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Species of the ciliate genus Urotricha are key players in freshwater plankton communities. In the pelagial of lakes, about 20 urotrich species occur throughout an annual cycle, some of which play a pivotal role in aquatic food webs. For example, during the phytoplankton spring bloom, they consume a remarkable proportion of the algal production. In ecological studies, urotrich ciliates are usually merely identified to genus rank and grouped into size classes. This is unsatisfying considering the distinct autecological properties of individual species and their specific spatial and temporal distribution patterns. As a basis for future research, we characterized in detail four common urotrich morphotypes, i.e., specimens identified as U. furcata and tentatively as U. agilis , U. pseudofurcata , and U. castalia , using state-of-the-art methods. We used an integrative polyphasic approach, in which morphological studies (in vivo observation, silver staining methods, scanning electron microscopy) were linked with a molecular approach exploiting four different gene fragments as taxonomic DNA barcodes with different resolution potential (SSU rDNA, ITS-1, ITS-2, hypervariable V4 and V9 regions of the SSU rDNA). We shed light on the diversity of urotrich ciliates as well as on their global distribution patterns, and annual cycles. Additionally, we coupled individual species occurrences and environmental parameters, and subsequently modeled the distribution and occurrence, using logistic regressions. Furthermore, for one strain putatively identified as U. castalia , we ascertained the optimal cultivation media and food preferences. Thereby, our comprehensive view on these important freshwater ciliates that frequently occur in environmental high throughput sequencing datasets worldwide will allow future studies to better exploit protistan plankton data from lakes. [ABSTRACT FROM AUTHOR]

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We analysed and characterized the cyanobacteria in microbialites of Alchichica crater lake over a depth gradient, from 3 to 30 m. A polyphasic approach was followed using morphometry, optical and epifluorescence microscopy, and molecular methods. Regions V3–V4 of the 16S rRNA conserved for cyanobacteria were amplified and used for clone library construction. Independently, a NGS library was constructed using the V4 region of the 16S rRNA. To complement the analysis, eight monocultures of cyanobacteria were isolated from microbialites, which were also characterized by microscopy and 16S rRNA sequencing. In total, we described 18 genera of cyanobacteria isolated from microbialites of Alchichica crater lake. The distribution pattern suggests that on the surface there were mostly Nostocales and filamentous Synechococcales, while at depth we found single-celled Synechococcales. Pleurocapsales and Chroococcales were found at all depths, increasing in abundance at 20 and 30 m. [ABSTRACT FROM AUTHOR]

The cytochrome P450 (CYP) superfamily of monooxygenase enzymes play important roles in the metabolism of molecules which contain heterocyclic, aromatic functional groups. Here we study how oxygen- and sulfur-containing heterocyclic groups interact with and are oxidized using the bacterial enzyme CYP199A4. This enzyme oxidized both 4-(thiophen-2-yl)benzoic acid and 4-(thiophen-3-yl)benzoic acid almost exclusively via sulfoxidation. The thiophene oxides produced were activated towards Diels-Alder dimerization after sulfoxidation, forming dimeric metabolites. Despite X-ray crystal structures demonstrating that the aromatic carbon atoms of the thiophene ring were located closer to the heme than the sulfur, sulfoxidation was still favoured with 4-(thiophen-3-yl)benzoic acid. These results highlight a preference of this cytochrome P450 enzyme for sulfoxidation over aromatic hydroxylation. Calculations predict a strong preference for homodimerization of the enantiomers of the thiophene oxides and the formation of a single major product, in broad agreement with the experimental data. 4-(Furan-2-yl)benzoic acid was oxidized to 4-(4'-hydroxybutanoyl)benzoic acid using a whole-cell system. This reaction proceeded via a γ-keto-α,β-unsaturated aldehyde species which could be trapped in vitro using semicarbazide to generate a pyridazine species. The combination of the enzyme structures, the biochemical data and theoretical calculations provides detailed insight into the formation of the metabolites formed from these heterocyclic compounds., (© 2023 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)

