131 results on '"Thierry, B."'
Search Results
2. A pragmatic approach for integrating molecular tools into biodiversity conservation
- Author
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Laura D. Bertola, Anna Brüniche‐Olsen, Francine Kershaw, Isa‐Rita M. Russo, Anna J. MacDonald, Paul Sunnucks, Michael W. Bruford, Carlos Daniel Cadena, Kyle M. Ewart, Mark deBruyn, Mark D. B. Eldridge, Richard Frankham, Juan M. Guayasamin, Catherine E. Grueber, Thierry B. Hoareau, Sean Hoban, Paul A. Hohenlohe, Margaret E. Hunter, Antoinette Kotze, Josiah Kuja, Robert C. Lacy, Linda Laikre, Nathan Lo, Mariah H. Meek, Joachim Mergeay, Cinnamon Mittan‐Moreau, Linda E. Neaves, David O'Brien, Joel W. Ochieng, Rob Ogden, Pablo Orozco‐terWengel, Mónica Páez‐Vacas, Jennifer Pierson, Katherine Ralls, Robyn E. Shaw, Etotépé A. Sogbohossou, Adam Stow, Tammy Steeves, Cristiano Vernesi, Mrinalini Watsa, and Gernot Segelbacher
- Subjects
conservation ,management ,molecular tools ,Ecology ,QH540-549.5 ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Abstract Molecular tools are increasingly applied for assessing and monitoring biodiversity and informing conservation action. While recent developments in genetic and genomic methods provide greater sensitivity in analysis and the capacity to address new questions, they are not equally available to all practitioners: There is considerable bias across institutions and countries in access to technologies, funding, and training. Consequently, in many cases, more accessible traditional genetic data (e.g., microsatellites) are still utilized for making conservation decisions. Conservation approaches need to be pragmatic by tackling clearly defined management questions and using the most appropriate methods available, while maximizing the use of limited resources. Here we present some key questions to consider when applying the molecular toolbox for accessible and actionable conservation management. Finally, we highlight a number of important steps to be addressed in a collaborative way, which can facilitate the broad integration of molecular data into conservation.
- Published
- 2024
- Full Text
- View/download PDF
3. Does the built environment influence location- and trip-based sedentary behaviors? Evidence from a GPS-based activity space approach of neighborhood effects on older adults
- Author
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Perchoux, C., Brondeel, R., Klein, S., Klein, O., Thierry, B., Kestens, Y., Chaix, B., and Gerber, P.
- Published
- 2023
- Full Text
- View/download PDF
4. DNA methylation episignature and comparative epigenomic profiling of HNRNPU-related neurodevelopmental disorder
- Author
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Rooney, Kathleen, van der Laan, Liselot, Trajkova, Slavica, Haghshenas, Sadegheh, Relator, Raissa, Lauffer, Peter, Vos, Niels, Levy, Michael A., Brunetti-Pierri, Nicola, Terrone, Gaetano, Mignot, Cyril, Keren, Boris, de Villemeur, Thierry B., Volker-Touw, Catharina M.L., Verbeek, Nienke, van der Smagt, Jasper J., Oegema, Renske, Brusco, Alfredo, Ferrero, Giovanni B., Misra-Isrie, Mala, Hochstenbach, Ron, Alders, Mariëlle, Mannens, Marcel M.A.M., Sadikovic, Bekim, van Haelst, Mieke M., and Henneman, Peter
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- 2023
- Full Text
- View/download PDF
5. Embriología de las vías aéreas superiores
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Fayoux, P., Devisme, L., Maltezeanu, A., and Thierry, B.
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- 2023
- Full Text
- View/download PDF
6. Does work-related and commuting physical activity predict changes in physical activity and sedentary behavior during the transition to retirement? GPS and accelerometer study
- Author
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Pasanen, S., Halonen, J.I., Suorsa, K., Leskinen, T., Kestens, Y., Thierry, B., Pentti, J., Vahtera, J., and Stenholm, S.
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- 2023
- Full Text
- View/download PDF
7. Cuerpos extraños de las vías aéreas y digestivas en el niño
- Author
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Luscan, R., Leboulanger, N., and Thierry, B.
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- 2022
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- View/download PDF
8. Corpi estranei delle vie aeree e digestive nel bambino
- Author
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Luscan, R., Leboulanger, N., and Thierry, B.
- Published
- 2022
- Full Text
- View/download PDF
9. Stenosi laringotracheali nei bambini: trattamento chirurgico tramite accesso esterno
- Author
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Maltezeanu, A., Fayoux, P., and Thierry, B.
- Published
- 2022
- Full Text
- View/download PDF
10. Estenosis laringotraqueales infantiles: tratamientos quirúrgicos por vía externa
- Author
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Maltezeanu, A., Fayoux, P., and Thierry, B.
- Published
- 2022
- Full Text
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11. Changes in physical activity by context and residential greenness among recent retirees: Longitudinal GPS and accelerometer study
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Pasanen, S., Halonen, J.I., Gonzales-Inca, C., Pentti, J., Vahtera, J., Kestens, Y., Thierry, B., Brondeel, R., Leskinen, T., and Stenholm, S.
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- 2022
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- View/download PDF
12. Corners and stable optimized domain decomposition methods for the Helmholtz problem
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Després, B., Nicolopoulos, A., and Thierry, B.
