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Aquilaria tree species are naturally distributed in the Indomalesian region and are protected against over-exploitation. They produce a fragrant non-timber product of high economic value, agarwood. Ambiguous species delimitation and limited genetic information within Aquilaria are among the impediments to conservation efforts. In this study, we conducted comparative analysis on eight Aquilaria species complete chloroplast (cp) genomes, of which seven were newly sequenced using Illumina HiSeq X Ten platform followed by de novo assembly. Aquilaria cp genomes possess a typical quadripartite structure including gene order and genomic structure. The length of each of the cp genome is about 174 kbp and encoded between 89 and 92 proteins, 38 tRNAs, and 8 rRNAs, with 27 duplicated in the IR (inverted repeat) region. Besides, 832 repeats (forward, reverse, palindrome and complement repeats) and nine highly variable regions were also identified. The phylogenetic analysis suggests that the topology structure of Aquilaria cp genomes were well presented with strong support values based on the cp genomes data set and matches their geographic distribution pattern. In summary, the complete cp genomes will facilitate development of species-specific molecular tools to discriminate Aquilaria species and resolve the evolutionary relationships of members of the Thymelaeaceae family. [ABSTRACT FROM AUTHOR]

Clematis s.l. (including Archiclematis and Naravelia) is a genus of approximately 300 species with cosmopolitan distribution. The diversity of its pollen was surveyed in 162 taxa belonging to all infrageneric groups of Clematis s.l. Pollen morphology was investigated by use of scanning electron microscopy to identify useful characters, test taxonomic and systematic hypotheses, and elucidate pollen character evolution on the basis of the molecular phylogeny. Clematis pollen is small to medium (14.8-32.1 μm × 14.2-28.7 μm), oblate to prolate ( P/ E = 0.9-1.4) in shape. The apertures may be tricolpate and pantoporate sometimes with 4-zonocolpate and pantocolpate pollen grains as transitional forms. The tricolpate pollen grains are predominant and occur in all the sections of the genus, whereas pantoporate pollen grains can be found in sect. Tubulosae, sect. Viorna, sect. Viticella, and Naravelia only. Phylogenetic mapping of aperture types reveals that the pantoporate pollen type may be the apomorphy in the genus and evolved several times. The surface ornamentation in all taxa studied is similar and characterized by microechinae evenly distributed on the microperforate tectum. The size and density of spinules on the tectum vary greatly but successive in the whole genus. According to the character syndromes of the ornamentation, separating sect. Brachiata from sect. Meclatis is supported. Though pollen morphology may contribute to investigation of problematic taxa, the taxonomic value of pollen morphology is limited at the species level. [ABSTRACT FROM AUTHOR]

Cuscuta (dodder, Convolvulaceae) is a genus of about 200 species of obligate stem parasites with subcosmopolitan distribution. The diversity of pollen and ovule production was surveyed in 128 species and ten varieties. Taxa were assigned to Cruden's mating system categories based on their pollen-ovule ratios. Variation and correlations among floral characters were analyzed using regression and ANOVA, while the mating system categories were subjected to a linear discriminant and canonical variates analysis to assess their cohesiveness. Our data strongly suggest that most Cuscuta species possess a wide range of mixed-mating systems. Whereas four ovules develop in each flower, pollen production varies over three orders of magnitude. Several Cuscuta taxa are highly outcrossing, but no species could be identified that are exclusively selfing. The transition from the one-style flowers of subg. Monogynella to the two-style flowers of subgenera Cuscuta and Grammica, and from simultaneous to sequential maturation of the two stigmas in the latter subgenus, has decreased the role of herkogamy as a facilitator of outcrossing. These evolutionary changes are associated with an increase of species richness in subgenus Cuscuta, and especially in subgenus Grammica. Morphological features were not individually found to have a strong correlation to the mating system, but in general, larger corollas and stigmas were associated with greater pollen-ovule ratios. Cuscuta presents some puzzling results when considered in light of the sex allocation theory, as only some infrageneric lineages demonstrate the predicted pollen size-number tradeoff, while Cuscuta gracillima complex (in subgenus Grammica) displays an unexpected negative relationship between pollen size and style length. The relationship between host range and mating system is discussed, prompting further research into the co-evolution of pollination systems and life history traits between parasites and their host species. [ABSTRACT FROM AUTHOR]

The factors responsible for the patterns of niche differentiation and narrow endemism have rarely been investigated in annual Mediterranean plants. This topic was addressed here by performing comparative studies on realized niches, regional occupancy, global biogeographical distribution and seed traits of a set of Arenaria (Caryophyllaceae) species inhabiting southern Provence (SE France), focusing in particular on Arenaria provincialis, a narrow endemic restricted to the hills and modest calcareous mountains around the city of Marseille. Field studies were carried out from 2008 to 2009 at 624 sites in the limestone mountains where Arenaria species are likely to occur. The Arenaria species occurring in southern Provence vary greatly in their patterns of regional occupancy and their biogeographical distribution. Multivariate analysis of the realized niche showed that they have some similar limiting environmental factors in common, but they do not all occupy the same habitats. Studies on the fruits and seeds showed that the endemic A. provincialis has a larger seed than its congeners and a capsule that remains closed and falls from the plant at maturity. This well-differentiated diaspore specific to A. provincialis may be responsible for the limited dispersal capacity of this species. Phylogenetic analyses showed that A. provincialis is not closely related to the other taxa inhabiting southern Provence, but rather to Arenaria occurring in highland areas in the south of France. The restricted pattern of distribution of A. provincialis is probably due to the past isolation event from which it originated and to its limited dispersal capacity, rather than resulting from its ecological niche range. [ABSTRACT FROM AUTHOR]

