27 results on '"es, H."'
Search Results
2. Holter Monitoring and Cardiac Biomarkers in Screening for Cardiac Sarcoidosis.
- Author
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Bakker, A. L. M., Mathijssen, H., Huitema, M. P., Kapteijns, L., Grutters, J. C., Veltkamp, M., Keijsers, R. G., Akdim, F., van Es, H. W., Peper, J., and Post, M. C.
- Abstract
Introduction: Early detection of cardiac sarcoidosis (CS) is crucial due to its association with severe complications such as ventricular arrhythmias, heart failure, and sudden cardiac death. Advanced imaging techniques like cardiac magnetic resonance imaging (CMR) and 18F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography (FDG-PET/CT) are effective in detecting CS but not easily accessible. The optimal method for selecting patients for advanced screening remains uncertain. Methods: In this retrospective cohort study, all extracardiac sarcoidosis patients screened for CS were reviewed. CS was defined as a multidisciplinary team (MDT) consensus diagnosis. Univariate and multivariate binary logistic regressions were used to identify factors associated with CS, assessing their diagnostic performance, and integrating them into a diagnostic model. Results: Out of 354 patients (average age 51.5 years, 52.5% male), 18.4% were diagnosed with CS. In our cohort, male gender, a QRS duration > 120 ms, and nsVT on Holter monitoring were identified as significant markers associated with CS. Combining age, gender, AV-block or QRS > 120ms on ECG, and nsVT on Holter monitoring provided the highest diagnostic accuracy (AUC of 0.82). Cardiac biomarkers NT-proBNP and troponin T did not improve the diagnostic performance. Conclusion: In our cohort, male gender, a QRS duration > 120 ms, and nsVT on Holter monitoring were identified as significant markers associated with the presence of cardiac sarcoidosis. These clinical markers may aid in selecting sarcoidosis patients for screening with advanced cardiac imaging, potentially leading to earlier detection and management of the disease. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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3. Potential interstitial lung abnormalities on chest X-rays prior to symptoms of idiopathic pulmonary fibrosis
- Author
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Hoffman, T. W., van Es, H. W., Biesma, D. H., and Grutters, J. C.
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- 2022
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4. Evaluation of automated airway morphological quantification for assessing fibrosing lung disease
- Author
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Longziekten, Pakzad, A., Cheung, W. K., Van Moorsel, C. H.M., Quan, K., Mogulkoc, N., Bartholmai, B. J., Van Es, H. W., Ezircan, A., Van Beek, F., Veltkamp, M., Karwoski, R., Peikert, T., Clay, R. D., Foley, F., Braun, C., Savas, R., Sudre, C., Doel, T., Alexander, D. C., Wijeratne, P., Hawkes, D., Hu, Y., Hurst, J. R., Jacob, J., Longziekten, Pakzad, A., Cheung, W. K., Van Moorsel, C. H.M., Quan, K., Mogulkoc, N., Bartholmai, B. J., Van Es, H. W., Ezircan, A., Van Beek, F., Veltkamp, M., Karwoski, R., Peikert, T., Clay, R. D., Foley, F., Braun, C., Savas, R., Sudre, C., Doel, T., Alexander, D. C., Wijeratne, P., Hawkes, D., Hu, Y., Hurst, J. R., and Jacob, J.