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- 2021
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13. CO7.2 - Validation de l'EMoWI (« Ecological Momentary Wellbeing Instrument ») pour l’évaluation longitudinale intensive du bien-être instantané
- Author
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Buzzi, M., primary, Moullec, G., additional, Kestens, Y., additional, Minary, L., additional, O'Loughlin, J., additional, Thierry, B., additional, Lalloué, B., additional, Agrinier, N., additional, and Epstein, J., additional
- Published
- 2024
- Full Text
- View/download PDF
14. Corridors and barriers to marine connectivity around southern Africa
- Author
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Lett, Christophe, Malauene, Bernardino S., Hoareau, Thierry B., Kaplan, David M., Porri, Francesca, Lett, Christophe, Malauene, Bernardino S., Hoareau, Thierry B., Kaplan, David M., and Porri, Francesca
- Abstract
Detailed knowledge on connectivity, i.e. the exchange of marine organisms among geographically separated populations, is essential for effective marine spatial planning strategies and the design of marine protected areas (MPAs) in coastal ecosystems. Coastal waters around southern Africa are characterized by complex oceanographic processes that strongly influence connectivity, challenging the design and management of marine ecosystems. Here we reviewed connectivity studies conducted across 25° of latitude on both the southeastern and southwestern sides of Africa based on biophysical modelling, ecological and molecular approaches, and identified 7 corridors and 8 barriers recognized to influence marine connectivity for a variety of vertebrate and invertebrate taxa of commercial and ecological interest. These corridors and barriers were generally consistent across studies, species and methodological approaches, and were reflected in marine bioregion breaks. Nevertheless, life history traits appear to be important to understanding why some corridors and barriers may be notable for some species and life stages and not for others. Our review underlines the value of including studies from different disciplines in order to have a broad view of marine connectivity, and, in particular, the complementarity of larval-dispersal biophysical models and seascape genetics is emphasized. The corridors and barriers to connectivity identified in this review represent baselines to critically assess existing MPAs and prioritize new spatial management efforts to mitigate human impacts on marine ecosystems.
- Published
- 2024
- Full Text
- View/download PDF
15. A pragmatic approach for integrating molecular tools into biodiversity conservation
- Author
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Bertola, Laura D., Brüniche-Olsen, Anna, Kershaw, Francine, Russo, Isa Rita M., MacDonald, Anna J., Sunnucks, Paul, Bruford, Michael W., Cadena, Carlos Daniel, Ewart, Kyle M., de Bruyn, Mark, Eldridge, Mark D.B., Frankham, Richard, Guayasamin, Juan M., Grueber, Catherine E., Hoareau, Thierry B., Hoban, Sean, Hohenlohe, Paul A., Hunter, Margaret E., Kotze, Antoinette, Kuja, Josiah, Lacy, Robert C., Laikre, Linda, Lo, Nathan, Meek, Mariah H., Mergeay, Joachim, Mittan-Moreau, Cinnamon, Neaves, Linda E., O'Brien, David, Ochieng, Joel W., Ogden, Rob, Orozco-terWengel, Pablo, Páez-Vacas, Mónica, Pierson, Jennifer, Ralls, Katherine, Shaw, Robyn E., Sogbohossou, Etotépé A., Stow, Adam, Steeves, Tammy, Vernesi, Cristiano, Watsa, Mrinalini, Segelbacher, Gernot, Bertola, Laura D., Brüniche-Olsen, Anna, Kershaw, Francine, Russo, Isa Rita M., MacDonald, Anna J., Sunnucks, Paul, Bruford, Michael W., Cadena, Carlos Daniel, Ewart, Kyle M., de Bruyn, Mark, Eldridge, Mark D.B., Frankham, Richard, Guayasamin, Juan M., Grueber, Catherine E., Hoareau, Thierry B., Hoban, Sean, Hohenlohe, Paul A., Hunter, Margaret E., Kotze, Antoinette, Kuja, Josiah, Lacy, Robert C., Laikre, Linda, Lo, Nathan, Meek, Mariah H., Mergeay, Joachim, Mittan-Moreau, Cinnamon, Neaves, Linda E., O'Brien, David, Ochieng, Joel W., Ogden, Rob, Orozco-terWengel, Pablo, Páez-Vacas, Mónica, Pierson, Jennifer, Ralls, Katherine, Shaw, Robyn E., Sogbohossou, Etotépé A., Stow, Adam, Steeves, Tammy, Vernesi, Cristiano, Watsa, Mrinalini, and Segelbacher, Gernot
- Abstract
Molecular tools are increasingly applied for assessing and monitoring biodiversity and informing conservation action. While recent developments in genetic and genomic methods provide greater sensitivity in analysis and the capacity to address new questions, they are not equally available to all practitioners: There is considerable bias across institutions and countries in access to technologies, funding, and training. Consequently, in many cases, more accessible traditional genetic data (e.g., microsatellites) are still utilized for making conservation decisions. Conservation approaches need to be pragmatic by tackling clearly defined management questions and using the most appropriate methods available, while maximizing the use of limited resources. Here we present some key questions to consider when applying the molecular toolbox for accessible and actionable conservation management. Finally, we highlight a number of important steps to be addressed in a collaborative way, which can facilitate the broad integration of molecular data into conservation., Molecular tools are increasingly applied for assessing and monitoring biodiversity and informing conservation action. While recent developments in genetic and genomic methods provide greater sensitivity in analysis and the capacity to address new questions, they are not equally available to all practitioners: There is considerable bias across institutions and countries in access to technologies, funding, and training. Consequently, in many cases, more accessible traditional genetic data (e.g., microsatellites) are still utilized for making conservation decisions. Conservation approaches need to be pragmatic by tackling clearly defined management questions and using the most appropriate methods available, while maximizing the use of limited resources. Here we present some key questions to consider when applying the molecular toolbox for accessible and actionable conservation management. Finally, we highlight a number of important steps to be addressed in a collaborative way, which can facilitate the broad integration of molecular data into conservation.
