. juliflora and P. pallida overlapped greatly, both in their native and invasive ranges. Our results support niche conservatism during the invasion process. Climatic mismatches among native and invaded ranges were exclusively attributed to unfilling of native climates in the invasive range. Both species showed similar unfilling levels. Likewise, ENMs predicted regions not yet occupied in the invasive range, revealing a potential for further expansion. We discuss colonization time lag and founder effect as potential mechanisms that may have prevented these species to fully occupy their native niches in the invasive range.

Introduced pathogens can alter the geographic distribution of susceptible host species. For example, Batrachochytrium dendrobatidis (Bd) is a fungal pathogen that has been linked to the global decline and extinction of numerous amphibian species during the last four decades. A growing number of studies have described the distribution of Bd and susceptible hosts across the globe; however, knowledge on how Bd may shape the climatic niche of susceptible species is still missing. We estimated the effect of Bd on the geographic distribution and niche dynamics of the critically endangered lowland robber frog (Craugastor ranoides) in Costa Rica. We found a reduction of 98% in the geographic range of this species by 1995, following the epizootic outbreaks of Bd that affected Costa Rica in the 1980 and early 1990s. We also quantified niche contraction and found that the species is currently restricted to dry and warm environments that have been considered unsuitable for Bd. Our results contribute to the understanding of how emerging pathogens shape the climatic niches and geographic distribution of susceptible species.

Many mechanisms have been hypothesized to explain Bergmann’s rule - the correlation of body size with latitude. However, it is not feasible to assess the contribution of hypothesised mechanisms by experimental manipulation or statistical correlation. Here, we evaluate two of the principal hypothesised mechanisms, related to thermoregulation and resource availability, using structured experiments in a mechanistic global ecosystem model. We simulated the broad structure of assemblages and ecosystems using the Madingley model, a mechanistic General Ecosystem Model (GEM). We compared emergent modelled biogeographic patterns in body mass to empirical patterns for mammals and birds. We then explored the relative contribution of thermoregulation and resource availability to body mass clines by manipulating the model’s environmental gradients. Madingley produces body size gradients that are in broad agreement with empirical estimates. Thermoregulation and resource availability were both important controls on body mass for endotherms, but only temperature for ectotherms. Our results suggest that seasonality explains animal body mass patterns through a complex set of mechanisms. Process-based GEMs generate broadly realistic biogeographic body mass patterns. Ecologists can use them in novel ways: to explore causality, or for generating and testing hypotheses for large-scale, emergent ecological patterns. At the same time, macroecological patterns are useful for evaluating mechanistic models. Iteratively developing GEMs, and evaluating them against macroecological patterns, could generate new insights into the complex causes of such patterns.

International audience; There is an increasing interest in measuring loss of phylogenetic diversity and evolutionary distinctiveness which together depict the evolutionary history of conservation interest. Those losses are assessed through the evolutionary relationships between species and species threat status or extinction probabilities. Yet, available information is not always sufficient to quantify the threat status of species that are then classified as data deficient. Data-deficient species are a crucial issue as they cause incomplete assessments of the loss of phylogenetic diversity and evolutionary distinctiveness. We aimed to explore the potential bias caused by data-deficient species in estimating four widely used indices: HEDGE, EDGE, PDloss, and Expected PDloss. Second, we tested four different widely applicable and multitaxa imputation methods and their potential to minimize the bias for those four indices. Two methods are based on a best-vs. worst-case extinction scenarios, one is based on the frequency distribution of threat status within a taxonomic group and one is based on correlates of extinction risks. We showed that data-deficient species led to important bias in predictions of evolutionary history loss (especially high underestimation when they were removed). This issue was particularly important when data-deficient species tended to be clustered in the tree of life. The imputation method based on correlates of extinction risks, especially geographic range size, had the best performance and enabled us to improve risk assessments. Solving threat status of DD species can fundamentally change our understanding of loss of phyloge-netic diversity. We found that this loss could be substantially higher than previously found in amphibians, squamate reptiles, and carnivores. We also identified species that are of high priority for the conservation of evolutionary distinctiveness.