Thaumarchaeota and Thermoplasmatota are the most abundant planktonic archaea in the sea. Thaumarchaeota contain tetraether lipids as their major membrane lipids, but the lipid composition of uncultured planktonic Thermoplasmatota representatives remains unknown. To address this knowledge gap, we quantified archaeal cells and ether lipids in open ocean depth profiles (0–200 m) of the North Pacific Subtropical Gyre. Planktonic archaeal community structure and ether lipid composition in the water column partitioned into two separate clusters: one above the deep chlorophyll maximum, the other within and below it. In surface waters, Thermoplasmatota densities ranged from 2.11 × 106 to 6.02 × 106 cells/L, while Thaumarchaeota were undetectable. As previously reported for Thaumarchaeota, potential homologs of archaeal tetraether ring synthases were present in planktonic Thermoplasmatota metagenomes. Despite the absence of Thaumarchaeota in surface waters, measurable amounts of intact polar ether lipids were found there. Based on cell abundance estimates, these surface water archaeal ether lipids contributed only 1.21 × 10–9 ng lipid/Thermoplasmatota cell, about three orders of magnitude less than that reported for Thaumarchaeota cells. While these data indicate that even if some tetraether and diether lipids may be derived from Thermoplasmatota, they would only comprise a small fraction of Thermoplasmatota total biomass. Therefore, while both MGI Thaumarchaeota and MGII/III Thermoplasmatota are potential biological sources of archaeal GDGTs, the Thaumarchaeota appear to be the major contributors of archaeal tetraether lipids in planktonic marine habitats. These results extend and confirm previous reports of planktonic archaeal lipid sources, and further emphasize the need for Thermoplasmatota cultivation, to better characterize the membrane lipid constituents of marine planktonic Thermoplasmatota, and more precisely define the sources and patterns of archaeal tetraether lipid distributions in marine plankton. [ABSTRACT FROM AUTHOR]

Water-miscible metalworking fluids (MWFs) are used in metal removal and forming operations. For end use, formulation concentrates are diluted in water, providing conditions conducive to microbial growth and metabolism and potentially causing fluid biodeterioration and microbiologically influenced corrosion. Microorganisms in the environment are highly diverse, and bacteria and fungi have been recovered from these fluids at population densities of >106 CFU mL−1. Thus, to control microbial bioburdens in MWFs, microbicides are often incorporated into MWF formulations, used as tankside additives, or both. Some microbicides are suspected as being responsible for adverse health effects. Consequently, their usage has been restricted in recently adopted regulations. Given the limited number of microbicides currently approved for use in MWFs, alternative microbial contamination control strategies are needed. Some of these strategies have already been employed in the market. Studies on microorganisms in MWFs are often hindered by the complexity of the media, especially when trying to examine in-use samples. Historically, microbiological analyses were primarily based on cultivation assays using nutrient-rich media. These analyses have severe disadvantages, and the adoption of more reliable test methods is of utmost importance. Here, we review MWF microbiology, discussing possible consequences and options for both control and condition monitoring testing. [ABSTRACT FROM AUTHOR]

Interest in extracting mineral resources from the seafloor through deep‐sea mining has accelerated in the past decade, driven by consumer demand for various metals like zinc, cobalt, and rare earth elements. While there are ongoing studies evaluating potential environmental impacts of deep‐sea mining activities, these focus primarily on impacts to animal biodiversity. The microscopic spectrum of seafloor life and the services that this life provides in the deep sea are rarely considered explicitly. In April 2018, scientists met to define the microbial ecosystem services that should be considered when assessing potential impacts of deep‐sea mining, and to provide recommendations for how to evaluate and safeguard these services. Here, we indicate that the potential impacts of mining on microbial ecosystem services in the deep sea vary substantially, from minimal expected impact to loss of services that cannot be remedied by protected area offsets. For example, we (1) describe potential major losses of microbial ecosystem services at active hydrothermal vent habitats impacted by mining, (2) speculate that there could be major ecosystem service degradation at inactive massive sulfide deposits without extensive mitigation efforts, (3) suggest minor impacts to carbon sequestration within manganese nodule fields coupled with potentially important impacts to primary production capacity, and (4) surmise that assessment of impacts to microbial ecosystem services at seamounts with ferromanganese crusts is too poorly understood to be definitive. We conclude by recommending that baseline assessments of microbial diversity, biomass, and, importantly, biogeochemical function need to be considered in environmental impact assessments of deep‐sea mining. [ABSTRACT FROM AUTHOR]

With firm data from the Spanish Community Innovation Survey (CIS) for the period 2003–2014, we find a positive and significant effect of innovation in the demand for labor when firms introduce product and process innovations in the same time period. The effect of innovation on the demand for labor is countercyclical, higher in the recession, after 2008, than in the expansion, before 2008, but the probability that firms innovate in product and process is counter-cyclical, i.e. lower in the recession. Altogether, the elasticity of the demand for labor to the probability that firms introduce product and process innovations remains stable throughout the sample period, at around 0.035. Innovation contributes to stabilize average employment during the cycle, more so when the innovation is in product, alone or together with process, than when it is only in process. These results are broadly consistent with product and process innovations shifting firms' demand and production functions upwards, but differentially in expansions (less product market competition) than in contractions (more competition). [ABSTRACT FROM AUTHOR]