- Published
- 2024
16. Total laryngectomy in children: Madness or method?
- Author
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Thierry, B., primary, Lesnik, M., additional, Luscan, R., additional, and Leboulanger, N., additional
- Published
- 2024
- Full Text
- View/download PDF
17. A pragmatic approach for integrating molecular tools into biodiversity conservation
- Author
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Bertola, Laura D., primary, Brüniche‐Olsen, Anna, additional, Kershaw, Francine, additional, Russo, Isa‐Rita M., additional, MacDonald, Anna J., additional, Sunnucks, Paul, additional, Bruford, Michael W., additional, Cadena, Carlos Daniel, additional, Ewart, Kyle M., additional, de Bruyn, Mark, additional, Eldridge, Mark D. B., additional, Frankham, Richard, additional, Guayasamin, Juan M., additional, Grueber, Catherine E., additional, Hoareau, Thierry B., additional, Hoban, Sean, additional, Hohenlohe, Paul A., additional, Hunter, Margaret E., additional, Kotze, Antoinette, additional, Kuja, Josiah, additional, Lacy, Robert C., additional, Laikre, Linda, additional, Lo, Nathan, additional, Meek, Mariah H., additional, Mergeay, Joachim, additional, Mittan‐Moreau, Cinnamon, additional, Neaves, Linda E., additional, O'Brien, David, additional, Ochieng, Joel W., additional, Ogden, Rob, additional, Orozco‐terWengel, Pablo, additional, Páez‐Vacas, Mónica, additional, Pierson, Jennifer, additional, Ralls, Katherine, additional, Shaw, Robyn E., additional, Sogbohossou, Etotépé A., additional, Stow, Adam, additional, Steeves, Tammy, additional, Vernesi, Cristiano, additional, Watsa, Mrinalini, additional, and Segelbacher, Gernot, additional
- Published
- 2023
- Full Text
- View/download PDF
18. DNA methylation episignature and comparative epigenomic profiling of HNRNPU-related neurodevelopmental disorder
- Author
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Kathleen Rooney, Liselot van der Laan, Slavica Trajkova, Sadegheh Haghshenas, Raissa Relator, Peter Lauffer, Niels Vos, Michael A. Levy, Nicola Brunetti-Pierri, Gaetano Terrone, Cyril Mignot, Boris Keren, Thierry B. de Villemeur, Catharina M.L. Volker-Touw, Nienke Verbeek, Jasper J. van der Smagt, Renske Oegema, Alfredo Brusco, Giovanni B. Ferrero, Mala Misra-Isrie, Ron Hochstenbach, Mariëlle Alders, Marcel M.A.M. Mannens, Bekim Sadikovic, Mieke M. van Haelst, Peter Henneman, Human genetics, Amsterdam Reproduction & Development (AR&D), Amsterdam Neuroscience - Complex Trait Genetics, Rooney, Kathleen, van der Laan, Liselot, Trajkova, Slavica, Haghshenas, Sadegheh, Relator, Raissa, Lauffer, Peter, Vos, Niel, Levy, Michael A, Brunetti-Pierri, Nicola, Terrone, Gaetano, Mignot, Cyril, Keren, Bori, Billette de Villemeur, Thierry, Volker-Touw, Catharina M L, Verbeek, Nienke, van der Smagt, Jasper J, Oegema, Renske, Brusco, Alfredo, Ferrero, Giovanni Battista, Misra-Isrie, Mala, Hochstenbach, Ron, Alders, Mariëlle, Mannens, Marcel M A M, Sadikovic, Bekim, van Haelst, Mieke M, and Henneman, Peter
- Subjects
DNA methylation ,Epilepsy ,HNRNPU ,Neurodevelopmental Disorder ,CNV ,Intellectual disability ,Epigenetic ,Epigenetics ,Episignature ,Genetics (clinical) - Abstract
Purpose: HNRNPU haploinsufficiency is associated with Developmental and Epileptic Encephalopathy 54. This neurodevelopmental disorder is characterized by developmental delay, intellectual disability, speech impairment, and early onset epilepsy. We performed genome-wide DNA methylation (DNAm) analysis in a cohort of individuals to develop a diagnostic biomarker and gain functional insights into the molecular pathophysiology of HNRNPU-related disorder. Methods: DNAm profiles of individuals carrying pathogenic HNRNPU variants, identified through an international multi-center collaboration, were assessed using Infinium Methylation EPIC arrays. Statistical and functional correlation analyses were performed comparing the HNRNPU cohort to 56 previously reported DNAm episignatures. Results: A robust and reproducible DNAm episignature and global DNAm profile were identified. Correlation analysis identified partial overlap and similarity of the global HNRNPU DNAm profile to several other rare disorders. Conclusion: This study demonstrates new evidence of a specific and sensitive DNAm episignature associated with pathogenic heterozygous HNRNPU-variants, establishing its utility as a clinical biomarker for the expansion of the EpiSignTM diagnostic test.
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- 2023
19. Réinventer les facteurs humains aéronautiques en chirurgie cervico-faciale
- Author
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Cadre, B., primary, Dubey, G., additional, Thierry, B., additional, and Simon, F., additional
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- 2023
- Full Text
- View/download PDF
20. Reinventing human factors in aviation for head and neck surgery
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Cadre, B., primary, Dubey, G., additional, Thierry, B., additional, and Simon, F., additional
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- 2023
- Full Text
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21. Physical activity change across retirement by device measured work-related and commuting activity
- Author
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Pasanen, S, primary, Halonen, JI, additional, Suorsa, K, additional, Leskinen, T, additional, Kestens, Y, additional, Thierry, B, additional, Pentti, J, additional, Vahtera, J, additional, and Stenholm, S, additional
- Published
- 2022
- Full Text
- View/download PDF
22. Optimized Transmission Conditions in Domain Decomposition Methods with Cross-Points for Helmholtz Equation
- Author
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Després, B., primary, Nicolopoulos, A., additional, and Thierry, B., additional
- Published
- 2022
- Full Text
- View/download PDF
23. Identifying preeclampsia-associated genes using a control theory method
- Author
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Li, X, Liu, L, Whitehead, C, Li, J, Thierry, B, Le, TD, Winter, M, Li, X, Liu, L, Whitehead, C, Li, J, Thierry, B, Le, TD, and Winter, M
- Abstract
Preeclampsia is a pregnancy-specific disease that can have serious effects on the health of both mothers and their offspring. Predicting which women will develop preeclampsia in early pregnancy with high accuracy will allow for improved management. The clinical symptoms of preeclampsia are well recognized, however, the precise molecular mechanisms leading to the disorder are poorly understood. This is compounded by the heterogeneous nature of preeclampsia onset, timing and severity. Indeed a multitude of poorly defined causes including genetic components implicates etiologic factors, such as immune maladaptation, placental ischemia and increased oxidative stress. Large datasets generated by microarray and next-generation sequencing have enabled the comprehensive study of preeclampsia at the molecular level. However, computational approaches to simultaneously analyze the preeclampsia transcriptomic and network data and identify clinically relevant information are currently limited. In this paper, we proposed a control theory method to identify potential preeclampsia-associated genes based on both transcriptomic and network data. First, we built a preeclampsia gene regulatory network and analyzed its controllability. We then defined two types of critical preeclampsia-associated genes that play important roles in the constructed preeclampsia-specific network. Benchmarking against differential expression, betweenness centrality and hub analysis we demonstrated that the proposed method may offer novel insights compared with other standard approaches. Next, we investigated subtype specific genes for early and late onset preeclampsia. This control theory approach could contribute to a further understanding of the molecular mechanisms contributing to preeclampsia.