Aim Whether the gradients of global diversity conform to equilibrium or non-equilibrium dynamics remains an unresolved question in ecology and evolution. Here, we evaluate four prominent hypotheses which invoke either equilibrium (more individuals, niche diversity) or non-equilibrium dynamics (diversification rate, evolutionary time) to explain species richness and functional diversity of mammals worldwide. Location Global. Methods We combine structural equation modelling with simulations to examine whether species richness and functional diversity are in equilibrium with environmental conditions (climate, productivity) or whether they vary with non-equilibrium factors (diversification rates, evolutionary time). We use the newest and most inclusive phylogenetic, distributional and trait data for mammals. Results We find that species richness and functional diversity are decoupled across multiple regions of the world. While species richness correlates closely with environmental conditions, functional diversity depends mostly on non-equilibrium factors (evolutionary time to overcome niche conservatism). Moreover, functional diversity plateaus with species richness, such that species-rich regions (especially the Neotropics) host many species that are apparently functionally redundant. Main conclusions We conclude that species richness depends on environmental factors while functional diversity depends on the evolutionary history of the region. Our work further challenges the classic notion that highly productive regions host more species because they offer a great diversity of ecological niches. Instead, they suggest that productive regions offer more resources, which allow more individuals, populations and species to coexist within a region, even when the species are apparently functionally redundant (the more individuals hypothesis). Together these findings demonstrate how ecological (the total amount of resources) and evolutionary factors (time to overcome niche conservatism) might have interacted to generate the striking diversity of mammals and their life histories.

Assemblage similarity decays with geographic distance-a pattern known as the distance-decay relationship. While this pattern has been investigated for a wide range of organisms, ecosystems and geographical gradients, whether these changes vary more cryptically across different forest strata (from ground to canopy) remains elusive. Here, we investigated the influence of ground vs. arboreal assemblages to the general distance-decay relationship observed in forests. We seek to explain differences in distance-decay relationships between strata in the context of the vertical stratification of assemblage composition, richness and abundance. We surveyed for a climate-sensitive model organism, amphibians, across vertical rainforest strata in Madagascar. For each tree, we defined assemblages of ground-dwelling, understory, or canopy species. We calculated horizontal distance-decay in similarity across all trees, and across assemblages of species found in different forest strata (ground, understory and canopy). We demonstrate that within stratum comparisons exhibit a classic distance-decay relationship for canopy and understory communities but no distance-decay relationships for ground communities. We suggest that differences in horizontal turnover between strata may be due to local scale habitat and resource heterogeneity in the canopy, or the influence of arboreal traits on species dispersal and distribution. Synthesis. Biodiversity patterns in horizontal space were not consistent across vertical space, suggesting that canopy fauna may not play by the same set of "rules" as their conspecifics living below them on the ground. Our study provides compelling evidence that the above-ground amphibian assemblage of tropical rainforests is the primary driver of the classical distance-decay relationship.

Current ecological and evolutionary research are increasingly moving from species- to trait-based approaches because traits provide a stronger link to organism’s function and fitness. Trait databases covering a large number of species are becoming available, but such data remains scarce for certain groups. Amphibians are among the most diverse vertebrate groups on Earth, and constitute an abundant component of major terrestrial and freshwater ecosystems. They are also facing rapid population declines worldwide, which is likely to affect trait composition in local communities, thereby impacting ecosystem processes and services. In this context, we introduce AmphiBIO, a comprehensive database of natural history traits for amphibians worldwide. The database releases information on 17 traits related to ecology, morphology and reproduction features of amphibians. We compiled data from more than 1,500 literature sources, and for more than 6,500 species of all orders (Anura, Caudata and Gymnophiona), 61 families and 531 genera. This database has the potential to allow unprecedented large-scale analyses in ecology, evolution, and conservation of amphibians. Machine-accessible metadata file describing the reported data (ISA-Tab format)

Understanding the role plant species play on ecosystems is fundamental for restoration programs, particularly in semi-arid areas because land-use intensification combined with critical droughts has resulted in widespread desertification. Here, we evaluate 15 species of native trees for restoring degraded areas in the Brazilian semi-arid region on the basis of the suitability of their functional traits to ecosystem multifunctionality. To do so, we performed a short-term greenhouse experiment using saplings to estimate the importance of above- and below-ground traits in modulating soil and water quality. Above-ground traits yielded stronger effects on soil and water quality than below-ground traits. Above-ground biomass held the strongest positive effect on ecosystem multifunctionality, being the most beneficial attribute for the soil functions assessed. Thus, plants holding high biomass production should be preferentially selected for restoration in semi-arid regions.