36 results on '"Wen-Jie Wu"'
Search Results
2. Impact of Dataset Size on 3D CNN Performance in Intracranial Hemorrhage Classification
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Chun-Chao Huang, Hsin-Fan Chiang, Cheng-Chih Hsieh, Bo-Rui Zhu, Wen-Jie Wu, and Jin-Siang Shaw
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intracranial hemorrhage ,deep learning ,3D convolutional neural networks ,artificial intelligence ,CT ,Medicine (General) ,R5-920 - Abstract
Background: This study aimed to evaluate the effect of sample size on the development of a three-dimensional convolutional neural network (3DCNN) model for predicting the binary classification of three types of intracranial hemorrhage (ICH): intraparenchymal, subarachnoid, and subdural (IPH, SAH, SDH, respectively). Methods: During the training, we compiled all images of each brain computed tomography scan into a single 3D image, which was then fed into the model to classify the presence of ICH. We divided the non-hemorrhage quantities into 20, 30, 40, 50, 100, and 150 and the ICH quantities into 20, 30, 40, and 50. Cross-validation was performed to compute the average area under the curve (AUC) over the last five iterations. The AUC and accuracy were used to evaluate the performance of the models. Results: Fifty patients, each with the three ICH types, and 150 non-hemorrhage cases were enrolled. Larger sample sizes achieved stable and acceptable performance in the artificial intelligence (AI) models, whereas training with a limited number of cases posed the risk of falsely high AUC values or accuracy. The overall trends and fluctuations in AUC values were similar between IPH and SDH but different for SAH. The accuracy of the results was relatively consistent among the three ICH types. Conclusions: The 3DCNN technique can be used to develop AI models capable of detecting ICH from limited case numbers. However, a minimal case number must be provided. The performance of AI models varies across different ICH types and is more stable with larger sample sizes.
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- 2025
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3. Applying the Simulated Annealing Algorithm to the Set Orienteering Problem with Mandatory Visits
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Shih-Wei Lin, Sirui Guo, and Wen-Jie Wu
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set orienteering problem ,mandatory visits ,dynamic programming ,simulated annealing algorithm ,Mathematics ,QA1-939 - Abstract
This study addresses the set orienteering problem with mandatory visits (SOPMV), a variant of the team orienteering problem (SOP). In SOPMV, certain critical sets must be visited. The study began by formulating the mathematical model for SOPMV. To tackle the challenge of obtaining a feasible route within time constraints using the original MILP approach, a two-stage mixed-integer linear programming (MILP) model is proposed. Subsequently, a simulated annealing (SA) algorithm and a dynamic programming method were employed to identify the optimal route. The proposed SA algorithm was used to solve the SOP and was compared to other algorithms, demonstrating its effectiveness. The SA was then applied to solve the SOPMV problem. The results indicate that the solutions obtained using SA are superior and more efficient compared to those derived from the original MILP and the two-stage MILP. Additionally, the results reveal that the solution quality deteriorates as the ratio of the set of mandatory visits increases or the maximum allowable travel time decreases. This study represents the first attempt to integrate mandatory visits into SOP, thereby establishing a new research direction in this area. The potential impact of this research is significant, as it introduces new possibilities for addressing complex combinatorial optimization problems.
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- 2024
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4. Corrigendum: Neoadjuvant tislelizumab combined with chemotherapy in locally advanced oral or oropharyngeal squamous cell carcinoma: a real−world retrospective study
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Wen-Jie Wu, Qian Liu, Pu-Gen An, Lin Wang, Jian-Yun Zhang, Yan Chen, Tong Zhang, and Jie Zhang
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neoadjuvant ,immunotherapy ,chemotherapy ,head and neck ,squamous cell carcinoma ,Immunologic diseases. Allergy ,RC581-607 - Published
- 2024
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5. Tislelizumab plus nimotuzumab is effective against recurrent or metastatic oral squamous cell carcinoma among patients with a performance status score ≥ 2: a retrospective study
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Wen-Jie Wu, Pu-Gen An, Yi-Wei Zhong, Xiao Hu, Lin Wang, and Jie Zhang
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tislelizumab ,nimotuzumab ,immunotherapy ,oral squamous cell carcinoma ,performance status score ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
ObjectivesThe efficacy of treatments targeting recurrent or metastatic head and neck squamous cell carcinoma are unsatisfactory in practice for patients with a ECOG PS score ≥ 2. Thus, this study retrospectively evaluated the safety and efficacy of a programmed cell death 1 inhibitor (tislelizumab) combined with an epidermal growth factor receptor inhibitor (nimotuzumab) in treating patients with a PS score ≥ 2 who suffer from recurrent or metastatic oral squamous cell carcinoma (OSCC).Materials and methodsFifteen patients were treated with tislelizumab (200 mg IV Q3W) and nimotuzumab (200 mg IV Q3W). Programmed cell death-ligand 1 (PD-L1) expression in tumor biopsies was assessed with immunohistochemistry. Whole-exome sequencing was used to evaluate treatment efficacy based on PD-L1 expression and gene mutation.ResultsAt a median follow-up of 9.6 months, median overall survival was 10.1 months, and median progression-free survival was 4.0 months. Overall response rate was 40%, with 6/15 patients achieving partial response. Eight patients exhibited nine adverse events, eight out of nine being grade 2 and the remaining being grade 3. Whole-exome sequencing showed that DYNC1I2, THSD7A, and FAT1 mutations were associated with patient prognosis.ConclusionCombination therapy involving tislelizumab plus nimotuzumab is a promising, low-toxicity treatment for recurrent or metastatic OSCC in patients with a PS score ≥ 2.