Modern hydrated Mg rich stromatolites are actively growing along the shallow shorelines of Lake Salda (SW Turkey). An integrated approach involving isotopic, mineralogical, microscopic, and organic/geochemical techniques along with culture-independent molecular methods were applied to various lake samples to assess the role of microbial processes on stromatolite formation. This study further explores the biosignature preservation potential of fossil stromatolites by comparing with textures, lipid profiles and isotopic composition of the modern stromatolites. Similar lipid profile and δ13C isotope values in active and fossil stromatolites argue that CO2 cycling delicately balanced between photosynthetic and heterotrophic (aerobic) activity as in the active ones may have regulated stromatolite formation in the lake. A decrease in the exopolymeric substances (EPS) profile of the mat and concurrent hydromagnesite precipitation imply a critical role for EPS in the formation of stromatolite. Consistently, a discrete, discontinuous lamination and clotted micropeloidal textures with cyanobacterial remnants in the fossil stromatolites likely refer to partial degradation of EPS, creating local nucleation sites and allowing precipitation of hydrated Mg minerals and provide a link to the active microbial mat in the modern stromatolites. Our results for the first time provide strong evidence for close coupling of cyanobacterial photosynthesis and aerobic heterotrophic respiration on hydromagnesite textures involved in the stromatolite formation of Lake Salda. The creation of photosynthesis induced high-pH conditions combined with a change in the amount and properties of the EPS and the repetition of these processes over time seems to be a possible pathway for stromatolite growth in the lake. Understanding these microbial symbioses and their mineralized records may provide new insights on the formation mechanism of Mg-rich carbonates not only for terrestrial geological records but also for planetary bodies like Mars, where hydrated Mg-carbonate deposits have been identified in possible paleolake deposits at Jezero crater, the landing site of the NASA Mars 2020 rover. [ABSTRACT FROM AUTHOR]

Planktonic dinoflagellate records for New Zealand are substantial due to intense monitoring programmes that have taken place on behalf of New Zealand's biotoxin regulators and the shellfish industry since 1993. At that time a Karenia bloom caused human illnesses and shellfish harvesting ceased until monitoring was instigated. Phytoplankton records are based on morphological identification using light microscopy but are backed up by government funded research programmes which implement techniques such as electron microscopy, DNA sequencing, molecular detection assays and high throughput sequencing of environmental DNA. This checklist will support management of aquaculture industries, recreational shellfish harvests and environmental health initiatives. Some genera are considered benthic or epiphytic, but have lengthy planktonic life stages. Forty-five genera in the class Dinophyceae Fritsch are reported: Akashiwo, Alexandrium, Amphidinium, Amylax, Azadinium, Biecheleria, Bysmatrum, Cachonina, Cochlodinium (synonym: Margalefidinium), Coolia, Dicroerisma, Dinophysis, Diploneis, Diplopsalis, Fragilidium, Glenodinium, Gonyaulax, Gymnodinium, Gyrodinium, Heterocapsa, Karenia, Karlodinium, Lepidodinium, Lingulodinium, Margalefidinium, Ostreopsis, Oxyphysis, Pelagodinium, Pentapharsodinium, Phalacroma, Podolampas, Polarella, Polykrikos, Prorocentrum, Protodinium, Protoodinium, Protoperidinium, Pseliodinium, Scrippsiella, Takayama, Togula, Torodinium, Tripos, Vulcanodinium, Wolosynska. Other genera belonging to the Infraphylum Dinoflagellata also occur in New Zealand waters. They are not in the list but include Noctiluca, Pronoctiluca and Spatulodinium (Class: Noctilucophyceae) and Oxyrrhis (Class: Oxyrrhidophyceae). [ABSTRACT FROM AUTHOR]

We accessed the culturable mycobiota present in marine sediments at different depths in Antarctica Ocean. Acremonium fusidioides, Penicillium allii-sativi, Penicillium chrysogenum, Penicillium palitans, Penicillium solitum, and Pseudogymnoascus verrucosus were identified. Penicillium allii-sativi was the dominant species. At least one isolate of each species was capable to present antifungal, trypanocidal, leishmanicidal, antimalarial, nematocidal, or herbicidal activities. Penicillium produced extracts with strong trypanocidal and antimalarial activities, and the extracts of P. solitum and P. chrysogenum demonstrated strong antimalarial activities. Acremonium fusidioides and P. verrucosus displayed strong selective herbicidal properties. The 1H NMR signals for extracts of A. fusidioides, P. chrysogenum, and P. solitum indicated the presence of highly functionalized secondary metabolites, which may be responsible for the biological activities detected. In the deep marine Antarctic sediments, we detected fungal assemblages in which the Penicillium species were found to be dominant and demonstrated capabilities to survive and/or colonise that poly-extreme habitat. Penicillium being a polyextremophile Antarctic species, exhibited strong biological activities and the presence of aromatic compounds in its extracts may indicate that they are wild ancient strains with high genetic and biochemical potentials that enable them to produce bioactive compounds which can be researched in further studies and used in the chemotherapy of neglected tropical diseases as well as in agriculture. [ABSTRACT FROM AUTHOR]