- Published
- 2022
24. Potent Stimulation of the Androgen Receptor Instigates a Viral Mimicry Response in Prostate Cancer.
- Author
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Alizadeh-Ghodsi, M, Owen, KL, Townley, SL, Zanker, D, Rollin, SPG, Hanson, AR, Shrestha, R, Toubia, J, Gargett, T, Chernukhin, I, Luu, J, Cowley, KJ, Clark, A, Carroll, JS, Simpson, KJ, Winter, JM, Lawrence, MG, Butler, LM, Risbridger, GP, Thierry, B, Taylor, RA, Hickey, TE, Parker, BS, Tilley, WD, Selth, LA, Alizadeh-Ghodsi, M, Owen, KL, Townley, SL, Zanker, D, Rollin, SPG, Hanson, AR, Shrestha, R, Toubia, J, Gargett, T, Chernukhin, I, Luu, J, Cowley, KJ, Clark, A, Carroll, JS, Simpson, KJ, Winter, JM, Lawrence, MG, Butler, LM, Risbridger, GP, Thierry, B, Taylor, RA, Hickey, TE, Parker, BS, Tilley, WD, and Selth, LA
- Abstract
UNLABELLED: Inhibiting the androgen receptor (AR), a ligand-activated transcription factor, with androgen deprivation therapy is a standard-of-care treatment for metastatic prostate cancer. Paradoxically, activation of AR can also inhibit the growth of prostate cancer in some patients and experimental systems, but the mechanisms underlying this phenomenon are poorly understood. This study exploited a potent synthetic androgen, methyltestosterone (MeT), to investigate AR agonist-induced growth inhibition. MeT strongly inhibited growth of prostate cancer cells expressing AR, but not AR-negative models. Genes and pathways regulated by MeT were highly analogous to those regulated by DHT, although MeT induced a quantitatively greater androgenic response in prostate cancer cells. MeT potently downregulated DNA methyltransferases, leading to global DNA hypomethylation. These epigenomic changes were associated with dysregulation of transposable element expression, including upregulation of endogenous retrovirus (ERV) transcripts after sustained MeT treatment. Increased ERV expression led to accumulation of double-stranded RNA and a "viral mimicry" response characterized by activation of IFN signaling, upregulation of MHC class I molecules, and enhanced recognition of murine prostate cancer cells by CD8+ T cells. Positive associations between AR activity and ERVs/antiviral pathways were evident in patient transcriptomic data, supporting the clinical relevance of our findings. Collectively, our study reveals that the potent androgen MeT can increase the immunogenicity of prostate cancer cells via a viral mimicry response, a finding that has potential implications for the development of strategies to sensitize this cancer type to immunotherapies. SIGNIFICANCE: Our study demonstrates that potent androgen stimulation of prostate cancer cells can elicit a viral mimicry response, resulting in enhanced IFN signaling. This finding may have implications for the development of strateg
- Published
- 2022
25. Inertial Microfluidic Purification of CAR-T-Cell Products.
- Author
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Elsemary, MT, Maritz, MF, Smith, LE, Warkiani, M, Bandara, V, Napoli, S, Barry, SC, Coombs, JT, Thierry, B, Elsemary, MT, Maritz, MF, Smith, LE, Warkiani, M, Bandara, V, Napoli, S, Barry, SC, Coombs, JT, and Thierry, B
- Abstract
Chimeric antigen receptor T (CAR-T) cell therapy is rapidly becoming a frontline cancer therapy. However, the manufacturing process is time-, labor- and cost-intensive, and it suffers from significant bottlenecks. Many CAR-T products fail to reach the viability release criteria set by regulators for commercial cell therapy products. This results in non-recoupable costs for the manufacturer and is detrimental to patients who may not receive their scheduled treatment or receive out-of-specification suboptimal formulation. It is demonstrated here that inertial microfluidics can, within minutes, efficiently deplete nonviable cells from low-viability CAR-T cell products. The percentage of viable cells increases from 40% (SD ± 0.12) to 71% (SD ± 0.09) for untransduced T cells and from 51% (SD ± 0.12) to 71% (SD ± 0.09) for CAR-T cells, which meets the clinical trials' release parameters. In addition, the processing of CAR-T cells formulated in CryStor yields a 91% reduction in the amount of the cryoprotectant dimethyl sulfoxide. Inertial microfluidic processing has no detrimental effects on the proliferation and cytotoxicity of CAR-T cells. Interestingly, ≈50% of T-regulatory and T-suppressor cells are depleted, suggesting the potential for inertial microfluidic processing to tune the phenotypical composition of T-cell products.
- Published
- 2022
26. Zigzag microchannel for rigid inertial separation and enrichment (Z-RISE) of cells and particles.
- Author
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Razavi Bazaz, S, Mihandust, A, Salomon, R, Joushani, HAN, Li, W, A Amiri, H, Mirakhorli, F, Zhand, S, Shrestha, J, Miansari, M, Thierry, B, Jin, D, Ebrahimi Warkiani, M, Razavi Bazaz, S, Mihandust, A, Salomon, R, Joushani, HAN, Li, W, A Amiri, H, Mirakhorli, F, Zhand, S, Shrestha, J, Miansari, M, Thierry, B, Jin, D, and Ebrahimi Warkiani, M
- Abstract
Separation and enrichment of target cells prior to downstream analyses is an essential pre-treatment step in many biomedical and clinical assays. Separation techniques utilizing simple, cost-effective, and user-friendly devices are highly desirable, both in the lab and at the point of need. Passive microfluidic approaches, especially inertial microfluidics, fit this brief perfectly and are highly desired. Using an optimized additive manufacturing technique, we developed a zigzag microchannel for rigid inertial separation and enrichment, hereafter referred to as Z-RISE. We empirically showed that the Z-RISE device outperforms equivalent devices based on curvilinear (sinusoidal), asymmetric curvilinear, zigzag with round corners, or square-wave formats and modelled this behavior to gain a better understanding of the physics underpinning the improved focusing and separation performance. The comparison between rigid and soft zigzag microchannels reveals that channel rigidity significantly affects and enhances the focusing performance of the microchannel. Compared to other serpentine microchannels, zigzag microfluidics demonstrates superior separation and purity efficiency due to the sudden channel cross-section expansion at the corners. Within Z-RISE, particles are aligned in either double-side or single-line focusing positions. The transition of particles from a double-focusing line to a single focusing line introduced a new phenomenon referred to as the plus focusing position. We experimentally demonstrated that Z-RISE could enrich leukocytes and their subtypes from diluted and RBC lysed blood while depleting dead cells, debris, and RBCs. Z-RISE was also shown to yield outstanding particle or cell concentration with a concentration efficiency of more than 99.99%. Our data support the great potential of Z-RISE for applications that involve particle and cell manipulations and pave the way for commercialization perspective in the near future.
