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3 results on '"Walczysko Petr"'

1. OME-Zarr: a cloud-optimized bioimaging file format with international community support

Author

Moore, Josh, Basurto-Lozada, Daniela, Besson, Sébastien, Bogovic, John, Bragantini, Jordão, Brown, Eva M., Burel, Jean-Marie, Casas Moreno, Xavier, de Medeiros, Gustavo, Diel, Erin E., Gault, David, Ghosh, Satrajit S., Gold, Ilan, Halchenko, Yaroslav O., Hartley, Matthew, Horsfall, Dave, Keller, Mark S., Kittisopikul, Mark, Kovacs, Gabor, Küpcü Yoldaş, Aybüke, Kyoda, Koji, le Tournoulx de la Villegeorges, Albane, Li, Tong, Liberali, Prisca, Lindner, Dominik, Linkert, Melissa, Lüthi, Joel, Maitin-Shepard, Jeremy, Manz, Trevor, Marconato, Luca, McCormick, Matthew, Lange, Merlin, Mohamed, Khaled, Moore, William, Norlin, Nils, Ouyang, Wei, Özdemir, Bugra, Palla, Giovanni, Pape, Constantin, Pelkmans, Lucas, Pietzsch, Tobias, Preibisch, Stephan, Prete, Martin, Rzepka, Norman, Samee, Sameeul, Schaub, Nicholas, Sidky, Hythem, Solak, Ahmet Can, Stirling, David R., Striebel, Jonathan, Tischer, Christian, Toloudis, Daniel, Virshup, Isaac, Walczysko, Petr, Watson, Alan M., Weisbart, Erin, Wong, Frances, Yamauchi, Kevin A., Bayraktar, Omer, Cimini, Beth A., Gehlenborg, Nils, Haniffa, Muzlifah, Hotaling, Nathan, Onami, Shuichi, Royer, Loic A., Saalfeld, Stephan, Stegle, Oliver, Theis, Fabian J., and Swedlow, Jason R.

Published
2023
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2. OME-Zarr: a cloud-optimized bioimaging file format with international community support

Author

Moore, Josh, primary, Basurto-Lozada, Daniela, additional, Besson, Sébastien, additional, Bogovic, John, additional, Bragantini, Jordão, additional, Brown, Eva M., additional, Burel, Jean-Marie, additional, Casas Moreno, Xavier, additional, de Medeiros, Gustavo, additional, Diel, Erin E., additional, Gault, David, additional, Ghosh, Satrajit S., additional, Gold, Ilan, additional, Halchenko, Yaroslav O., additional, Hartley, Matthew, additional, Horsfall, Dave, additional, Keller, Mark S., additional, Kittisopikul, Mark, additional, Kovacs, Gabor, additional, Küpcü Yoldaş, Aybüke, additional, Kyoda, Koji, additional, le Tournoulx de la Villegeorges, Albane, additional, Li, Tong, additional, Liberali, Prisca, additional, Lindner, Dominik, additional, Linkert, Melissa, additional, Lüthi, Joel, additional, Maitin-Shepard, Jeremy, additional, Manz, Trevor, additional, Marconato, Luca, additional, McCormick, Matthew, additional, Lange, Merlin, additional, Mohamed, Khaled, additional, Moore, William, additional, Norlin, Nils, additional, Ouyang, Wei, additional, Özdemir, Bugra, additional, Palla, Giovanni, additional, Pape, Constantin, additional, Pelkmans, Lucas, additional, Pietzsch, Tobias, additional, Preibisch, Stephan, additional, Prete, Martin, additional, Rzepka, Norman, additional, Samee, Sameeul, additional, Schaub, Nicholas, additional, Sidky, Hythem, additional, Solak, Ahmet Can, additional, Stirling, David R., additional, Striebel, Jonathan, additional, Tischer, Christian, additional, Toloudis, Daniel, additional, Virshup, Isaac, additional, Walczysko, Petr, additional, Watson, Alan M., additional, Weisbart, Erin, additional, Wong, Frances, additional, Yamauchi, Kevin A., additional, Bayraktar, Omer, additional, Cimini, Beth A., additional, Gehlenborg, Nils, additional, Haniffa, Muzlifah, additional, Hotaling, Nathan, additional, Onami, Shuichi, additional, Royer, Loic A., additional, Saalfeld, Stephan, additional, Stegle, Oliver, additional, Theis, Fabian J., additional, and Swedlow, Jason R., additional

Published
2023
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3. OME-Zarr: a cloud-optimized bioimaging file format with international community support.

Author

Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Moreno XC, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Yoldaş AK, Kyoda K, de la Villegeorges ALT, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, and Swedlow JR

Abstract

A growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity. Organized by the Open Microscopy Environment (OME), individuals and institutes across diverse modalities facing these problems have designed a format specification process (OME-NGFF) to address these needs. This paper brings together a wide range of those community members to describe the cloud-optimized format itself -- OME-Zarr -- along with tools and data resources available today to increase FAIR access and remove barriers in the scientific process. The current momentum offers an opportunity to unify a key component of the bioimaging domain -- the file format that underlies so many personal, institutional, and global data management and analysis tasks.

Published
2023
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