Comparison of leaf morphometric variation and phylogenetic analyses based on nrITS and partial trnC-D cpDNA sequences were conducted for samples of Lysionotus pauciflorus sensu lato collected from China, Japan and Taiwan. In the morphometric comparison, leaves of plants from Japan proper and those from Taiwan proper were not significantly distinguishable by their leaf length to width ratio. In phylogenetic analyses, monophyly of L. pauciflorus s. l. samples was strongly supported, and Japanese and Taiwanese samples fell into a clade separate from Chinese samples. In the Japan-Taiwan clade, plants from Japan proper formed a sister clade to those from Okinawa Island (Japan) and Taiwan. The present results suggest that (1) the L. pauciflorus s. l. samples from China, Japan and Taiwan must be treated as a single species; (2) L. pauciflorus s. l. originated in China; (3) a single dispersal event, dispersal via a land-bridge during low sea levels in a Pleistocene glacial maximum, from China to Taiwan and Japan is proposed; (4) three oversea dispersal events, probably through anemochory, to Japan proper, across the Tokara Gap, to Okinawa islands crossing the Kerama Gap, and from Taiwan to Lanyu Island are proposed. The study gives further insight into the biogeographical dynamics between the Ryukyus and surrounding areas. [ABSTRACT FROM AUTHOR]

Helichrysum nicolai from the Cape Verdean island of São Nicolau is described as a species new to science and illustrated. The systematic position in Helichrysum of this acaulescent dwarf rosette shrub with heterogamous capitula, in which the female flowers outnumber the hermaphrodite ones, is established using an ITS phylogeny based on maximum parsimony and Bayesian inference analyses. The new species is most closely related to the Canary Island endemics H. alucense and H. monogynum. The closest relative to these three species are not the other members of the genus on the mid-Atlantic archipelagos but H. somalense from the Horn of Africa region and the southern Arabian Peninsula and the widespread tropical African-S Arabian-SE Iranian H. glumaceum, to which the SE Iranian H. makranicum is found to be conspecific. The phytogeographical significance of these relationships is discussed and at least three independent colonization events of the mid-Atlantic archipelagos by Helichrysum are concluded from the molecular data available. [ABSTRACT FROM AUTHOR]

Phylogenetic relationships within the genus Pieris (Ericaceae) were investigated based on the rbcL and matK genes along with five spacer sequences of chloroplast DNA to address questions regarding the phylogeography of the genus in association with insular plants on the Ryukyu Islands. The most parsimonious trees indicated that P. floribunda from eastern North America is a sister taxon to the remaining taxa examined, and suggested that the East Asian taxa examined are monophyletic. A morphologically cohesive group, section Pieris, was revealed to be paraphyletic. Within the East Asian clade, insular endemics from the Ryukyu Islands, Taiwan, and mainland Japan formed a sister group to P. formosa from the Himalayas and southern China. Our data suggest that the insular endemics of the Ryukyu Islands and Taiwan arose via allopatric divergence as a result of a paleogeographical land configuration of a landbridge during the early–middle Pleistocene in the Quaternary Period. [ABSTRACT FROM AUTHOR]

Hybridization and polyploidization are important evolutionary processes in higher plants and have greatly enriched the diversity of the genus Potamogeton (Potamogetonaceae). To study the phylogenetic relationships and hybrid origin of Potamogeton species, 35 accessions representing 20 species, including diploids, tetraploids and hexaploids, and three hybrids were collected in China and their ribosomal internal transcribed spacers (ITS) were cloned, sequenced and statistically analyzed. The data showed that ITS sequences were informative to analyze the phylogeny of Potamogeton, and the phylogenetic tree revealed that Potamogeton species examined could be mainly divided into two groups (Group I and II), corresponding to subgenus Potamogeton and subgenus Coleogeton, respectively. Then, the evolutionary mechanism on the polyploidy of Potamogeton species was discussed. P. natans probably was an allotetraploid and one of its parent might result from aneuploidy change of species with 2n=28. P. hubeiensis might be derived from the hybridization between P. octandrus and P. cristatus. We suggested that both P. lucens and P. maackianus probably were allotetraploids, and P. obtusifolius might be a diploid hybrid between P. compressus and P. pusillus. Moreover, P. malainoides might have undergone biased concerted evolution toward one of its parent P. wrightii, and P. intortusifolius might be a synonymy of P. × anguillanus. [ABSTRACT FROM AUTHOR]