- Published
- 2022
27. Detection of a single circulating tumor cell using a genetically engineered antibody-like phage nanofiber probe
- Author
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Hou, J., Shen, J., Zhao, N., Yang, C.-T., Thierry, B., Zhou, X., Zhu, J., and Mao, C.
- Published
- 2021
- Full Text
- View/download PDF
28. Inertial Microfluidic Purification of CAR-T-Cell Products
- Author
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Elsemary, MT, Maritz, MF, Smith, LE, Warkiani, M, Bandara, V, Napoli, S, Barry, SC, Coombs, JT, and Thierry, B
- Subjects
Receptors, Chimeric Antigen ,Microfluidics ,Cell- and Tissue-Based Therapy ,Humans ,Lymphocyte Count ,Immunotherapy, Adoptive - Abstract
Chimeric antigen receptor T (CAR-T) cell therapy is rapidly becoming a frontline cancer therapy. However, the manufacturing process is time-, labor- and cost-intensive, and it suffers from significant bottlenecks. Many CAR-T products fail to reach the viability release criteria set by regulators for commercial cell therapy products. This results in non-recoupable costs for the manufacturer and is detrimental to patients who may not receive their scheduled treatment or receive out-of-specification suboptimal formulation. It is demonstrated here that inertial microfluidics can, within minutes, efficiently deplete nonviable cells from low-viability CAR-T cell products. The percentage of viable cells increases from 40% (SD ± 0.12) to 71% (SD ± 0.09) for untransduced T cells and from 51% (SD ± 0.12) to 71% (SD ± 0.09) for CAR-T cells, which meets the clinical trials' release parameters. In addition, the processing of CAR-T cells formulated in CryStor yields a 91% reduction in the amount of the cryoprotectant dimethyl sulfoxide. Inertial microfluidic processing has no detrimental effects on the proliferation and cytotoxicity of CAR-T cells. Interestingly, ≈50% of T-regulatory and T-suppressor cells are depleted, suggesting the potential for inertial microfluidic processing to tune the phenotypical composition of T-cell products.
- Published
- 2021
29. Le Carnet Auxiliaire : un aperçu de l’activité opératoire d’un département d’otorhinolaryngologie pédiatrique à Paris dans les années 1920
- Author
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Leboulanger, N., Celerier, C., Parodi, M., Denoyelle, F., and Thierry, B.
- Abstract
Retrouvé dans des archives, un cahier rassemblait 352 comptes rendus opératoires du département d’otorhinolaryngologie de l’hôpital d’enfants Armand-Trousseau à Paris, datés de janvier 1912 à août 1920. Ces documents ont fourni une image de ce que pouvait être l’activité chirurgicale dans ce domaine et à cette époque. Les mastoïdectomies pour mastoïdites étaient de loin les interventions les plus pratiquées. Cette image, incomplète mais originale, témoigne des habitudes et des conditions de travail de nos prédécesseurs ainsi que des progrès accomplis en un peu plus d’un siècle.
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- 2024
- Full Text
- View/download PDF
30. La laryngectomie totale chez l’enfant : folie ou possibilité ?
- Author
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Thierry, B., Lesnik, M., Luscan, R., and Leboulanger, N.
- Published
- 2023
- Full Text
- View/download PDF
31. Detection of a single circulating tumor cell using a genetically engineered antibody-like phage nanofiber probe
- Author
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Benjamin Thierry, J. Hou, J. Shen, N. Zhao, Chuanbin Mao, J. Zhu, C.-T. Yang, X. Zhou, Hou, J, Shen, J, Zhao, N, Yang, C T, Thierry, B, Zhou, X, Zhu, J, and Mao, C
- Subjects
viruses ,single chain variable region fragment (scFv) ,Immunofluorescence ,law.invention ,Circulating tumor cell ,Carcinoembryonic antigen ,Antigen ,law ,Carcinoembryonic antigen (CEA) ,medicine ,General Materials Science ,carcinoembryonic antigen (CEA) ,M13 phage ,neoplasms ,Materials of engineering and construction. Mechanics of materials ,medicine.diagnostic_test ,biology ,Chemistry ,Mechanical Engineering ,Single chain variable region fragment (scFv) ,Molecular biology ,digestive system diseases ,Real-time polymerase chain reaction ,Monoclonal ,biology.protein ,Recombinant DNA ,TA401-492 ,Circulating tumor cell (CTC) ,circulating tumor cell (CTC) ,Antibody - Abstract
Detection of circulating tumor cells (CTCs), at the single-cell level, can be of great value for subsequent treatment of tumors but remains a significant challenge. Herein, we report a phage-based detection strategy for the identification of single CTC. The key assay component is the flexible recombinant M13@anti-CEA-scFv probe (M13, CEA, and scFv stand for M13 phage, carcinoembryonic antigen, and single-chain variable region fragment, respectively), which has a high, monoclonal antibody-like binding affinity for tumor cell-expressed CEA antigen, as confirmed by enzyme-linked immunosorbent assay (ELISA). Cell immunofluorescence experiments by confocal microscopy also demonstrate that the M13@anti-CEA-scFv could specifically bind to CEA-positive colon cancer cells such as Caco-2 and HT29, instead of CEA-negative HEK293T cells even when in great excess. Quantitative polymerase chain reaction (qPCR) further proves the ability to pin down single Caco-2 cell in 1 mL of spiked samples by 1,000 copies of M13@anti-CEA-scFv probe, after merely 15 min incubation. Another probe, the rigid magnetic microparticle (MMP), loaded with anti-CEA antibody, is used for the initial screening of the single CTC, which is mixed with numerous lymphocytes. The CEA on the resultant MMPs/CTC complex is subsequently recognized by numerous copies of M13@anti-CEA-scFv to form an MMP/CTC/M13@anti-CEA-scFv sandwich complex. Probing the phage DNA in this complex by qPCR leads to the unambiguous identification of the single Caco-2 cell in 1 mL of spiked blood samples. The phage-based detection strategy holds promise for the single-cell detection of any CTCs since the scFv displayed at the end of phage can be customized to the unique antigen of a specific CTC. Refereed/Peer-reviewed