The Ilumetsa site, in Estonia, consists of two round, rimmed structures that are 725 m apart. The structures are listed as proven impact craters in the Impact Earth database, despite lack of commonly accepted, unequivocal proof of extraterrestrial collision identified at this location. We excavated trenches though the Ilumetsa Large and Ilumetsa Small structures and found small pieces of charcoal within the putative proximal ejecta in both structures, in a similar geological setting as previously identified charcoal in Kaali (Losiak et al. 2016) and Morasko craters (see Szokaluk et al. 2019). Our 14C dating of charcoal allowed us to conclude that these crater‐like features formed simultaneously between 7170 and 7000 cal. years bp, about 7 ka after deglaciation of this area. A ground penetrating radar survey of the nearby bog shows that no additional Ilumetsa structures bigger than 40 m exist. Geochemical studies of the ejecta and a search using a metal detector did not reveal any clear indication of extraterrestrial material. This suggests Ilumetsa may have been formed by an impact of stony‐iron or stony body, which got significantly weathered in a wet‐temperate climate. The mystery of the formation of the structures at Ilumetsa remains; however, due to significant circumstantial evidence discussed herein, we are confident to call it a "probable" impact site. [ABSTRACT FROM AUTHOR]

Cyanobacteria are common in symbiotic relationships with diverse multicellular organisms (animals, plants, fungi) in terrestrial environments and with single-celled heterotrophic, mixotrophic, and autotrophic protists in aquatic environments. In the sunlit zones of aquatic environments, diverse cyanobacterial symbioses exist with autotrophic taxa in phytoplankton, including dinoflagellates, diatoms, and haptophytes (prymnesiophytes). Phototrophic unicellular cyanobacteria related to Synechococcus and Prochlorococcus are associated with a number of groups. N2-fixing cyanobacteria are symbiotic with diatoms and haptophytes. Extensive genome reduction is involved in the N2-fixing endosymbionts, most dramatically in the unicellular cyanobacteria associated with haptophytes, which have lost most of the photosynthetic apparatus, the ability to fix C, and the tricarboxylic acid cycle. The mechanisms involved in N2-fixing symbioses may involve more interactions beyond simple exchange of fixed C for N. N2-fixing cyanobacterial symbioses are widespread in the oceans, even more widely distributed than the best-known free-living N2-fixing cyanobacteria, suggesting they may be equally or more important in the global ocean biogeochemical cycle of N.Despite their ubiquitous nature and significance in biogeochemical cycles, cyanobacterium-phytoplankton symbioses remain understudied and poorly understood. [ABSTRACT FROM AUTHOR]

Recent advancements in next-generation sequencing (NGS) have provided the foundation for modern studies into the composition of microbial communities. The use of these NGS methods allows for the detection and identification of ('difficult-to-culture') microorganisms using a culture-independent strategy. In the field of routine clinical diagnostics however, the application of NGS is currently limited to microbial strain typing for epidemiological purposes only, even though the implementation of NGS for microbial community analysis may yield clinically important information. This lack of NGS implementation is due to many different factors, including issues relating to NGS method standardization and result reproducibility. In this review article, the authors provide a general introduction to the most widely used NGS methods currently available (i.e., targeted amplicon sequencing and shotgun metagenomics) and the strengths and weaknesses of each method is discussed. The focus of the publication then shifts toward 16S rRNA gene NGS methods, which are currently the most cost-effective and widely used NGS methods for research purposes, and are therefore more likely to be successfully implemented into routine clinical diagnostics in the short term. In this respect, the experimental pitfalls and biases created at each step of the 16S rRNA gene NGS workflow are explained, as well as their potential solutions. Finally, a novel diagnostic microbiota profiling platform ('MYcrobiota') is introduced, which was developed by the authors by taking into consideration the pitfalls, biases, and solutions explained in this article. The development of the MYcrobiota, and future NGS methodologies, will help pave the way toward the successful implementation of NGS methodologies into routine clinical diagnostics. [ABSTRACT FROM AUTHOR]