- Published
- 2024
5. Prognostication of progressive pulmonary fibrosis in connective tissue disease-associated interstitial lung diseases: A cohort study
- Author
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Lab Reumatologie/Klinische Immunologie, Infection & Immunity, Cancer, CTI Meyaard, Longziekten, Arts-assistenten Radiologie, Regenerative Medicine and Stem Cells, JC onderzoeksprogramma Methodologie, MS Reumatologie/Immunologie/Infectie, Chiu, Yu Hsiang, Koops, Maaike F.M., Voortman, Mareye, van Es, H. Wouter, Langezaal, Lucianne C.M., Welsing, Paco M.J., Jamnitski, Anna, Wind, Anne E., van Laar, Jacob M., Grutters, Jan C., Spierings, Julia, Lab Reumatologie/Klinische Immunologie, Infection & Immunity, Cancer, CTI Meyaard, Longziekten, Arts-assistenten Radiologie, Regenerative Medicine and Stem Cells, JC onderzoeksprogramma Methodologie, MS Reumatologie/Immunologie/Infectie, Chiu, Yu Hsiang, Koops, Maaike F.M., Voortman, Mareye, van Es, H. Wouter, Langezaal, Lucianne C.M., Welsing, Paco M.J., Jamnitski, Anna, Wind, Anne E., van Laar, Jacob M., Grutters, Jan C., and Spierings, Julia
- Published
- 2023
6. POS0953 PROGRESSIVE PULMONARY FIBROSIS IN CONNECTIVE TISSUE DISEASE ASSOCIATED INTERSTITIAL LUNG DISEASES
- Author
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Chiu, Y. H., primary, Koops, M., additional, Voortman, M., additional, Van Es, H. W., additional, Langezaal, L., additional, Welsing, P., additional, Jamnitski, A., additional, Wind, A., additional, Van Laar, J. M., additional, Grutters, J. C., additional, and Spierings, J., additional
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- 2023
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7. OP0293 ANTI-CITRULLINATED HISTONE MONOCLONAL ANTIBODY CIT-013, A DUAL ACTION THERAPEUTIC FOR NEUTROPHIL EXTRACELLULAR TRAP ASSOCIATED AUTOIMMUNE DISEASES
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Van der Linden, M., primary, Kumari, S., additional, Montizaan, D., additional, Van Dalen, S., additional, Kip, A., additional, Foster, M., additional, Reinieren, I., additional, Neubert, E., additional, Erpenbeck, L., additional, Bruurmijn, T., additional, Van Zandvoort, P., additional, Vink, P., additional, Meldrum, E., additional, Van Es, H., additional, and Chirivi, R., additional
- Published
- 2023
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8. Prognostication of progressive pulmonary fibrosis in connective tissue disease-associated interstitial lung diseases: A cohort study
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Chiu, Yu-Hsiang, primary, Koops, Maaike F. M., additional, Voortman, Mareye, additional, van Es, H. Wouter, additional, Langezaal, Lucianne C. M., additional, Welsing, Paco M. J., additional, Jamnitski, Anna, additional, Wind, Anne E., additional, van Laar, Jacob M., additional, Grutters, Jan C., additional, and Spierings, Julia, additional
- Published
- 2023
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9. Quantifying morphological airway damage in idiopathic pulmonary fibrosis
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Pakzad, A, primary, Cheung, W K, additional, Quan, K, additional, Mogulkoc, N, additional, Van Moorsel, C H, additional, Bartholmai, B J, additional, Van Es, H W, additional, Ezircan, A, additional, Van Beek, F, additional, Veltkamp, M, additional, Karwoski, R, additional, Peikert, T, additional, Clay, R D, additional, Foley, F, additional, Braun, C, additional, Savas, R, additional, Sudre, C, additional, Doel, T, additional, Alexander, D C, additional, Wijeratne, P, additional, Hawkes, D, additional, Hu, Y, additional, Hurst, J R, additional, and Jacob, J, additional
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- 2022
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10. Predictors of appropriate implantable cardiac defibrillator therapy in cardiac sarcoidosis
- Author
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Mathijssen, Harold, primary, Bakker, Annelies L. M., additional, Balt, Jippe C., additional, Akdim, Fatima, additional, van Es, H. Wouter, additional, Veltkamp, Marcel, additional, Grutters, Jan C., additional, and Post, Marco C., additional
- Published
- 2022
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11. A rare aneurysm of the brachiocephalic vein causing chronic thromboembolic pulmonary hypertension.
- Author
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Logtenberg, M E, Boerman, S, Hofman, F N, Es, H W van, and Post, M C
- Subjects
BRACHIOCEPHALIC veins ,ANEURYSMS ,PNEUMONIA ,PULMONARY embolism ,COMPUTED tomography ,PULMONARY hypertension ,PULMONARY artery ,LUNGS ,CATHETERIZATION ,BLOOD pressure ,CELL receptors - Published
- 2024
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12. SC3_3. FKBPL signalling in placental development and preeclampsia
- Author
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Ghorbanpour, S., Richards, C., Pienaar, D., Sesperez, K., Aboulkheyr Es, H., Nikolic, V., Karadzov-Orlic, N., Mikovic, Z., Stefanovic, M., Cakic, Z., Alqudah, A., Cole, L., Gorrie, C., Mcgrath, K., Kavurma, MM., Warkiani, ME., and McClements, L.