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- 2024
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6. Neoadjuvant tislelizumab combined with chemotherapy in locally advanced oral or oropharyngeal squamous cell carcinoma: a real−world retrospective study
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Wen-Jie Wu, Qian Liu, Pu-Gen An, Lin Wang, Jian-Yun Zhang, Yan Chen, Tong Zhang, and Jie Zhang
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neoadjuvant ,immunotherapy ,chemotherapy ,head and neck ,squamous cell carcinoma ,Immunologic diseases. Allergy ,RC581-607 - Abstract
ObjectivesThe treatment of locally advanced oral or oropharyngeal squamous cell carcinoma (LAOOPSCC) is surgery and radiotherapy or chemoradiotherapy but with unsatisfactory survival rate. Neoadjuvant programmed death-1 (PD-1) therapy are being used in several clinical trials. Therefore, in this retrospective study we aimed to determine the feasibility of neoadjuvant tislelizumab plus chemotherapy followed by surgery for LAOOPSCC.Materials and methodsThe clinical data of 33 patients with LAOOPSCC who received neoadjuvant PD-1 inhibitors and chemotherapy between April 2021 and October 2022 were retrospectively analyzed. Patients with stage III-IV LAOOPSCC received tislelizumab, albumin-bound paclitaxel, and cisplatin every 3 weeks (Q3W) for two cycles, followed by surgery and adjuvant radiotherapy or concurrent chemoradiotherapy. A median follow-up period was 20 months.ResultsThe objective response rate (ORR) was 66.7%, with the major pathological response (MPR) rate at 54.5%, and the pathological complete response (pCR) rate was 33.3%. Sixteen patients underwent limited surgeries, and 15 patients were remitted from undergoing mandibulectomy and 9 patients were remitted from undergoing near total glossectomy or total glossectomy. A significant difference in the overall survival (OS) and disease-free survival (DFS) was observed in patients who achieved major pathological response (MPR) than who did not. The most common adverse events in neoadjuvant therapy were alopecia, decreased appetite or anorexia, leukopenia, and fatigue.ConclusionNeoadjuvant PD-1 inhibitors combined with chemotherapy are feasible and safe, with a high pathological response and possible organ preservation in oral or oropharyngeal squamous cell carcinoma. However, further studies with a larger cohort of patients and longer follow-up period is required to strengthen our findings and evaluate the survival benefits of the treatment.
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- 2023
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7. Deep learning-based two-step organs at risk auto-segmentation model for brachytherapy planning in parotid gland carcinoma
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Zhen-Yu Li, Jing-hua Yue, Wei Wang, Wen-Jie Wu, Fu-gen Zhou, Jie Zhang, and Bo Liu
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automatic segmentation ,organs at risk ,parotid gland cancer ,brachytherapy ,Medicine - Published
- 2022
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8. Association analysis and functional follow-up identified common variants of JAG1 accounting for risk to biliary atresia
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Mei-Rong Bai, Hao-Yue Pei, Ying Zhou, Huan-Lei Song, Wei-Hua Pan, Yi-Ming Gong, Wen-Jie Wu, Wen-Wen Yu, Meng-Meng Cui, Bei-Lin Gu, Xun Chu, and Wei Cai
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biliary atresia ,JAG1 ,single nucleotide polymorphisms ,zebrafish ,bile ducts ,Genetics ,QH426-470 - Abstract
Background: Biliary atresia (BA) is a destructive, obliterative cholangiopathy characterized by progressive fibro-inflammatory disorder and obliteration of intra- and extrahepatic bile ducts. The Jagged1 (JAG1) gene mutations have been found in some isolated BA cases. We aim to explore the association of common variants in JAG1 with isolated BA risk in the Chinese Han population.Methods: We genotyped 31 tag single nucleotide polymorphisms covering the JAG1 gene region in 333 BA patients and 1,665 healthy controls from the Chinese population, and performed case-control association analysis. The expression patterns of JAG1 homologs were investigated in zebrafish embryos, and the roles of jag1a and jag1b in biliary development were examined by morpholino knockdown in zebrafish.Results: Single nucleotide polymorphisms rs6077861 [PAllelic = 1.74 × 10−4, odds ratio = 1.78, 95% confidence interval: 1.31–2.40] and rs3748478 (PAllelic = 5.77 × 10−4, odds ratio = 1.39, 95% confidence interval: 1.15–1.67) located in the intron region of JAG1 showed significant associations with BA susceptibility. The JAG1 homologs, jag1a and jag1b genes were expressed in the developing hepatobiliary duct of zebrafish, especially at 72 and 96 h postfertilization. Knockdown of both jag1a and jag1b led to poor biliary secretion, sparse intrahepatic bile duct network and smaller or no gallbladders compared with control embryos in the zebrafish model.Conclusion: Common genetic variants of JAG1 were associated with BA susceptibility. Knockdown of JAG1 homologs led to defective intrahepatic and extrahepatic bile ducts in zebrafish. These results suggest that JAG1 might be implicated in the etiology of BA.
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- 2023
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9. Use of Non-Verbal Representations to Define Concept of Pulse Conditions in Traditional Chinese Medicine Standards
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Chun-Ke Zhang, Yi-Qin Wang, Rui Guo, Hai-Xia Yan, Jian-Jun Yan, Wen-Jie Wu, Jing Li, and Su Lin
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Other systems of medicine ,RZ201-999 - Abstract
Abstract. The standardization of terms and definitions is fundamental to all activities in the domain of traditional Chinese medicine (TCM). For decades, definitions of TCM terminology relied on conventional verbal representations to differentiate between related concepts. However, the ancient Chinese is obscure and comprises a massive volume of information, making it difficult to convey the definition accurately in other languages. This article proposes a potential solution that the definition for pulse terminology can be supplemented by modern means of non-verbal representation, i.e., using pulse waveform graphs and parameters to complete the definition of each pulse. A discussion of the challenges of obtaining reliable data is also included.