The paper reports on a synthesis of pollen analyses and main archaeobotanical studies carried out on Early, Middle and Late Holocene sites from Sai Island in the Nile River (ancient Upper Nubia, present northern Sudan). Multidisciplinary archaeological studies focused on the transitions from hunting-fishing-gathering to pastoralism and later to agro-pastoralism in this area. New palynological data were obtained from two sites located on the eastern side of the island: an Early Holocene occupational level of a 'Khartoum Variant' foraging site (8-B-10C, Level 2; c. 7600-7200 BC), and a Middle/Late Holocene site dating to the Pre-Kerma/Kerma period (8-B-10A; the later phase is dated c. 1800-1600 BC). These data integrate the results obtained from two other sites located on the western side of the island (sites 8-B-76 and 8-B-81). Despite the poor preservation of pollen, the integration of data from the studied sites provides information on the environmental changes and potential for plant exploitation in the eastern Sahelian-Saharan region. A substantial environmental diversity between the west and east sides of Sai Island emerges, revealing that in the late Early Holocene and first part of the Middle Holocene the land near the river was characterised by a mosaic of habitats, with dramatic floods on the eastern side and seasonal dried-up areas on the western side. This region supplied water even during the dry climatic phases and provided humans with mosaic habitats within short distances, giving access to plants (useful for food and other purposes) which lived in swamps and marshes, wooded savannahs, grasslands or desert savannahs. [ABSTRACT FROM AUTHOR]

This paper builds upon Bartelsman, Lopez-Garcia, and Presidente (2018) and provides empirical evidence on the cyclical features of labour reallocation in a sample of European Union (EU) countries over the Great Recession and the slow recovery. The analysis makes use of cross-country micro-aggregated data on firm dynamics and productivity from release 6 of the ECB CompNet database. While productivity-enhancing reallocation generally is counter-cyclical, with a stronger effect providing a silver lining in downturns, it was weaker during the Great Recession in the EU, but reverted back to more normal patters in the most recent years. [ABSTRACT FROM AUTHOR]

An intercomparison study has been carried out on the analysis of inorganic nutrients at sea following the operation of two nutrient analysers simultaneously on the GO-SHIP A02 trans-Atlantic survey in May 2017. Both instruments were Skalar San ++ Continuous Flow Analyzers, one from the Marine Institute, Ireland and the other from Dalhousie University, Canada, each operated by their own laboratory analysts following GO-SHIP guidelines while adopting their existing laboratory methods. There was high comparability between the two data sets and vertical profiles of nutrients also compared well with those collected in 1997 along the same A02 transect by the World Ocean Circulation Experiment. The largest differences between data sets were observed in the low-nutrient surface waters and results highlight the value of using three reference materials (low, middle and high concentration) to cover the full range of expected nutrients and identify bias and non-linearity in the calibrations. The intercomparison also raised some interesting questions on the comparison of nutrients analysed by different systems and a number of recommendations have been suggested that we feel will enhance the existing GO-SHIP guidelines to improve the comparability of global nutrient data sets. A key recommendation is for the specification of clearly defined data quality objectives for oceanic nutrient measurements and a flagging method for reported data that do not meet these criteria. The A02 nutrient data set is currently available at the National Oceanographic Data Centre of Ireland: 10.20393/CE49BC4C-91CC-41B9-A07F-D4E36B18B26F and 10.20393/EAD02A1F-AAB3-4F4E-AD60-6289B9585531. [ABSTRACT FROM AUTHOR]

De Beers kimberlite mine operations in South Africa (Venetia and Voorspoed) and Canada (Gahcho Kué, Victor, and Snap Lake) have the potential to sequester carbon dioxide (CO2) through weathering of kimberlite mine tailings, which can store carbon in secondary carbonate minerals (mineral carbonation). Carbonation of ca. 4.7 to 24.0 wt% (average = 13.8 wt%) of annual processed kimberlite production could offset 100% of each mine site's carbon dioxide equivalent (CO2e) emissions. Minerals of particular interest for reactivity with atmospheric or waste CO2 from energy production include serpentine minerals, olivine (forsterite), brucite, and smectite. The most abundant minerals, such as serpentine polymorphs, provide the bulk of the carbonation potential. However, the detection of minor amounts of highly reactive brucite in tailings from Victor, as well as the likely presence of brucite at Venetia, Gahcho Kué, and Snap Lake, is also important for the mineral carbonation potential of the mine sites. [ABSTRACT FROM AUTHOR]