- Published
- 2023
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13. PROGRESSIVE PULMONARY FIBROSIS IN CONNECTIVE TISSUE DISEASE ASSOCIATED INTERSTITIAL LUNG DISEASES.
- Author
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Chiu, Y. H., Koops, M., Voortman, M., Van Es, H. W., Langezaal, L., Welsing, P., Jamnitski, A., Wind, A., Van Laar, J. M., Grutters, J. C., and Spierings, J.
- Published
- 2023
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- View/download PDF
14. ANTI-CITRULLINATED HISTONE MONOCLONAL ANTIBODY CIT-013, A DUAL ACTION THERAPEUTIC FOR NEUTROPHIL EXTRACELLULAR TRAP ASSOCIATED AUTOIMMUNE DISEASES.
- Author
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Van der Linden, M., Kumari, S., Montizaan, D., Van Dalen, S., Kip, A., Foster, M., Reinieren, I., Neubert, E., Erpenbeck, L., Bruurmijn, T., Van Zandvoort, P., Vink, P., Meldrum, E., Van Es, H., and Chirivi, R.
- Published
- 2023
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15. Pivotal roles of Plasmodium falciparum lysophospholipid acyltransferase 1 in cell cycle progression and cytostome internalization.
- Author
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Fukumoto J, Yoshida M, Tokuoka SM, H Hayakawa ES, Miyazaki S, Sakura T, Inaoka DK, Kita K, Usukura J, Shindou H, and Tokumasu F
- Subjects
- Humans, Protozoan Proteins metabolism, Protozoan Proteins genetics, Erythrocytes parasitology, 1-Acylglycerophosphocholine O-Acyltransferase metabolism, 1-Acylglycerophosphocholine O-Acyltransferase genetics, Acyltransferases metabolism, Acyltransferases genetics, Malaria, Falciparum parasitology, Lysophospholipids metabolism, Plasmodium falciparum enzymology, Plasmodium falciparum genetics, Cell Cycle
- Abstract
The rapid intraerythrocytic replication of Plasmodium falciparum, a deadly species of malaria parasite, requires a quick but constant supply of phospholipids to support marked cell membrane expansion. In the malarial parasite, many enzymes functioning in phospholipid synthesis pathway have not been identified or characterized. Here, we identify P. falciparum lysophospholipid acyltransferase 1 (PfLPLAT1) and show that PfLPLAT1 is vital for asexual parasite cell cycle progression and cytostome internalization. Deficiency in PfLPLAT1 results in decreased parasitemia and prevents transition to the schizont stage. Parasites lacking PfLPLAT1 also exhibit distinctive omega-shaped vacuoles, indicating disrupted cytostome function. Transcriptomic analyses suggest that this deficiency impacts DNA replication and cell cycle regulation. Mass spectrometry-based enzyme assay and lipidomic analysis demonstrate that recombinant PfLPLAT1 exhibits lysophospholipid acyltransferase activity with a preference for unsaturated fatty acids as its acyl donors and lysophosphatidic acids as an acceptor, with its conditional knockout leading to abnormal lipid composition and marked morphological and developmental changes including stage arrest. These findings highlight PfLPLAT1 as a potential target for antimalarial therapy, particularly due to its unique role and divergence from human orthologs., Competing Interests: Competing interests: The authors declare no competing interests., (© 2025. The Author(s).)
- Published
- 2025
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16. A rare aneurysm of the brachiocephalic vein causing chronic thromboembolic pulmonary hypertension.
- Author
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Logtenberg ME, Boerman S, Hofman FN, van Es HW, and Post MC
- Abstract
Competing Interests: Conflict of interest: None to declared.
- Published
- 2024
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17. Real-Time, High-Throughput Microscopic Quantification of Human Neutrophil Extracellular Trap Release and Assessing the Pharmacology of Antagonists.