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- 2022
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10. Transcriptomic insights into adenoid cystic carcinoma via RNA sequencing
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Yu-Fang Tang, Pu-Gen An, Bao-Xin Gu, Shu Yi, Xiao Hu, Wen-Jie Wu, and Jie Zhang
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adenoid cystic carcinoma (ACC) ,RNA sequencing ,gene fusions ,cancer germline antigens ,mRNA ,Genetics ,QH426-470 - Abstract
Background: The aim of this study was to investigate the underlying mechanisms of adenoid cystic carcinoma (ACC) at the transcriptome level.Materials and methods: We obtained paired tumor and normal salivary gland tissues from 15 ACC patients, which were prepared for RNA sequencing.Results: Gene enrichment analysis revealed that the upregulated pathways were mainly involved in axonogenesis, and the downregulated pathways were mainly related to leukocyte migration, the adaptive immune response, lymphocyte-mediated immunity, and the humoral immune response. T-cells, B-cells and NK cells showed low infiltration in ACC tissues. In addition to the gene fusions MYB-NFIB and MYBL1-NFIB, a new gene fusion, TVP23C-CDRT4, was also detected in 3 ACC tissues. PRAME was significantly upregulated in ACC tissues, while antigen-presenting human leukocyte antigen (HLA) genes were downregulated.Conclusion: We found a new gene fusion, TVP23C-CDRT4, that was highly expressed in ACC. PRAME may be an attractive target for ACC immunotherapy.
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- 2023
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11. Modeling and Analysis of Voltage Harmonic for Three-Level Neutral-Point-Clamped H-Bridge Inverter Considering Dead-Time
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Wen-Jie Wu, Liang-Deng Hu, Zi-Yue Xin, and Cheng Guo
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dead-time ,3L-NPC H-bridge ,voltage harmonic ,analytical modelling ,Technology - Abstract
The advantages of three-level neutral-point-clamped (NPC) H-bridge inverters, such as simple topological structure, low device voltage stress, high equivalent switching frequency, and highly expansible capacity, have made them the preferred choice for inverters matching with medium voltage high-capacity multi-phase open-end winding vessel propulsion motors. To quantitatively evaluate the propulsion motors’ harmonics, electromagnetic vibration, and noise caused by pulse-width modulation (PWM) and device dead-time, it is necessary to research the mathematical modeling of pulse-width modulated output voltage harmonics in consideration of dead-time. In this paper, the principle of the phase-disposition PWM method of the 3L-NPC H-bridge inverters was firstly introduced. Then, the analytical models of output voltage harmonics with and without considering the effect of dead-time were established based on the double Fourier series approach and the harmonic distribution of the dead-time effect was accurately characterized. On the basis of the above, the experimental platform was established to verify the proposed analytical model. Simulation and experimental results are consistent with the theoretical analysis in low and high-frequency output voltage harmonics, which proves the correctness and the feasibility of the analytical modeling method researched by this paper. This will provide a theoretical basis for subsequent studies, which include the quantitative analysis and the suppression of output harmonics of the H-bridge inverter considering dead-time.
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- 2022
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12. Qualitative and Quantitative Analysis of Ejiao-Related Animal Gelatins through Peptide Markers Using LC-QTOF-MS/MS and Scheduled Multiple Reaction Monitoring (MRM) by LC-QQQ-MS/MS
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Wen-Jie Wu, Li-Feng Li, Hau-Yee Fung, Hui-Yuan Cheng, Hau-Yee Kong, Tin-Long Wong, Quan-Wei Zhang, Man Liu, Wan-Rong Bao, Chu-Ying Huo, Shangwei Guo, Haibin Liu, Xiangshan Zhou, Deng-Feng Gao, and Quan-Bin Han
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authentication ,Ejiao ,gelatin ,peptide marker ,database-independent strategy ,de novo sequencing ,Organic chemistry ,QD241-441 - Abstract
Donkey-hide gelatin, also called Ejiao (colla corii asini), is commonly used as a food health supplement and valuable Chinese medicine. Its growing popular demand and short supply make it a target for fraud, and many other animal gelatins can be found as adulterants. Authentication remains a quality concern. Peptide markers were developed by searching the protein database. However, donkeys and horses share the same database, and there is no specific marker for donkeys. Here, solutions are sought following a database-independent strategy. The peptide profiles of authentic samples of different animal gelatins were compared using LC-QTOF-MS/MS. Fourteen specific markers, including four donkey-specific, one horse-specific, three cattle-specific, and six pig-specific peptides, were successfully found. As these donkey-specific peptides are not included in the current proteomics database, their sequences were determined by de novo sequencing. A quantitative LC-QQQ multiple reaction monitoring (MRM) method was further developed to achieve highly sensitive and selective analysis. The specificity and applicability of these markers were confirmed by testing multiple authentic samples and 110 batches of commercial Ejiao products, 57 of which were found to be unqualified. These results suggest that these markers are specific and accurate for authentication purposes.