Summary: Polyamines are primordial, small organic polycations present in almost all cells, but their roles in bacteria are poorly understood. sym‐Homospermidine is the dominant polyamine in the filamentous, N2‐fixing, heterocyst‐forming cyanobacterium Anabaena sp. PCC 7120. Synthesis of homospermidine was dependent on speA (encoding arginine decarboxylase), speB (agmatinase) and speY (deoxyhypusine synthase homologue), which in bacteria is an unprecedented pathway. Inactivation of any of these genes impaired diazotrophic growth. Heterocyst differentiation in the speA mutant was blocked at an early step, after induction of the regulatory gene hetR but before production of heterocyst‐specific glycolipids (HGL). In contrast, the speY mutant produced HGL and showed slow diazotrophic growth. Analysis of fusions to green fluorescent protein revealed that SpeA (like SpeB previously described) accumulates at higher levels in vegetative cells than in heterocysts, and that SpeY accumulates in vegetative cells but also at significant levels in heterocysts. The homospermidine biosynthetic pathway is therefore active primarily in vegetative cells but the last step can be completed in heterocysts. Our findings indicate an important role for polyamines in the diazotrophic biology of Anabaena. Furthermore, inactivation of a gene cluster (potADB) encoding a polyamine ABC transporter disrupted diazotrophic growth, corroborating the importance of polyamine homeostasis in Anabaena. Different pathways for polyamine biosynthesis have evolved in different organisms. The heterocyst‐forming cyanobacterium Anabaena synthesizes the polyamine sym‐homospermidine through a pathway that involves arginine decarboxylase (SpeA), agmatinase (SpeB) and a deoxyhypusine synthase‐like enzyme (SpeY). Production of a polyamine (mainly homospermidine) is needed for heterocyst differentiation and expression of nitrogenase activity in Anabaena. As shown with GFP fusions, the pathway is in part differentially expressed between vegetative cells and heterocysts (indicated by arrows in the micrograph). [ABSTRACT FROM AUTHOR]

Abstract: Solving issues of intersource discrimination in archaeological obsidian is a recurring problem in geoarchaeological investigation, particularly since the number of known sources of archaeological obsidian worldwide has grown nearly exponentially in the last few decades, and the complexity of archaeological questions asked has grown equally so. These two parallel aspects of archaeological investigation have required more exacting understanding of the geological relationship between sources and the more accurate analysis of these sources of archaeological obsidian. This is particularly the case in the North American Southwest where the frequency of archaeological investigation is some of the highest in the world, and the theory and method used to interpret that record has become increasingly nuanced. Here, we attempt to unravel the elemental similarity of archaeological obsidian in the Mogollon‐Datil volcanic province of southwestern New Mexico where some of the most important and extensively distributed sources are located and the elemental similarity between the sources is great even though the distance between the sources is large. Uniting elemental, isotopic, and geochronological analyses as an intensive pilot study, we unpack this complexity to provide greater understanding of these important sources of archaeological obsidian. [ABSTRACT FROM AUTHOR]

Stromatolites are organo-sedimentary structures that represent some of the oldest records of the early biosphere on Earth. Cyanobacteria are considered as a main component of the microbial mats that are supposed to produce stromatolite-like structures. Understanding the role of cyanobacteria and associated microorganisms on the mineralization processes is critical to better understand what can be preserved in the laminated structure of stromatolites. Laguna Negra (Catamarca, Argentina), a high-altitude hypersaline lake where stromatolites are currently formed, is considered as an analog environment of early Earth. This study aimed at characterizing carbonate precipitation withinmicrobialmats and associated oncoids in Laguna Negra. In particular, we focused on carbonated black pustular mats. By combining Confocal Laser Scanning Microscopy, Scanning Electron Microscopy, Laser Microdissection and Whole Genome Amplification, Cloning and Sanger sequencing, and Focused Ion Beam milling for Transmission Electron Microscopy, we showed that carbonate precipitation did not directly initiate on the sheaths of cyanobacterial Rivularia, which dominate in the mat. It occurred via organo-mineralization processes within a large EPS matrix excreted by the diverse microbial consortium associated with Rivularia where diatoms and anoxygenic phototrophic bacteria were particularly abundant. By structuring a large microbial consortium, Rivularia should then favor the formation of organic-rich laminations of carbonates that can be preserved in stromatolites. By using Fourier Transform Infrared spectroscopy and Synchrotron-based deep UV fluorescence imaging, we compared laminations rich in structures resembling Rivularia to putatively chemically-precipitated laminations in oncoids associated with the mats. We showed that they presented a different mineralogy jointly with a higher content in organic remnants, hence providing some criteria of biogenicity to be searched for in the fossil record. [ABSTRACT FROM AUTHOR]