104 populations of 15 Nordic species (2x-16x) of the taxonomically complex genus Draba were investigated using enzyme electrophoresis. The polyploids were genetic alloploids showing high levels of fixed heterozygosity and electrophoretic variation; the diploids were homozygous and genetically depauperate. Thus, the data suggest that alloploidy in arctic-alpine Draba serves as an escape from genetic depauperation caused by inbreeding at the diploid level. Although some populations probably have local alloploid origins, electrophoretic data indicate that several polyploids have migrated repeatedly into the Nordic area. Draba crassifolia (2n = 40) is probably octoploid based on x = 5. A hypothesis on the evolutionary history of the polyploids based on x = 8 is presented. Diploids contributing to numerous polyploid genomes and multiple origins of polyploids have seriously blurred taxonomic relationships. Relationships inferred from genetic data do not always correspond to those based on morphology; two morphologically very similar polyploids, D. alpina and D. oxycarpa, were, for example, genetically distant and probably represent independent lineages. [ABSTRACT FROM AUTHOR]

The leaf-anatomy, palynology, seed-morphology, vegetative morphology and especially the highly complicated floral morphology of the Coryciinae s. str. ( Diseae: Orchidoideae: Orchidaceae) are described and illustrated in detail. On the basis of these characters the presumed phylogeny, based on a rigorous cladistic analysis, is presented. The cladistic biogeographical analysis of the Coryciinae s. str. shows that it is a member of the Afrotemperate Track, with a pattern of vicariance events typical of the members of this track. An analysis of the patterns of speciation shows that allopatric speciation appears to be rare, and that parapatric speciation across edaphic boundaries may be the most important factor. Proceeding from the information presented, a new classification of the group is proposed in which we recognize the four genera Ceratandra, Evotella, Pterygodium and Corycium. The new monotypic genus Evotella comprises a species originally described as Pterygodium rubiginosum. The three species of the genus Anochilus are transferred to Corycium and Pterygodium. P. magnum, which was originally described as Pterygodium but was transferred to Corycium lately, is placed in a monotypic section of Pterygodium. [ABSTRACT FROM AUTHOR]

The evolution and taxonomic relationships in the Triticeae are discussed with the view to highlight aspects of this agronomically important group of plants, which may be of interest to molecular biology. Some of these aspects are addressed in more detail in adjoining papers in which specific genomic loci have been examined at the DNA sequence or isozyme level. Aspects discussed include the systematics and geographic distribution of the Triticeae species, isozyme and chromosome pairing studies on some of the species as well as more recent developments in DNA analyses. A survey of the systematics of the Triticeae indicated that the genomic system of Löve is probably the most useful starting point for interpreting molecular data even though the system has many problems from a taxonomic point of view. The geographical distribution of Triticeae species, using both published and unpublished data, suggested that information of this type taken together with the theory of continental drift provides a broad time-span for considering data from DNA sequence studies. The significance, and modes of analyses, of isozyme studies were assessed because they often provide valuable characters in determining relationships between species. The main character underlying Löve's and Dewey's analyses of the Triticeae, namely chromosome pairing, is discussed with particular reference to isozyme studies to show that in some cases, such as species of Hordeum sensu lato, consistent relationships are obtained. Finally, new developments in understanding chromosome structure are considered in relation to the above variables in the taxonomy and evolution of the Triticeae. [ABSTRACT FROM AUTHOR]

Photosynthetic pathways are reported for 305 species of Chenopodiaceae from Africa, Asia and Europe. Ecological characteristics, phytogeography and life forms of all species are given, and their correlation with relevant CO2-fixation types are discussed. 205 species (67.2%) exhibit the C4-pathway and 100 species (32.8%) the C3-pathway of CO2-fixation. Most of the C4 species are of Irano-Turanian origin. The diversity of C4 species of the Irano-Turanian phytochoria, with very harsh winters, are interpreted by the active period of Chenopods in summer. There is a close relationship between some special morphotypes and respective photosynthetic type. Halophytes and xerophytes with articulated stems and stem succulents of Anabasis-type are exclusively C4. Leaf succulent halophytes and xerohalophytes are predominantly C4. Hygrohalophytes with leaf or stem succulence are often C3. Probably many C4 Salsoleae have been evolved in the Afroasiatic arid zone after the climatic changes of the Miocene. Among them there is a high proportion of annuals that have a younger origin. There is some evidence that the present Chenopods of the subfamily “ Salsoloideae” may have their ancient stock in NW Africa. We found close taxonomic relationships between photosynthetic pathways and infrageneric classification in genera with both types of C3 and C4, like Atriplex and Suaeda. [ABSTRACT FROM AUTHOR]

Partial 18S rDNA sequences, including a 102 base pair insertion, were used to infer a phylogeny among 48 samples across all sections in Halimeda Lamouroux, 1812. The phylogeny reveals a separation of the monophyletic section Rhipsalis into a western Atlantic and a western Pacific clade. Consequently, morphologically similar species within this section such as H. monile (Ellis & Solander) Lamouroux (western Atlantic), and H. cylindracea Decaisne (western Pacific), are not sistertaxa. Vicariant events that separated the tropical regions of the Atlantic and Indo-Pacific Oceans can explain the observed biogeographical pattern in section Rhipsalis. [ABSTRACT FROM AUTHOR]