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- 2022
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13. Qualitative and Quantitative Analysis of Edible Bird’s Nest Based on Peptide Markers by LC-QTOF-MS/MS
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Wen-Jie Wu, Li-Feng Li, Hui-Yuan Cheng, Hau-Yee Fung, Hau-Yee Kong, Tin-Long Wong, Quan-Wei Zhang, Man Liu, Wan-Rong Bao, Chu-Ying Huo, and Quan-Bin Han
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edible bird’s nest ,peptide markers ,qualitative and quantitative analysis ,Organic chemistry ,QD241-441 - Abstract
Edible bird’s nest (EBN) is an expensive health food. There are many adulterants in the market. It remains challenging to discriminate EBN from its adulterants due to a lack of high-specificity markers. Besides, the current markers are confined to soluble fraction of EBN. Here, both soluble and insoluble fractions were analyzed by LC-QTOF-MS/MS. A total of 26 high-specificity peptides that were specific to EBN were selected as qualitative authentication markers. Among them, 10 markers can discriminate EBN from common adulterants, 13 markers discriminate white EBN from grass EBN/common adulterants, and 3 markers discriminate grass EBN from white EBN/common adulterants. Three of them, which showed high signal abundance (Peak area ≥ 106) and satisfactory linearity (R2 ≥ 0.995) with EBN references, were selected as the assay marker; and their peptide sequences were confidently identified by searching database/de novo sequencing. Based on these markers, a qualitative and quantitative analytical method was successfully developed and well-validated in terms of linearity, precision, repeatability, and accuracy. The method was subsequently applied to detect EBN products on the market. The results indicated that more than half of EBN products were not consistent with what the merchants claimed.
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- 2022
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14. Sleep and academic performance among students in Hong Kong: Curvilinear relationship suggesting an optimal amount of sleep
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Ngan Yin Chan, Wen Jie Wu, Joey Wing Yan Chan, Kate Ching Ching Chan, Albert Martin Li, Sandra Sau Man Chan, Kit Tai Hau, and Yun Kwok Wing
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General Medicine - Published
- 2023
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15. How strategic, offensive, and defensive engagement impact gamers' need satisfaction, loyalty, and game usage.
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Ching-I Teng, Tzu-Ling Huang, Zhuo-Han Yang, Wen-Jie Wu, and Gen-Yih Liao
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- 2022
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16. Nerve Growth Factor/Tyrosine Kinase A Receptor Pathway Enhances Analgesia in an Experimental Mouse Model of Bone Cancer Pain by Increasing Membrane Levels of δ-Opioid Receptors.
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Bu-Fan Kan, Xing-Yun Liu, Ming-Ming Han, Cheng-Wei Yang, Xia Zhu, Yan Jin, Di Wang, Xiang Huang, Wen-Jie Wu, Tong Fu, Fang Kang, Zhi Zhang, and Juan Li
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- 2024
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17. Frictional melting and thermal pressurization during seismic slip controlled by drainage
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Wen-Jie Wu, Li-Wei Kuo, Chia-Wei Kuo, Wei-Hsin Wu, and Hwo‐Shuenn Sheu
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frictional melting and thermal pressurization are commonly proposed to reduce dynamic shear resistance along a fault during earthquake propagation. The key factor on triggering either thermal pressurization or frictional melting may be the hydraulic properties of surrounding rock. Observations in Taiwan Chelungpu-fault drilling project (TCDP) Hole-A and Hole-B suggest that frictional melting and thermal pressurization occurred along the fault during the Mw 7.6 Chi-Chi earthquake, but the underlying process is still unclear. Here, we present the microstructural observation in experimental and natural fault gouge, the mechanical data at seismic rate and mineralogical characteristics. Results show that amorphous material only occurred at drained condition. Taken together, these results imply that the difference between Hole-A and Hole-B is attributed to the drainage.
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- 2023
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18. Single-cell RNA sequencing reveals the heterogeneity and microenvironment in one adenoid cystic carcinoma sample
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Pu-Gen An, Wen-Jie Wu, Yu-Fang Tang, and Jie Zhang
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Genetics ,General Medicine - Published
- 2023
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19. The use of modified 3D-printed reconstruction plates in mandible segmental defect rehabilitation: a case report
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Yi-Wei Zhong, Zuo-Sen Wang, Wen-Jie Wu, and Jie Zhang
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The preliminary safety and accuracy of a modified 3D-printed reconstruction plate (3DPRP) for mandible segmental defects were evaluated. Two patients with mandible segmental defects who underwent reconstruction using 3DPRPs were included in the study. No dead space, wound healing failures or fractures were observed. The mean deviations for the two patients were 0.59 and 0.57 mm and the condyle changes were 1.01 and 0.88 mm, respectively. The deviations in the distances between both sides of the mandibles (D1–6) ranged from 0.67 to 1.16 mm and from 0.43 to 0.61 mm for the two patients. The preliminary results show that the modified 3DPRPs are safe and accurate.
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- 2022
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20. Neoadjuvant tislelizumab combined with chemotherapy in locally advanced oral or oropharyngeal squamous cell carcinoma: a real-world retrospective study.