Microbes play a fundamental role in the precipitation of silicate biominerals, thereby affecting the Si geochemical cycle. The fine mechanisms ruling biomineralization are not yet fully understood, and their microscopic structures can offer deep insight into their processes of formation, reactivity and stability. In this study, a Zn silicate biomineral, extracellularly produced by cyanobacterium Leptolingbya frigida, was investigated combining nuclear magnetic resonance (NMR), Zn K-edge X-ray absorption spectroscopy (XAS) and other complementary techniques. 29Si magic angle spinning and 29Si/1H cross polarization magic angle spinning analysis, Fourier transform infrared spectroscopy (FTIR) and XAS analysis revealed a poorly crystalline phase closely resembling hemimorphite [Zn4Si2O7(OH)2·H2O]. Zn K-edge extended X-ray absorption fine structure (EXAFS) provided further structural details, revealing that the Zn-O-Si interatomic distances were 7–8% shorter than the abiotic mineral. 13C NMR spectra analysis was conducted to investigate the composition of the Zn silicate biomineral organic matrix, and results revealed that C atoms occurred in several functional groups such as carbonyl carbons, C rings, O-aliphatic chains, N-aliphatic chains, and aliphatic chains. Under slightly alkaline conditions, bacterial cell walls exhibited fundamental control on the biomineralization process by binding Zn ions and forming Zn–O–Si bonds. In this way, L. frigida cell walls served as a reactive surface for the precipitation of this Zn sorosilicate, hindering the condensation of silicon dimers. Moreover, we found a 29Si NMR band at 85 ppm that could be attributed to a (C3H6O3)2Si complex. This complex could play a role in the control of silicon polymerization, with implications for Si biomineralization processes. [ABSTRACT FROM AUTHOR]

Dopaminergic system plays a key role in perception, which is an important executive function of the brain. Modulation in dopaminergic system forms an important biochemical underpinning of neural mechanisms of time perception in a very wide range, from milliseconds to seconds to longer daily rhythms. Distinct types of temporal experience are poorly understood, and the relationship between processing of different intervals by the brain has received little attention. A comprehensive understanding of interval timing functions should be sought within a wider context of temporal processing, involving genetic aspects, pharmacological models, cognitive aspects, motor control and the neurological diseases with impaired dopaminergic system. Particularly, an unexplored question is whether the role of dopamine in interval timing can be integrated with the role of dopamine in non-interval timing temporal components. In this review, we explore a wider perspective of dopaminergic system, involving genetic polymorphisms, pharmacological models, executive functions and neurological diseases on the time perception. We conclude that the dopaminergic system has great participation in impact on time perception and neurobiological basis of the executive functions and neurological diseases. [ABSTRACT FROM AUTHOR]

Archaean hydrothermal chert veins commonly contain abundant organic carbon of uncertain origin (abiotic vs. biotic). In this study, we analysed kerogen contained in a hydrothermal chert vein from the ca. 3.5 Ga Dresser Formation (Pilbara Craton, Western Australia). Catalytic hydropyrolysis (HyPy) of this kerogen yielded n-alkanes up to n-C22, with a sharp decrease in abundance beyond n-C18. This distribution (≤n-C18) is very similar to that observed in HyPy products of recent bacterial biomass, which was used as reference material, whereas it differs markedly from the unimodal distribution of abiotic compounds experimentally formed via Fischer--Tropsch-type synthesis. We therefore propose that the organic matter in the Archaean chert veins has a primarily microbial origin. The microbially derived organic matter accumulated in anoxic aquatic (surface and/or subsurface) environments and was then assimilated, redistributed and sequestered by the hydrothermal fluids ("hydrothermal pump hypothesis"). [ABSTRACT FROM AUTHOR]

Summary: Microbialites are one of the oldest known ecosystems on Earth and the coordinated metabolisms and activities of these mineral‐depositing communities have had a profound impact on the habitability of the planet. Despite efforts to understand the diversity and metabolic potential of these systems, there has not been a systematic molecular analysis of the transcriptional changes that occur within a living microbialite over time. In this study, we generated metatranscriptomic libraries from actively growing thrombolites, a type of microbialite, throughout diel and seasonal cycles and observed dynamic shifts in the population and metabolic transcriptional activity. The most transcribed genes in all seasons were associated with photosynthesis, but only transcripts associated with photosystem II exhibited diel cycling. Photosystem I transcripts were constitutively expressed at all time points including midnight and sunrise. Transcripts associated with nitrogen fixation, methanogenesis and dissimilatory sulfate reduction exhibited diel cycling, and variability between seasons. Networking analysis of the metatranscriptomes showed correlated expression patterns helping to elucidate how metabolic interactions are coordinated within the thrombolite community. These findings have identified distinctive temporal patterns within the thrombolites and will serve an important foundation to understand the mechanisms by which these communities form and respond to changes in their environment. [ABSTRACT FROM AUTHOR]