- Author
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van der Linden M, Kumari S, van Dalen S, Kip A, Zwiers E, Waaijenberg K, Reinieren-Beeren I, van Es H, Meldrum E, and Chirivi RGS
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- Humans, High-Throughput Screening Assays methods, Microscopy methods, Tetradecanoylphorbol Acetate pharmacology, Extracellular Traps drug effects, Extracellular Traps metabolism, Neutrophils drug effects
- Abstract
Neutrophils play an important role in innate immune defense by using several strategies, including the release of neutrophil extracellular traps (NETs) in a process referred to as NETosis. However, in the past two decades, it has become clear that the accumulation of NETs in tissues contributes to the pathophysiology of multiple inflammatory and autoimmune diseases. Therefore, interest in the development of NETosis antagonists has risen. Variable and non-standardized methods to detect and analyze NETosis were developed concomitantly, each with its own advantages and limitations. Here, we describe a real-time microscopy method for the quantification of human NET release, allowing to study NETosis as well as NET inhibition in a high-throughput manner. The surface area-based semi-automated analysis recognizes NETs and distinguishes them from non-netting activated neutrophils. We demonstrate that the non-physiological NETosis inducers, calcium ionophore and phorbol-12-myristate-13-acetate (PMA), trigger the release of NETs with different characteristics and kinetics. Furthermore, we show that this approach allows studying NET release in response to disease-relevant stimuli, including immune complexes, N-Formylmethionine-leucyl-phenylalanine (fMLF), monosodium urate crystals, and calcium pyrophosphate crystals. To exemplify the utility of this method to study NETosis antagonists, we used CIT-013, a first-in-class monoclonal antibody inhibitor of NET release. CIT-013 targets citrullinated histone H2A and H4 and efficiently inhibits NET release with an IC50 of 4.6 nM. Other anti-histone antibodies tested lacked this NETosis-inhibitory capacity. Altogether, we demonstrate that this protocol enables specific, reliable, and reproducible high-throughput quantification of NETs, enhancing the study of NET release characteristics, kinetics, and pharmacology of NETosis antagonists.
- Published
- 2024
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18. (-)-Epigallocatechin-3-gallate induced apoptosis by dissociation of c-FLIP/Ku70 complex in gastric cancer cells.
- Author
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Shahriari Felordi M, Alikhani M, Farzaneh Z, Alipour Choshali M, Ebrahimi M, Aboulkheyr Es H, Piryaei A, Najimi M, and Vosough M
- Subjects
- Humans, CASP8 and FADD-Like Apoptosis Regulating Protein genetics, Apoptosis, Cell Line, Tumor, Cell Proliferation, Stomach Neoplasms drug therapy, Catechin pharmacology
- Abstract
Anti-cancer properties of (-)-epigallocatechin-3-gallate (EGCG) are mediated via apoptosis induction, as well as inhibition of cell proliferation and histone deacetylase. Accumulation of stabilized cellular FLICE-inhibitory protein (c-FLIP)/Ku70 complex in the cytoplasm inhibits apoptosis through interruption of extrinsic apoptosis pathway. In this study, we evaluated the anti-cancer role of EGCG in gastric cancer (GC) cells through dissociation of c-FLIP/Ku70 complex. MKN-45 cells were treated with EGCG or its antagonist MG149 for 24 h. Apoptosis was evaluated by flow cytometry and quantitative RT-PCR. Protein expression of c-FLIP and Ku70 was analysed using western blot and immunofluorescence. Dissociation of c-FLIP/Ku70 complex as well as Ku70 translocation were studied by sub-cellular fractionation and co-immunoprecipitation. EGCG induced apoptosis in MKN-45 cells with substantial up-regulation of P53 and P21, down-regulation of c-Myc and Cyclin D1 as well as cell cycle arrest in S and G2/M check points. Moreover, EGCG treatment suppressed the expression of c-FLIP and Ku70, decreased their interaction while increasing the Ku70 nuclear content. By dissociating the c-FLIP/Ku70 complex, EGCG could be an alternative component to the conventional HDAC inhibitors in order to induce apoptosis in GC cells. Thus, its combination with other cancer therapy protocols could result in a better therapeutic outcome., (© 2023 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd.)
- Published
- 2023
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19. Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters.
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Louis M, Korlević P, Nykänen M, Archer F, Berrow S, Brownlow A, Lorenzen ED, O'Brien J, Post K, Racimo F, Rogan E, Rosel PE, Sinding MS, van der Es H, Wales N, Fontaine MC, Gaggiotti OE, and Foote AD
- Subjects
- Animals, Genomics, Paleontology, Ecosystem, Genetics, Population, Bottle-Nosed Dolphin genetics
- Abstract
Parallel evolution provides strong evidence of adaptation by natural selection due to local environmental variation. Yet, the chronology, and mode of the process of parallel evolution remains debated. Here, we harness the temporal resolution of paleogenomics to address these long-standing questions, by comparing genomes originating from the mid-Holocene (8610-5626 years before present, BP) to contemporary pairs of coastal-pelagic ecotypes of bottlenose dolphin. We find that the affinity of ancient samples to coastal populations increases as the age of the samples decreases. We assess the youngest genome (5626 years BP) at sites previously inferred to be under parallel selection to coastal habitats and find it contained coastal-associated genotypes. Thus, coastal-associated variants rose to detectable frequencies close to the emergence of coastal habitat. Admixture graph analyses reveal a reticulate evolutionary history between pelagic and coastal populations, sharing standing genetic variation that facilitated rapid adaptation to newly emerged coastal habitats., (© 2023. The Author(s).)