- Published
- 2021
32. The Auxiliary Report Book: A glimpse of surgical activity in a pediatric ENT department in Paris in the 1920s.
- Author
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Leboulanger N, Celerier C, Parodi M, Denoyelle F, and Thierry B
- Abstract
A report book unearthed in our archives contained 352 operative reports from the otorhinolaryngology department of the Armand-Trousseau Children's Hospital in Paris, dated from January 1912 to August 1920. These documents provide a snapshot of surgical activity in this field at the time. Mastoidectomy for mastoiditis was by far the most common procedure. This incomplete but original snapshot bears witness to the habits and working conditions of our predecessors, as well as to the progress made in just over a century., (Copyright © 2024. Published by Elsevier Masson SAS.)
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- 2024
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33. Truncated M13 phage for smart detection of E. coli under dark field.
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Yuan J, Zhu H, Li S, Thierry B, Yang CT, Zhang C, and Zhou X
- Subjects
- Microscopy methods, Neural Networks, Computer, Humans, Food Microbiology methods, Plasmids genetics, Bacteriophage M13 chemistry, Bacteriophage M13 genetics, Escherichia coli virology, Escherichia coli genetics
- Abstract
Background: The urgent need for affordable and rapid detection methodologies for foodborne pathogens, particularly Escherichia coli (E. coli), highlights the importance of developing efficient and widely accessible diagnostic systems. Dark field microscopy, although effective, requires specific isolation of the target bacteria which can be hindered by the high cost of producing specialized antibodies. Alternatively, M13 bacteriophage, which naturally targets E. coli, offers a cost-efficient option with well-established techniques for its display and modification. Nevertheless, its filamentous structure with a large length-diameter ratio contributes to nonspecific binding and low separation efficiency, posing significant challenges. Consequently, refining M13 phage methodologies and their integration with advanced microscopy techniques stands as a critical pathway to improve detection specificity and efficiency in food safety diagnostics., Methods: We employed a dual-plasmid strategy to generate a truncated M13 phage (tM13). This engineered tM13 incorporates two key genetic modifications: a partial mutation at the N-terminus of pIII and biotinylation at the hydrophobic end of pVIII. These alterations enable efficient attachment of tM13 to diverse E. coli strains, facilitating rapid magnetic separation. For detection, we additionally implemented a convolutional neural network (CNN)-based algorithm for precise identification and quantification of bacterial cells using dark field microscopy., Results: The results obtained from spike-in and clinical sample analyses demonstrated the accuracy, high sensitivity (with a detection limit of 10 CFU/μL), and time-saving nature (30 min) of our tM13-based immunomagnetic enrichment approach combined with AI-enabled analytics, thereby supporting its potential to facilitate the identification of diverse E. coli strains in complex samples., Conclusion: The study established a rapid and accurate detection strategy for E. coli utilizing truncated M13 phages as capture probes, along with a dark field microscopy detection platform that integrates an image processing model and convolutional neural network., (© 2024. The Author(s).)
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- 2024
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34. Household and housing determinants of sleep duration during the COVID-19 pandemic: Results from the COHESION Study.
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Gabet S, Levasseur A, Thierry B, Wasfi R, Kestens Y, Moullec G, and Simonelli G
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- Humans, Female, Male, Middle Aged, Adult, Time Factors, Canada epidemiology, Aged, Prospective Studies, Pandemics, Sleep Duration, COVID-19 epidemiology, Sleep, Housing statistics & numerical data, Family Characteristics
- Abstract
Background: Public health measures in response to the COVID-19 pandemic forced individuals to spend more time at home. We sought to investigate the relationship between housing characteristics and sleep duration in the context of COVID-19., Methods: Our exploratory study was part of the COvid-19: Health and Social Inequities across Neighborhoods (COHESION) Study Phase-1, a pan-Canadian population-based cohort involving nearly 1300 participants, launched in May 2020. Sociodemographic, household and housing characteristics (dwelling type, dissatisfaction, access to outdoor space, family composition, etc.), and self-reported sleep were prospectively collected through COHESION Study follow-ups. We explored the associations between housing and household characteristics and sleep duration using linear regressions, as well as testing for effect modification by income satisfaction and gender., Results: Our study sample involved 624 COHESION Study participants aged 50 ± 16years (mean±SD), mainly women (78%), White (86%), and university graduates (64%). The average sleep duration was 7.8 (1.4) hours. Sleep duration was shorter according to the number of children in the household, income dissatisfaction, and type of dwelling in multivariable models. Sleep was short in those without access to a private outdoor space, or only having a balcony/terrace. In stratified analyses, sleep duration was associated with housing conditions dissatisfaction only in those dissatisfied with their income., Conclusion: Our exploratory study highlights the relationship between housing quality and access to outdoor space, family composition and sleep duration in the context of COVID-19. Our findings also highlight the importance of housing characteristics as sources of observed differences in sleep duration., Competing Interests: Declaration of conflicts of interest None of the authors has any relevant conflicts of interest to report., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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35. Enrichment of T-lymphocytes from leukemic blood using inertial microfluidics toward improved chimeric antigen receptor-T cell manufacturing.