The paper investigates the role and impact of different groups of firms according to their growth type on macroeconomic aggregates at various stages of the economic cycle based on the entire population of firms in Slovenia. The applied classification of growing and fast-growing firms is based on microeconomic theory. Results exhibit that despite larger year-to-year fluctuations, firms with growth towards their long-term equilibrium contributed most to macroeconomic aggregates, i.e. employment, capital and sales, especially in times of economic prosperity. Firms with growth that shifts them closer to their short-term equilibrium proved to be more important primarily for assuring employment stability. Furthermore, we show that using single growth measures prevents us from identifying all growing firms and capturing the true contribution of particular growth groups of firms to studied macroeconomic aggregates. The paper provides both theoretical and empirical information for managers for designing different types of firm growth and enables policy makers to adopt adequate industrial policy measures. [ABSTRACT FROM AUTHOR]

We studied sediments from the ca. 1400 million-year-old Xiamaling Formation from the North China block. The upper unit of this formation (unit 1) deposited mostly below storm wave base and contains alternating black and green-gray shales with very distinct geochemical characteristics. The black shales are enriched in redox-sensitive trace metals, have high concentrations of total organic carbon (TOC), high hydrogen index (HI) and iron speciation indicating deposition under anoxic conditions. In contrast, the green-gray shales show no trace metal enrichments, have low TOC, low HI and iron speciation consistent with an oxygenated depositional setting. Altogether, unit 1 displays alternations between oxic and anoxic depositional environments, driving differences in carbon preservation consistent with observations from the modern ocean. We combined our TOC and HI results to calculate the differences in carbon mineralization and carbon preservation by comparing the oxygenated and anoxic depositional environments. Through comparisons of these results with modern sedimentary environments, and by use of a simple diagenetic model, we conclude that the enhanced carbon mineralization under oxygenated conditions in unit 1 of the Xiamaling Formation required a minimum of 4 to 8% of present-day atmospheric levels (PAL) of oxygen. These oxygen levels are higher than estimates based on chromium isotopes and reinforce the idea that the environment contained enough oxygen for animals long before their evolution. [ABSTRACT FROM AUTHOR]

Heterotrichous ciliates play an important role in aquatic ecosystem energy flow processes and many are model organisms for research in cytology, regenerative biology, and toxicology. In the present study, we combine both morphological and molecular data to infer phylogenetic relationships at family-genus level and propose new evolutionary hypotheses for the class Heterotrichea. The main results include: (1) 96 new ribosomal DNA sequences from 36 populations, representing eight families and 13 genera, including three poorly annotated genera, Folliculinopsis, Ampullofolliculina and Linostomella; (2) the earliest-branching families are Spirostomidae in single-gene trees and Peritromidae in the concatenated tree, but the family Peritromidae probably represents the basal lineage based on its possession of many "primitive" morphological characters; (3) some findings in molecular trees are not supported by morphological evidence, such as the family Blepharismidae is one of the most recent branches and the relationship between Fabreidae and Folliculinidae is very close; (4) the systematic positions of Condylostomatidae, Climacostomidae, and Gruberiidae remain uncertain based either on morphological or molecular data; and (5) the monophyly of each genus included in the present study is supported by the molecular phylogenetic trees, except for Blepharisma in the SSU rDNA tree and Folliculina in the ITS1-5.8S-ITS2 tree.

Aim Patterns of α- and β-diversity of soil protist communities and the factors that shape them remain largely unknown. We undertook a world-wide survey of forest litter to investigate the patterns of diversity in a group of testate amoebae. We aimed to assess: (1) whether there is a latitudinal gradient in α-diversity, and (2) whether β-diversity was correlated solely with environmental factors commonly used in soil biology research or if it was also independently explained by geographical barriers. Location World-wide. Methods We studied the diversity of Euglyphida, a common group of testate amoebae, in 35 samples of forest litter and moss samples from a global survey, using small subunit rRNA gene sequences. We assessed the relationship between sample α-diversity and latitude using generalized additive models ( GAM). Furthermore, we determined the relationships between community composition and geographical models (distance-based Moran's Eigenvector Maps - db- MEM) using Generalized UniFrac distances ( GUniFrac). We also investigated the relationship between individual measured soil parameters, WorldClim data and diversity (alpha plus beta) using both raw data and synthetic variables obtained through principal components analysis. Results We recorded 245 phylotypes belonging to 6 out of 7 known Euglyphida families, plus four novel deep clades. Euglyphid α-diversity was positively correlated with temperature and negatively with latitude and litter C/N ratio. Euglyphida community structure was correlated with the spatial eigenvector Db- MEM31, independently of all measured environmental variables. Db- MEM31 corresponds to a natural barrier constituted by the Northern Hemisphere desert belt. Beta diversity was correlated with other environmental variables, such as pH, isothermality and temperature in the coldest month of the year. Main conclusions Soil euglyphid α-diversity displays a latitudinal gradient, and β-diversity is not only correlated with climatic and physicochemical parameters but also with geographical barriers. Such patterns of diversity were until recently believed to be characteristic only for macroscopic organisms. [ABSTRACT FROM AUTHOR]