- Published
- 2023
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20. HNF4α is possibly the missing link between epithelial-mesenchymal transition and Warburg effect during hepatocarcinogenesis.
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Shokouhian B, Negahdari B, Heydari Z, Totonchi M, Aboulkheyr Es H, Piryaei A, Mostafavi E, and Vosough M
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- Mice, Animals, Humans, Epithelial-Mesenchymal Transition genetics, Mice, Nude, Cell Line, Tumor, Neoplasm Recurrence, Local genetics, Hepatocyte Nuclear Factor 4 genetics, Gene Expression Regulation, Neoplastic, Cell Proliferation genetics, Carcinoma, Hepatocellular pathology, Liver Neoplasms pathology
- Abstract
Hepatocellular carcinoma (HCC) is a heterogeneous, late-diagnosed, and highly recurrent malignancy that often affects the whole body's metabolism. Finding certain theranostic molecules that can address current concerns simultaneously is one of the priorities in HCC management. In this study, performing protein-protein interaction network analysis proposed hepatocyte nuclear factor 4 alpha (HNF4α) as a hub protein, associating epithelial-mesenchymal transition (EMT) to reprogrammed cancer metabolism, formerly known as the Warburg effect. Both phenomena improved the compensation of cancerous cells in competitive conditions. Mounting evidence has demonstrated that HNF4α is commonly downregulated and serves as a tumor suppressor in the HCC. Enhancing the HNF4α mRNA translation through a specific synthetic antisense long non-coding RNA, profoundly affects both EMT and onco-metabolic modules in HCC cells. HNF4α overexpression decreased featured mesenchymal transcription factors and improved hepatocytic function, decelerated glycolysis, accelerated gluconeogenesis, and improved dysregulated cholesterol metabolism. Moreover, HNF4α overexpression inhibited the migration, invasion, and proliferation of HCC cells and decreased metastasis rate and tumor growth in xenografted nude mice. Our findings suggest a central regulatory role for HNF4α through its broad access to a wide variety of gene promoters involved in EMT and the Warburg effect in human hepatocytes. This essential impact indicates that HNF4α may be a potential target for HCC treatment., (© 2022 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association.)
- Published
- 2023
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21. A placenta-on-a-chip model to determine the regulation of FKBPL and galectin-3 in preeclampsia.
- Author
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Ghorbanpour SM, Richards C, Pienaar D, Sesperez K, Aboulkheyr Es H, Nikolic VN, Karadzov Orlic N, Mikovic Z, Stefanovic M, Cakic Z, Alqudah A, Cole L, Gorrie C, McGrath K, Kavurma MM, Ebrahimi Warkiani M, and McClements L
- Subjects
- Pregnancy, Female, Humans, Galectin 3 genetics, Galectin 3 metabolism, Trophoblasts metabolism, Human Umbilical Vein Endothelial Cells metabolism, Cell Cycle Proteins metabolism, Lab-On-A-Chip Devices, Tacrolimus Binding Proteins metabolism, Placenta metabolism, Pre-Eclampsia
- Abstract
Preeclampsia is a pregnancy-specific cardiovascular disorder, involving significant maternal endothelial dysfunction. Although inappropriate placentation due to aberrant angiogenesis, inflammation and shallow trophoblast invasion are the root causes of preeclampsia, pathogenic mechanisms are poorly understood, particularly in early pregnancy. Here, we first confirm the abnormal expression of important vascular and inflammatory proteins, FK506-binding protein-like (FKBPL) and galectin-3 (Gal-3), in human plasma and placental tissues from women with preeclampsia and normotensive controls. We then employ a three-dimensional microfluidic placental model incorporating human umbilical vein endothelial cells (HUVECs) and a first trimester trophoblast cell line (ACH-3P) to investigate FKBPL and Gal-3 signaling in inflammatory conditions. In human samples, both circulating (n = 17 controls; n = 30 preeclampsia) and placental (n ≥ 6) FKBPL and Gal-3 levels were increased in preeclampsia compared to controls (plasma: FKBPL, p < 0.0001; Gal-3, p < 0.01; placenta: FKBPL, p < 0.05; Gal-3, p < 0.01), indicative of vascular dysfunction in preeclampsia. In our placenta-on-a-chip model, we show that endothelial cells are critical for trophoblast-mediated migration and that trophoblasts effectively remodel endothelial vascular networks. Inflammatory cytokine tumour necrosis factor-α (10 ng/mL) modulates both FKBPL and Gal-3 signaling in conjunction with trophoblast migration and impairs vascular network formation (p < 0.005). Our placenta-on-a-chip recapitulates aspects of inappropriate placental development and vascular dysfunction in preeclampsia., (© 2023. The Author(s).)