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Elsemary MT, Maritz MF, Smith LE, Warkiani ME, and Thierry B
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- Humans, Microfluidics methods, Leukemia, Lymphocytic, Chronic, B-Cell therapy, Leukemia, Lymphocytic, Chronic, B-Cell immunology, Cell Separation methods, B-Lymphocytes immunology, Precursor Cell Lymphoblastic Leukemia-Lymphoma therapy, Precursor Cell Lymphoblastic Leukemia-Lymphoma immunology, Receptors, Antigen, T-Cell immunology, Receptors, Antigen, T-Cell metabolism, T-Lymphocytes immunology, Receptors, Chimeric Antigen immunology, Immunotherapy, Adoptive methods
- Abstract
Chimeric antigen receptor cell therapy is a successful immunotherapy for the treatment of blood cancers. However, hurdles in their manufacturing remain including efficient isolation and purification of the T-cell starting material. Herein, we describe a one-step separation based on inertial spiral microfluidics for efficient enrichment of T-cells in B-cell acute lymphoblastic leukemia (ALL) and B-cell chronic lymphocytic leukemia patient's samples. In healthy donors used to optimize the process, the lymphocyte purity was enriched from 65% (SD ± 0.2) to 91% (SD ± 0.06) and T-cell purity was enriched from 45% (SD ± 0.1) to 73% (SD ± 0.02). Leukemic samples had higher starting B-cells compared to the healthy donor samples. Efficient enrichment and recovery of lymphocytes and T-cells were achieved in ALL samples with B-cells, monocytes and leukemic blasts depleted by 80% (SD ± 0.09), 89% (SD ± 0.1) and 74% (SD ± 0.09), respectively, and a 70% (SD ± 0.1) T-cell recovery. Chronic lymphocytic leukemia samples had lower T-cell numbers, and the separation process was less efficient compared to the ALL. This study demonstrates the use of inertial microfluidics for T-cell enrichment and depletion of B-cell blasts in ALL, suggesting its potential to address a key bottleneck of the chimeric antigen receptor-T manufacturing workflow., Competing Interests: Declaration of competing interest The authors declare no conflict of interest., (Copyright © 2024 International Society for Cell & Gene Therapy. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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36. A Clinical-Grade Partially Decellularized Matrix for Tracheal Replacement: Validation In Vitro and In Vivo in a Porcine Model.
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Arakelian L, Léger M, Kellouche S, Agniel R, Bruneval P, Allain JM, Caputo V, Gendron N, Gozlan R, Bargui R, Vigouroux A, Sansac C, Jarraya M, Denoyelle F, Larghero J, and Thierry B
- Abstract
The management of extensive tracheal resection followed by circumferential replacement remains a surgical challenge. Numerous techniques are proposed with mixed results. Partial decellularization of the trachea with the removal of the mucosal and submucosal cells is a promising method, reducing immunogenicity while preserving the biomechanical properties of the final matrix. Despite many research protocols and proofs of concept, no standardized clinical grade protocol is described. Furthermore, local and systemic biointegration mechanisms of decellularized trachea are not well known. Therefore, in a translational research perspective, this work set up a partial tracheal decellularization protocol in line with Cell and Tissue Products regulations. Extensive characterization of the final product is performed in vitro and in vivo. The results show that the Partially Decellularized Trachea (PDT) is cell-free in the mucosa and submucosa, while the cartilage structure is preserved, maintaining the biomechanical properties of the trachea. When implanted in the muscle in vivo for 28 days, no systemic inflammation is observed, and locally, the PDT shows an excellent biointegration and vascularization. No signs of graft rejection are observed. These encouraging results confirmed the efficacy of the clinical grade PDT production protocol, which is an important step for future clinical applications., (© 2024 The Author(s). Advanced Biology published by Wiley‐VCH GmbH.)
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- 2024
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37. Formation of Zwitterionic and Self-Healable Hydrogels via Amino-yne Click Chemistry for Development of Cellular Scaffold and Tumor Spheroid Phantom for MRI.
- Author
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Nguyen CTV, Chow SKK, Nguyen HN, Liu T, Walls A, Withey S, Liebig P, Mueller M, Thierry B, Yang CT, and Huang CJ
- Subjects
- Mice, Animals, NIH 3T3 Cells, Humans, Spheroids, Cellular drug effects, Biocompatible Materials chemistry, Biocompatible Materials chemical synthesis, Biocompatible Materials pharmacology, Cell Survival drug effects, Tissue Scaffolds chemistry, Phantoms, Imaging, Click Chemistry, Hydrogels chemistry, Hydrogels chemical synthesis, Magnetic Resonance Imaging
- Abstract
In situ-forming biocompatible hydrogels have great potential in various medical applications. Here, we introduce a pH-responsive, self-healable, and biocompatible hydrogel for cell scaffolds and the development of a tumor spheroid phantom for magnetic resonance imaging. The hydrogel (pMAD) was synthesized via amino-yne click chemistry between poly(2-methacryloyloxyethyl phosphorylcholine- co -2-aminoethylmethacrylamide) and dialkyne polyethylene glycol. Rheology analysis, compressive mechanical testing, and gravimetric analysis were employed to investigate the gelation time, mechanical properties, equilibrium swelling, and degradability of pMAD hydrogels. The reversible enamine and imine bond mechanisms leading to the sol-to-gel transition in acidic conditions (pH ≤ 5) were observed. The pMAD hydrogel demonstrated potential as a cellular scaffold, exhibiting high viability and NIH-3T3 fibroblast cell encapsulation under mild conditions (37 °C, pH 7.4). Additionally, the pMAD hydrogel also demonstrated the capability for in vitro magnetic resonance imaging of glioblastoma tumor spheroids based on the chemical exchange saturation transfer effect. Given its advantages, the pMAD hydrogel emerges as a promising material for diverse biomedical applications, including cell carriers, bioimaging, and therapeutic agent delivery.
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- 2024
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38. Full circumferential human tracheal replacement: a systematic review.