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Wen-Jie Wu, Qian Liu, Pu-Gen An, Lin Wang, Jian-Yun Zhang, Yan Chen, Tong Zhang, and Jie Zhang
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CHEMORADIOTHERAPY ,SQUAMOUS cell carcinoma ,NEOADJUVANT chemotherapy ,CANCER chemotherapy ,PRESERVATION of organs, tissues, etc. ,PROGRESSION-free survival ,RECTAL cancer - Abstract
Objectives: The treatment of locally advanced oral or oropharyngeal squamous cell carcinoma (LAOOPSCC) is surgery and radiotherapy or chemoradiotherapy but with unsatisfactory survival rate. Neoadjuvant programmed death-1 (PD-1) therapy are being used in several clinical trials. Therefore, in this retrospective study we aimed to determine the feasibility of neoadjuvant tislelizumab plus chemotherapy followed by surgery for LAOOPSCC. Materials and methods: The clinical data of 33 patients with LAOOPSCC who received neoadjuvant PD-1 inhibitors and chemotherapy between April 2021 and October 2022 were retrospectively analyzed. Patients with stage III-IV LAOOPSCC received tislelizumab, albumin-bound paclitaxel, and cisplatin every 3 weeks (Q3W) for two cycles, followed by surgery and adjuvant radiotherapy or concurrent chemoradiotherapy. A median follow-up period was 20 months. Results: The objective response rate (ORR) was 66.7%, with the major pathological response (MPR) rate at 54.5%, and the pathological complete response (pCR) rate was 33.3%. Sixteen patients underwent limited surgeries, and 15 patients were remitted from undergoing mandibulectomy and 9 patients were remitted from undergoing near total glossectomy or total glossectomy. A significant difference in the overall survival (OS) and disease-free survival (DFS) was observed in patients who achieved major pathological response (MPR) than who did not. The most common adverse events in neoadjuvant therapy were alopecia, decreased appetite or anorexia, leukopenia, and fatigue. Conclusion: Neoadjuvant PD-1 inhibitors combined with chemotherapy are feasible and safe, with a high pathological response and possible organ preservation in oral or oropharyngeal squamous cell carcinoma. However, further studies with a larger cohort of patients and longer follow-up period is required to strengthen our findings and evaluate the survival benefits of the treatment. [ABSTRACT FROM AUTHOR]
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- 2024
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21. Study on migration characteristics of pollutants in groundwater at a proposed hazardous waste landfill
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A. Fa-you, Rui Wang, Xue-gang Dai, Wen-jie Wu, and Shi-qun Yan
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General Engineering - Abstract
Objective: The paper aims to analyze the hydrogeological conditions of a proposed hazardous waste landfill and the migration characteristics of lead, zinc, and nickel in fractured aquifers and porous aquifers under accident conditions and provide a reference for the influence of the proposed landfill on groundwater. Method: In this study, based on a 1:50000 regional hydrogeological survey and 1:2000 site hydrogeological mapping, the hydrogeological conceptual model was established. Finite difference software GMS was used to analyze the migration characteristics. Results: The study demonstrated that when the pollutants in the hazardous waste landfill leaked, they migrated from northeast to southwest along the gully. The pollutants in the porous aquifer migrated quickly, and the polluted area expanded rapidly from point to surface. The pollutants migration in fractured aquifers was slow, and the groundwater quality was deteriorating continuously. During the simulation period, the pollutants of lead, zinc and nickel all polluted the aquifer. Among them, the lead pollution range w reported to be the largest, with an exceeding distance of 216.7m; the zinc pollution range was the smallest, with an exceeding distance of 33.3m, and the exceeding distance of nickel was 165.1m. Conclusion: In order to ensure the safety of the groundwater environment in the simulated area, the impervious treatment must be carried out according to the requirements of the proposed hazardous waste landfill. Meantime, an emergency plan should be formulated.
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- 2023
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22. A novel method for assessing cardiac function in patients with coronary heart disease based on wrist pulse analysis
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Wen-jie Wu, Rui Chen, Rui Guo, Jian-jun Yan, Chun-ke Zhang, Yi-qin Wang, Hai-xia Yan, and Ye-qing Zhang
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General Medicine - Abstract
Background The timely assessment of B-type natriuretic peptide (BNP) marking chronic heart failure risk in patients with coronary heart disease (CHD) helps to reduce patients’ mortality. Objective To evaluate the potential of wrist pulse signals for use in the cardiac monitoring of patients with CHD. Methods A total of 419 patients with CHD were assigned to Group 1 (BNP n = 249), 2 (95 n = 85), and 3 (BNP > 221 pg/mL, n = 85) according to BNP levels. Wrist pulse signals were measured noninvasively. Both the time-domain method and multiscale entropy (MSE) method were used to extract pulse features. Decision tree (DT) and random forest (RF) algorithms were employed to construct models for classifying three groups, and the models’ performance metrics were compared. Results The pulse features of the three groups differed significantly, suggesting different pathological states of the cardiovascular system in patients with CHD. Moreover, the RF models outperformed the DT models in performance metrics. Furthermore, the optimal RF model was that based on a dataset comprising both time-domain and MSE features, achieving accuracy, average precision, average recall, and average F1-score of 90.900%, 91.048%, 90.900%, and 90.897%, respectively. Conclusions The wrist pulse detection technology employed in this study is useful for assessing the cardiac function of patients with CHD.
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- 2023
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23. Effect of oxygen on the germination and culturability of Bacillus atrophaeus spores
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Wen Jie Wu and Jinhui Chang
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Oxygen ,Spores ,Spores, Bacterial ,Microbiology (medical) ,Bacterial Proteins ,Bacillus ,Microbiology - Abstract
The effect of oxygen on the germination and culturability of aerobic Bacillus atrophaeus spores was investigated in this study. Under oxic or anoxic conditions, various nutritional and non-nutritional germinants were utilized to induce germination. Tb3+-dipicolinic acid fluorescence assay and phase-contrast microscopy were used to track the germination process. The final germination level, germination half time, and germination speed were used to define germination kinetics. Colony-forming unit enumeration was used to assess the culturability of germinated spores germinated with or without oxygen. The results show that in the absence of oxygen, the final germination level was unaffected, germination half time decreased by up to 35.0%, germination speed increased by up to 27.4%, and culturability decreased by up to 95.1%. It is suggested that oxygen affects some germinant receptor-dependent germination pathways, implying that biomolecules engaged in these pathways may be oxygen-sensitive. Furthermore, spores that have completed the germination process in either anoxic or oxic conditions may have different culturability. This research contributed to a better understanding of the fundamental mechanism of germination.