- Published
- 2023
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22. Anti-citrullinated histone monoclonal antibody CIT-013, a dual action therapeutic for neutrophil extracellular trap-associated autoimmune diseases.
- Author
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van der Linden M, Kumari S, Montizaan D, van Dalen S, Kip A, Foster M, Reinieren-Beeren I, Neubert E, Erpenbeck L, Waaijenberg K, Bruurmijn T, Te Poele R, van Zandvoort P, Vink P, Meldrum E, van Es H, and Chirivi RGS
- Subjects
- Animals, Mice, Anti-Inflammatory Agents, Epitopes metabolism, Histones metabolism, Neutrophils, Anti-Citrullinated Protein Antibodies pharmacology, Antibodies, Monoclonal pharmacology, Arthritis, Rheumatoid drug therapy, Autoimmune Diseases drug therapy, Extracellular Traps
- Abstract
Neutrophil extracellular traps (NETs) contribute to the pathophysiology of multiple inflammatory and autoimmune diseases. Targeting the NETosis pathway has demonstrated significant therapeutic potency in various disease models. Here, we describe a first-in-class monoclonal antibody (CIT-013) with high affinity for citrullinated histones H2A and H4, which inhibits NETosis and reduces tissue NET burden in vivo with significant anti-inflammatory consequences. We provide a detailed understanding of the epitope selectivity of CIT-013. Detection of CIT-013 epitopes in rheumatoid arthritis (RA) synovium provides evidence that RA is an autoimmune disease with excessive citrullinated NETs that can be targeted by CIT-013. We show that CIT-013 acts upon the final stage of NETosis, binding to its chromatin epitopes when plasma membrane integrity is compromised to prevent NET release. Bivalency of CIT-013 is necessary for NETosis inhibition. In addition, we show that CIT-013 binding to NETs and netting neutrophils enhance their phagocytosis by macrophages in an Fc-dependent manner. This is confirmed using a murine neutrophilic airway inflammation model where a mouse variant of CIT-013 reduced tissue NET burden with significant anti-inflammatory consequences. CIT-013's therapeutic activity provides new insights for the development of NET antagonists and indicates the importance of a new emerging therapy for NET-driven diseases with unmet therapeutic needs.
- Published
- 2023
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23. Hepatogenesis and hepatocarcinogenesis: Alignment of the main signaling pathways.
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Shokouhian B, Aboulkheyr Es H, Negahdari B, Tamimi A, Shahdoust M, Shpichka A, Timashev P, Hassan M, and Vosough M
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- Humans, Carcinogenesis genetics, Carcinogenesis pathology, Signal Transduction, Carcinoma, Hepatocellular metabolism, Liver Neoplasms metabolism
- Abstract
Development is a symphony of cells differentiation in which different signaling pathways are orchestrated at specific times and periods to form mature and functional cells from undifferentiated cells. The similarity of the gene expression profile in malignant and undifferentiated cells is an interesting topic that has been proposed for many years and gave rise to the differentiation-therapy concept, which appears a rational insight and should be reconsidered. Hepatocellular carcinoma (HCC), as the sixth common cancer and the third leading cause of cancer death worldwide, is one of the health-threatening complications in communities where hepatotropic viruses are endemic. Sedentary lifestyle and high intake of calories are other risk factors. HCC is a complex condition in which various dimensions must be addressed, including heterogeneity of cells in the tumor mass, high invasiveness, and underlying diseases that limit the treatment options. Under these restrictions, recognizing, and targeting common signaling pathways during liver development and HCC could expedite to a rational therapeutic approach, reprograming malignant cells to well-differentiated ones in a functional state. Accordingly, in this review, we highlighted the commonalities of signaling pathways in hepatogenesis and hepatocarcinogenesis, and comprised an update on the current status of targeting these pathways in laboratory studies and clinical trials., (© 2022 Wiley Periodicals LLC.)
