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Solution pipes are an important geomorphological feature in carbonate rocks formed by the host rock’s dissolution due to water’s focused flow, indicating the phenomena of water focusing in particular areas. However, their visual exposures are often limited by sediment and vegetation cover, making it challenging to understand their spatial distribution and morphology. In this study, we used geophysical methods such as ground penetrating radar (GPR) and magnetic gradiometer to detect and estimate the spatial distribution of solution pipes in a freshly exposed quarry site in Smerdyna, Poland. Our results indicate that both GPR and magnetometric measurements effectively detect most of the solution pipes, particularly those filled with large amounts of clay and silt particles. The GPR method, in particular, proved to be convenient due to the high contrast of the dielectric constant. The information on the positions and shapes of the pipes obtained based on these methods is crucial in understanding the link between pipe morphology and the physical conditions at the time of their formation. Furthermore, our measurements provided quasi-spatial correlations between pipe positions, the distribution of inter-pipe distances, and the potential relationship between alignments of rock joints and pipe locations. Our study demonstrates the potential of geophysical methods in detecting and understanding solution pipes, which are essential from environmental and climatic perspectives. This information can be used for future studies on pipe formation and environmental impact.