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- 2022
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24. Revisit the Classical Newmark Displacement Analysis for Earthquake-Induced Wedge Sliding of Rock Slope
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Che-Ming Yang, Jia-Jyun Dong, Chyi-Tyi Lee, Hui-Yun Cheng, Chang-Hsuan Hsu, Thi-Phuong Nguyen, Chun-Jung Lai, and Wen-Jie Wu
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- 2023
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25. A novel method for Assessing Cardiac Function in Patients with Coronary Heart Disease based on Wrist Pulse Analysis (Preprint)
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Wen-jie Wu, Rui CHEN, Rui GUO, Jian-jun YAN, Chun-ke ZHANG, Yi-qin WANG, Hai-xia YAN, and Ye-qing ZHANG
- Abstract
BACKGROUND Chronic heart failure is a serious complication of the terminal stage of coronary heart disease (CHD); both disorders are leading causes of death. B-type natriuretic peptide (BNP) is a plasma biomarker of the presence and severity of chronic heart failure. Therefore, the timely assessment of the BNP levels and detection of pathological cardiovascular changes are critical for chronic heart failure prevention in patients with CHD. Novel instruments for wrist pulse detection include wearable devices that can be used to obtain pathophysiological information on the cardiovascular system. OBJECTIVE we investigated whether wrist pulse detection could be used to assess the BNP levels of patients with CHD and accordingly evaluated the potential of wrist pulse signals for use in the real-time cardiac monitoring of patients with CHD. METHODS On the basis of BNP levels, 419 patients with CHD were assigned to Group 1 (BNP < 95 pg/mL, n = 249), 2 (95 < BNP < 221 pg/mL, n = 85), and 3 (BNP > 221 pg/mL, n = 85). Wrist pulse signals were measured noninvasively. Both the time-domain method and multiscale entropy (MSE) method were used to extract pulse features. Decision tree (DT) and random forest (RF) algorithms were employed to construct models for classifying BNP level groups, and the models’ accuracy, precision, recall, and F1-score were compared. RESULTS The pulse (time-domain and MSE) features of the three groups differed significantly, suggesting different pathological states of the cardiovascular system in patients with CHD. Moreover, the RF models outperformed the DT models in accuracy and average precision, recall, and F1-score. Furthermore, the optimal RF model was that based on a dataset comprising both time-domain and MSE features, achieving accuracy, average precision, average recall, and an average F1-score of 90.900%, 91.048%, 90.900%, and 90.897%, respectively. CONCLUSIONS The wrist pulse detection technology employed in the present study is useful for assessing the cardiac function of patients with CHD.
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- 2022
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26. Emergency remote teaching technology and pedagogy at covid outbreak: different perspectives of students, parents, and teachers in Hong kong
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Kit-Tai Hau, Wen Jie Wu, Wing Tung Chung, Sze Ching Chan, and Ming Ho Ng
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Library and Information Sciences ,Education - Abstract
With the COVID-19 outbreak, emergency remote teaching – an unprepared distant mode of education became the only possible alternative for schools. The present large-scale survey with 3,672 Grade 3 and 9 students, their parents, and 863 teachers/principals was conducted in the metropolitan city of Hong Kong after half a year of school lockdown. Results showed teachers, principals, and parents were worried about students’ inability to concentrate and learn without teachers’ explanations. In contrast, students, particularly younger ones, were less affected. They perceived their academic achievement was not worsened and they were more lively. Generally, lack of computers and stable internet was not seen as problems. Notably, socially disadvantaged students were not different in their perceived challenges, affects, life satisfaction, or perceived academic achievement. For cities with adequate provision of computers and internet facilities, the pandemic probably forced a positive and giant leap in using advanced technologies and pedagogies.