- Published
- 2022
- Full Text
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24. Single-cell analysis of circulating tumour cells: enabling technologies and clinical applications.
- Author
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Radfar P, Aboulkheyr Es H, Salomon R, Kulasinghe A, Ramalingam N, Sarafraz-Yazdi E, Thiery JP, and Warkiani ME
- Subjects
- Cell Separation methods, Humans, Single-Cell Analysis, Neoplastic Cells, Circulating
- Abstract
Multimodal analysis of circulating tumour cells (CTCs) has the potential to provide remarkable insight for cancer development and metastasis. CTCs and CTC clusters investigation using single-cell analysis, enables researchers to gain crucial information on metastatic mechanisms and the genomic alterations responsible for drug resistance, empowering treatment, and management of cancer. Despite a plethora of CTC isolation technologies, careful attention to the strengths and weaknesses of each method should be considered in order to isolate these rare cells. Here, we provide an overview of cutting-edge technologies used for single-cell isolation and analysis of CTCs. Additionally, we highlight the biological features, clinical application, and the therapeutic potential of CTCs and CTC clusters using single-cell analysis platforms for cancer management., Competing Interests: Declaration of interests N.R. is an employee and stockholder of Fluidigm Corporation. E.S.Y. is an employee and stockholder of NomoCan Corporation. All other authors declare no competing interests., (Copyright © 2022 Elsevier Ltd. All rights reserved.)
- Published
- 2022
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25. Copy Number Variation of Circulating Tumor DNA (ctDNA) Detected Using NIPT in Neoadjuvant Chemotherapy-Treated Ovarian Cancer Patients.
- Author
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Sharbatoghli M, Fattahi F, Aboulkheyr Es H, Akbari A, Akhavan S, Ebrahimi M, Asadi-Lari M, Totonchi M, and Madjd Z
- Abstract
Analysis of circulating tumor DNA (ctDNA) can be used to characterize and monitor cancers. Recently, non-invasive prenatal testing (NIPT) as a new next-generation sequencing (NGS)-based approach has been applied for detecting ctDNA. This study aimed to investigate the copy number variations (CNVs) utilizing the non-invasive prenatal testing in plasma ctDNA from ovarian cancer (OC) patients who were treated with neoadjuvant chemotherapy (NAC). The plasma samples of six patients, including stages II-IV, were collected during the pre- and post-NAC treatment that were divided into NAC-sensitive and NAC-resistant groups during the follow-up time. CNV analysis was performed using the NIPT via two methods "an open-source algorithm WISECONDORX and NextGENe software." Results of these methods were compared in pre- and post-NAC of OC patients. Finally, bioinformatics tools were used for data mining from The Cancer Genome Atlas (TCGA) to investigate CNVs in OC patients. WISECONDORX analysis indicated fewer CNV changes on chromosomes before treatment in the NAC-sensitive rather than NAC-resistant patients. NextGENe data indicated that CNVs are not only observed in the coding genes but also in non-coding genes. CNVs in six genes were identified, including HSF1, TMEM249, MROH1, GSTT2B, ABR, and NOMO2, only in NAC-resistant patients. The comparison of these six genes in NAC-resistant patients with The Cancer Genome Atlas data illustrated that the total alteration frequency is amplification, and the highest incidence of the CNVs (≥35% based on TCGA data) is found in MROH1, TMEM249, and HSF1 genes on the chromosome (Chr) 8. Based on TCGA data, survival analysis showed a significant reduction in the overall survival among chemotherapy-resistant patients as well as a high expression level of these three genes compared to that of sensitive samples (all, p < 0.0001). The continued Chr8 study using WISECONDORX revealed CNV modifications in NAC-resistant patients prior to NAC therapy, but no CNV changes were observed in NAC-sensitive individuals. Our findings showed that low coverage whole-genome sequencing analysis used for NIPT could identify CNVs in ctDNA of OC patients before and after chemotherapy. These CNVs are different in NAC-sensitive and -resistant patients highlighting the potential application of this approach in cancer patient management., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Sharbatoghli, Fattahi, Aboulkheyr Es, Akbari, Akhavan, Ebrahimi, Asadi-Lari, Totonchi and Madjd.)