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- 2022
27. The Phylotranscriptomic Hourglass Pattern in Fungi: An Updated Model
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Yichun Xie, Hoi Shan Kwan, Po Lam Chan, Wen Jie Wu, Jiachi Chiou, and Jinhui Chang
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The “developmental hourglass” describes the morphological convergence to a conserved form at mid-stages of animal embryogenesis. The molecular hourglass pattern during embryogenesis was also identified across kingdoms. Previously, we reported young fruiting body as the conserved “waist” in mushroom-forming “developmental hourglass”. However, its robustness is doubted because of the fungal diversity. Additionally, fungi lack embryogenesis, and develop directly from spore to hyphae with morphological similarities during the transition. Here, we updated the “developmental hourglass” model in the life cycle of fungi, namely, spore germination, vegetative growth, and sexual reproduction. Germinating spores, both sexual and asexual, showed the strongest transcriptomic conservation signals across the phyla Mucoromycota, Ascomycota and Basidiomycota. Cross kingdom comparisons revealed high expression levels of “information storage and processing” genes at the waist stages of embryonic and non-embryonic developments in animals, plants, and fungi. The “developmental hourglass” might reflect the mutual transcriptome switches on developmental transitions in eukaryotes that are additional to embryonic organogenesis.HighlightsUpdated fungal molecular “developmental hourglass” model in the life cycle of fungiGerminating spores are the evolutionarily conserved “waist” across fungal phylaHigh expression levels of “information storage and processing” genes at the waist stages in the embryonic and non-embryonic hourglasses across kingdoms“Developmental hourglass” may reflect the mutual transcriptome switches on developmental transitions in eukaryotes
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- 2022
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28. Image fusion technique for target volume delineation in
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Zhen-Yu, Li, Zhi-Yuan, Wu, Wen-Jie, Wu, Yan, Shi, Xing-Hong, Zhou, and Jie, Zhang
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Iodine Radioisotopes ,Neoplasms ,Radiotherapy Planning, Computer-Assisted ,Brachytherapy ,Humans ,Parotid Gland - Abstract
Variability in volume delineation is a possible error source in brachytherapy. This study assessed the interobserver variations in clinical target volume (CTV) delineation in postoperative adjuvantFive radiation oncologists delineated gross tumor volume (GTV) and CTV in 20 patients using conventional delineation and image fusion methods. The consistency in target volume delineation was determined on the basis of differences between the oncologists. Variability was determined using Kendall's W-test, the mean conformity index (CI), the mean distance to conformity (MDC), and the center of gravity distance (CGD).There were significant variations in the delineated target volumes among radiation oncologists, but the CTV consistency was significantly enhanced using the image fusion technique, based on Kendall's W, mean CI, average MDC, and average CGD, which were 0.752, 0.41, 2.75, and 4.997, respectively, using the conventional method, and 0.987, 0.86, 0.55, and 1.27, respectively, using the image fusion method.The interobserver variation in the delineation of the postoperative parotid target volume is large, but it can be considerably decreased using image fusion technology, which resulted in a noticeable improvement in the delineation precision of the target volume for parotid gland cancer. Thus, this technology can enhance the efficacy of
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- 2022
29. Comparative genomic analysis of the genus Marinomonas and taxonomic study of Marinomonas algarum sp. nov., isolated from red algae Gelidium amansii
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Jian-Heng Xue, Bei-Ning Zhang, Feng Zhang, Ying-Ying Liu, Wen-Jie Wu, Zhao-Ming Wu, Yue Si, Peng-Xi Yang, Xiang Xing, and Li-Hua Zhao
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DNA, Bacterial ,Ubiquinone ,Fatty Acids ,General Medicine ,Genomics ,Sequence Analysis, DNA ,Biochemistry ,Microbiology ,Bacterial Typing Techniques ,RNA, Ribosomal, 16S ,Rhodophyta ,Genetics ,Molecular Biology ,Marinomonas ,Phospholipids ,Phylogeny - Abstract
Members of the genus Marinomonas are known for their environmental adaptation and metabolically versatility, with abundant proteins associated with antifreeze, osmotic pressure resistance, carbohydrase and multiple secondary metabolites. Comparative genomic analysis focusing on secondary metabolites and orthologue proteins were conducted with 30 reference genome sequences in genus Marinomonas. In this study, a Gram-stain-negative, rod-shaped, non-flagellated and strictly aerobic bacterium, designated as strain E8T, was isolated from the red algae (Gelidium amansii) in the coastal of Weihai, China. Optimal growth of the strain E8T was observed at temperatures 25–30 ℃, pH 6.5-8.0 and 1–3% (w/v) NaCl. The DNA G + C content was 42.8 mol%. The predominant quinone was Q-8 and the major fatty acids were C16:0, summed feature 3 and summed feature 8. The main polar lipids were phosphatidylglycerol (PG) and phosphatidylethanolamine (PE). Based on data obtained from this polyphasic taxonomic study, strain E8T belongs to a novel species of the genus Marinomonas, for which the name Marinomonas algarum is proposed. The type strain is E8T (= KCTC 92201T = MCCC 1K07070T).
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- 2022
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30. Oceanisphaera pacifica sp. nov., isolated from the intestine of Trichiurus japonicus
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Jian-Heng Xue, Li-Fang Shi, Bei-Ning Zhang, Wen-Jie Wu, Yuan Gao, Qian Zhu, and Li-Hua Zhao
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DNA, Bacterial ,Ubiquinone ,Fatty Acids ,General Medicine ,Sequence Analysis, DNA ,Biochemistry ,Microbiology ,Bacterial Typing Techniques ,Perciformes ,Intestines ,RNA, Ribosomal, 16S ,Genetics ,Animals ,Seawater ,Molecular Biology ,Phospholipids ,Phylogeny - Abstract
A Gram-stain-negative, strictly aerobic, non-flagellated, oxidase- and catalase-positive, rod-shaped marine bacterium, designated strain DM8T, was isolated from the intestine of Trichiurus japonicus in Weihai, China. The strain optimally grew at 25-35℃, with 1.0-4.0% (w/v) NaCl and at pH 7.0-8.0. Its colonies were circular, slightly yellow, non-transparent, smooth, and approximately 0.8-1.5 mm in diameter, after being cultured for 48h on marine agar 2216. Based on the result of phylogenetic analysis of 16S rRNA gene sequence, strain DM8T had close relationship with Oceanisphaera profunda SM1222T (96.9%) and the similarity between DM8T and the type strain Oceanisphaera litoralis DSM 15406T was 94.7%. Genome sequencing revealed a genome size of 3,109,059 bp and a G+C content of 46.9 mol%. It had Q-8 as the sole respiratory quinone and possessed C16:0, summed features 3 (C16:1ω7c/C16:1ω6c) and summed features 8 (C18:1ω7c/C18:1ω6c) as major fatty acids. The major polar lipid profile was composed of phosphatidylglycerol and phosphatidylethanolamine. Based on the phenotypic, chemotaxonomic characterisations, phylogenetic properties and genome analysis, strain DM8T should represent a novel species of the genus Oceanisphaera, for which the name Oceanisphaera pacifica sp. nov. is proposed. The type strain is DM8T (=KCTC 82764T =MCCC 1K06133T).