- Published
- 2022
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26. Developing indicators and measures of high-quality for Australian general practice.
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Metusela C, Cochrane N, van Werven H, Usherwood T, Ferdousi S, Messom R, O'Halloran D, Fasher M, Page A, Trankle S, Abbott P, Tannous WK, Peters K, Meisinger K, and Reath J
- Subjects
- Australia, Family Practice, Humans, Quality Improvement, General Practice, General Practitioners
- Abstract
Background: Rising health costs and health inequity are major challenges in Australia, as internationally. Strong primary health care is well evidenced to address these challenges. Primary Health Networks (PHNs) work with general practices to collect data and support quality improvement; however, there is no consensus regarding what defines high quality. This paper describes the development of an evidence-based suite of indicators and measures of high-quality general practice for the Australian context., Methods: We reviewed the literature to develop a suitable framework and revise quality assurance measures currently in use, then reviewed these in three workshops with general practitioners, practice managers, nurses, consumers and PHN staff in western Sydney. We used a descriptive qualitative research approach to analyse the data., Results: A total of 125 evidence-based indicators were agreed to be relevant, and 80 were deemed both relevant and feasible. These were arranged across a framework based on the Quadruple Aim, and include structure, process and outcome measures., Conclusions: The agreed suite of indicators and measures will be further validated in collaboration with PHNs across Australia. This work has the potential to inform health systems innovation both nationally and internationally.
- Published
- 2022
- Full Text
- View/download PDF
27. Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database.
- Author
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Moradi S, Kamal A, Aboulkheyr Es H, Farhadi F, Ebrahimi M, Chitsaz H, Sharifi-Zarchi A, and Baharvand H
- Subjects
- Databases, Factual, Gene Expression Regulation, Neoplastic, Gene Ontology, Humans, MicroRNAs genetics, MicroRNAs metabolism, Neoplasms genetics
- Abstract
Background: MicroRNAs (miRNAs) are frequently deregulated in various types of cancer. While antisense oligonucleotides are used to block oncomiRs, delivery of tumour-suppressive miRNAs holds great potential as a potent anti-cancer strategy. Here, we aim to determine, and functionally analyse, miRNAs that are lowly expressed in various types of tumour but abundantly expressed in multiple normal tissues., Methods: The miRNA sequencing data of 14 cancer types were downloaded from the TCGA dataset. Significant differences in miRNA expression between tumor and normal samples were calculated using limma package (R programming). An adjusted p value < 0.05 was used to compare normal versus tumor miRNA expression profiles. The predicted gene targets were obtained using TargetScan, miRanda, and miRDB and then subjected to gene ontology analysis using Enrichr. Only GO terms with an adjusted p < 0.05 were considered statistically significant. All data from wet-lab experiments (cell viability assays and flow cytometry) were expressed as means ± SEM, and their differences were analyzed using GraphPad Prism software (Student's t test, p < 0.05)., Results: By compiling all publicly available miRNA profiling data from The Cancer Genome Atlas (TCGA) Pan-Cancer Project, we reveal a small set of tumour-suppressing miRNAs (which we designate as 'normomiRs') that are highly expressed in 14 types of normal tissues but poorly expressed in corresponding tumour tissues. Interestingly, muscle-enriched miRNAs (e.g. miR-133a/b and miR-206) and miRNAs from DLK1-DIO3 locus (e.g. miR-381 and miR-411) constitute a large fraction of the normomiRs. Moreover, we define that the CCCGU motif is absent in the oncomiRs' seed sequences but present in a fraction of tumour-suppressive miRNAs. Finally, the gain of function of candidate normomiRs across several cancer cell types indicates that miR-206 and miR-381 exert the most potent inhibition on multiple cancer types in vitro., Conclusion: Our results reveal a pan-cancer set of tumour-suppressing miRNAs and highlight the potential of miRNA-replacement therapies for targeting multiple types of tumour., Competing Interests: SM is an academic editor at PLoS One. All other authors declare that they have no conflicts of interest.
- Published
- 2022
- Full Text
- View/download PDF
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