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- 2022
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31. Inactivation of vegetative cells, germinated spores, and dormant spores of <scp> Bacillus atrophaeus </scp> by pulsed electric field with fixed energy input
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Wen Jie Wu and Jinhui Chang
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General Chemical Engineering ,Food Science - Published
- 2022
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32. Evaluation Method for Heavy-Duty Gas Turbine Overspeed Analysis
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Wen-Jie Wu, null Hua-Zhang, and He-Ming Bao
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- 2022
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33. Oligosaccharide analysis of the backbone structure of the characteristic polysaccharide of Dendrobium officinale
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Tin-Long Wong, Li-Feng Li, Ji-Xia Zhang, Quan-Wei Zhang, Xue-Ting Zhang, Li-Shuang Zhou, Hau-Yee Fung, Lei Feng, Hui-Yuan Cheng, Chu-Ying Huo, Man Liu, Wan-Rong Bao, Wen-Jie Wu, Cheuk-Hei Lai, Su-Ping Bai, Shao-Ping Nie, Pema-Tenzin Puno, Clara Bik-San Lau, Ping-Chung Leung, Quan-Bin Han, and Han-Dong Sun
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General Chemical Engineering ,General Chemistry ,Food Science - Published
- 2023
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34. Qualitative and quantitative analysis of agar in edible bird's nest and related products based on a daughter oligosaccharide-marker approach using LC-QTOF-MS
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Hau-Yee Kong, Wan-Rong Bao, Man Liu, Quan-Bin Han, Chu-Ying Huo, Wen-Jie Wu, Li-Feng Li, Cheuk-Hei Lai, Hongming Zheng, Jun Xu, Yan Zhou, Hui-Yuan Cheng, Quan-Wei Zhang, Tin-Long Wong, and Qiu-Ke Hou
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chemistry.chemical_classification ,Adulterant ,food.ingredient ,Chromatography ,Starch ,Repeatability ,Oligosaccharide ,Raw material ,chemistry.chemical_compound ,food ,chemistry ,Agar ,Acid hydrolysis ,Quantitative analysis (chemistry) ,Food Science ,Biotechnology - Abstract
Agar is a common adulterant of edible bird's nest (EBN) and is often added in preparation of EBN products. Currently, there is no method that can be used to assess agar content in products because it is difficult to analyze a macromolecule that does not absorb UV. Herein, we report an efficient qualitative and quantitative method for detecting agar in food products based on a daughter oligosaccharide-marker approach. There are three steps: 1) acid hydrolysis of parent agar to release daughter oligosaccharides, 2) p-aminobenzoic ethyl ester (ABEE) labeling, 3) Liquid Chromatography Quadrupole Time-of-Flight Mass Spectrometry (LC-QTOF-MS) analysis. Twenty-four daughter oligosaccharides found to be specific to agar were selected as qualitative authentication markers. One of them, which showed high signal abundance and satisfactory linearity with standard agar, was selected as the assay marker; and it was identified as neoagarotetraose by comparing with standard references. Based on this marker, a qualitative and quantitative analytical method was successfully developed and well-validated in terms of linearity, precision, repeatability, and accuracy. This method revealed that agar is being used as a minor adulterant (one out of 12) in EBN raw material. In this study, 60% of commercial “agar” was, in fact, starch and a significant number of EBN products labeled as having agar either did not contain agar or did not contain the amount listed on the label. It is proved that this oligomer approach can be used to improve quality control of all commercial products labeled as or containing agar. Furthermore, this oligomer approach is efficient and reliable in the quality analysis of other polymers like agar.
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- 2022
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35. Image fusion technique for target volume delineation in 125I seed implant brachytherapy for parotid gland cancers
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Jie Zhang, Zhen-Yu Li, Zhi-Yuan Wu, Wen-Jie Wu, Yan Shi, and Xing-Hong Zhou
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Oncology ,Radiology, Nuclear Medicine and imaging ,General Medicine - Published
- 2022
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36. Pulsed Electric Field Treatments with Nonlethal Field Strength Alter the Properties of Bacterial Spores.
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XING QIU, JINHUI CHANG, YONG JIN, and WEN JIE WU
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Pulsed electric field (PEF) treatment, an alternative to thermal processing in the food industry, is insufficient to inactivate bacterial spores. Although spores that have been treated in this manner remain alive, specific understanding of their physiological properties is limited. The purpose of this study is to describe the morphology, viability, and germination behavior of Bacillus atrophaeus spores treated with PEF. Our findings indicate that nonlethal PEF treatment results in spore deformation, dipicolinic acid (DPA) leakage, and a shorter and more uniform germination lag time (T
lag ), but that there is no change in release duration (ΔTrelease ), germination ratio, or viability. Based on our findings, we conclude that an intact morphologic state and DPA content are not prerequisites for germination and full viability and that, in contrast to nutrient-induced germination in which initially slowly released DPA triggers subsequent germination events, leaked DPA during PEF treatment does not. Spores that have been subjected to this procedure remain dormant and preserve their full germinability. We found that PEF-treated spores respond to germinants more quickly and with less heterogeneity, possibly because the tiny cracks formed on the spore surface facilitate the germinants’ access to the germination receptors situated on the spore’s inner membrane. The consensus view that nonlethal PEF has less impact on spores that are still capable of forming CFUs under proper conditions is one-sided. This research advances our understanding of how spores behave following nonlethal PEF treatment and gives information on the topics of nosocomial sterilization, food safety, and public health. [ABSTRACT FROM AUTHOR]- Published
- 2022
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