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Thierry B, Arakelian L, Denoyelle F, Larghero J, and Wurtz A
- Subjects
- Humans, Plastic Surgery Procedures methods, Tissue Engineering methods, Trachea surgery
- Abstract
Full Circumferential Tracheal Replacement (FCTR) is a surgical challenge, indicated in rare cases of extensive tracheal resection, with no consensus on surgical technique or materials. A systematic review according to PRISMA guidelines was carried out from 2000 to 2022 to identify cases of FCTR, to compare surgical indications, the nature of the tracheal substitutes and their immunological characteristics, surgical replacement techniques and vascularization. Thirty-seven patients, including five children, underwent FCTR surgery using 4 different techniques: thyrotracheal complex allograft (n = 2), aorta (n = 12), autologous surgical reconstruction (n = 19), tissue-engineered decellularized trachea (n = 4). The mean follow-up was 4 years. Of the 15 deceased patients, 10 died of the progression of the initial pathology. For the majority of the teams, particular care was given to the vascularization of the substitute, in order to guarantee long-term biointegration. This included either direct vascularization via vascular anastomosis, or an indirect technique involving envelopment of the avascular substitute in a richly vascularized tissue. Stent placement was standard, except for autologous surgical reconstructions where tracheal caliber was stable. Internal stents were frequently complicated by granulation and stenosis. Although epithelial coverage is essential to limit endoluminal proliferation and act as a barrier, fully functional ciliated airway epithelium did not seem to be necessary. In order to facilitate future comparisons, a standardized clinical trial, respecting regulatory constraints, including routine follow-up with tracheal biomechanics assessment and scheduled biopsies could be proposed. It would help collecting information such as dynamics and mechanisms of tracheal bio-integration and regeneration., (© The Author(s) 2024. Published by Oxford University Press on behalf of the European Association for Cardio-Thoracic Surgery. All rights reserved.)
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- 2024
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39. STROBE-GEMA: a STROBE extension for reporting of geographically explicit ecological momentary assessment studies.
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Kingsbury C, Buzzi M, Chaix B, Kanning M, Khezri S, Kiani B, Kirchner TR, Maurel A, Thierry B, and Kestens Y
- Abstract
Context: While a growing body of research has been demonstrating how exposure to social and built environments relate to various health outcomes, specific pathways generally remain poorly understood. But recent technological advancements have enabled new study designs through continuous monitoring using mobile sensors and repeated questionnaires. Such geographically explicit momentary assessments (GEMA) make it possible to link momentary subjective states, behaviors, and physiological parameters to momentary environmental conditions, and can help uncover the pathways linking place to health. Despite its potential, there is currently no review of GEMA studies detailing how location data is used to measure environmental exposure, and how this in turn is linked to momentary outcomes of interest. Moreover, a lack of standard reporting of such studies hampers comparability and reproducibility., Aims: The objectives of this research were twofold: 1) conduct a systematic review of GEMA studies that link momentary measurement with environmental data obtained from geolocation data, and 2) develop a STROBE extension guideline for GEMA studies., Method: The review followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Inclusion criteria consisted of a combination of repeated momentary measurements of a health state or behavior with GPS coordinate collection, and use of these location data to derive momentary environmental exposures. To develop the guideline, the variables extracted for the systematic review were compared to elements of the STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) and CREMAS (CRedibility of Evidence from Multiple Analyses of the Same data) checklists, to provide a new guideline for GEMA studies. An international panel of experts participated in a consultation procedure to collectively develop the proposed checklist items. RESULTS AND DEVELOPED TOOLS: A total of 20 original GEMA studies were included in the review. Overall, several key pieces of information regarding the GEMA methods were either missing or reported heterogeneously. Our guideline provides a total of 27 categories (plus 4 subcategories), combining a total of 70 items. The 22 categories and 32 items from the original STROBE guideline have been integrated in our GEMA guideline. Eight categories and 6 items from the CREMAS guideline have been included to our guideline. We created one new category (namely "Consent") and added 32 new items specific to GEMA studies., Conclusions and Recommendations: This study offers a systematic review and a STROBE extension guideline for the reporting of GEMA studies. The latter will serve to standardize the reporting of GEMA studies, as well as facilitate the interpretation of results and their generalizability. In short, this work will help researchers and public health professionals to make the most of this method to advance our understanding of how environments influence health., (© 2024. The Author(s).)
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- 2024
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40. Respiratory polygraphy in children with bronchopulmonary dysplasia: a retrospective study.
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De Pieri C, Fauroux B, Khirani S, Thierry B, Delacourt C, Cogo P, and Amaddeo A
- Subjects
- Humans, Female, Male, Retrospective Studies, Infant, Infant, Newborn, Child, Preschool, Respiration, Artificial, Polysomnography, Sleep Apnea, Obstructive therapy, Sleep Apnea, Obstructive diagnosis, Bronchopulmonary Dysplasia therapy, Bronchopulmonary Dysplasia diagnosis, Infant, Premature, Continuous Positive Airway Pressure
- Abstract
Background: Periodic assessment of the need for oxygen supplementation and/or mechanical ventilation in children with severe bronchopulmonary dysplasia (BPD) is crucial. The aim of the study was to analyze the indications and results of respiratory polygraphies (RP) performed in preterm infants with BPD followed at a tertiary university hospital., Methods: All subjects <5-year-old with BPD who had a RP between September and February 2018 were included. The indications and results of RP and consequent medical management were analyzed., Results: Fourteen infants (9 females, mean gestational age 27.6±3.3 weeks) underwent a RP at mean age of 26.4±19.4 months. Five subjects were evaluated for the need of long-term respiratory support (RS), 3 started continuous positive airway pressure (CPAP), 2 were weaned from RS. Four subjects underwent RP for suspected obstructive sleep apnea (OSA), one started on CPAP. Central apnea syndrome (CSA) was confirmed in 2 subjects and one was started on non-invasive ventilation. RP allowed safe tracheostomy decannulation in 2 subjects. Finally, RP was normal in one subject who had a brief resolved unexplained event., Conclusions: RP represents an important tool for the evaluation of children with BPD and leads to important therapeutic decisions.
- Published
- 2024
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41. The off-the-record stories primatologists tell each other.
- Author
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Thierry B
- Subjects
- Animals
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- 2024
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42. Associations between gentrification, census tract-level socioeconomic status, and cycling infrastructure expansions in Montreal, Canada.
- Author
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Kiani B, Thierry B, Apparicio P, Firth C, Fuller D, Winters M, and Kestens Y
- Abstract
Background: Cycling infrastructure investments support active transportation, improve population health, and reduce health inequities. This study examines the relationship between changes in cycling infrastructure (2011-2016) and census tract (CT)-level measures of material deprivation, visible minorities, and gentrification in Montreal., Methods: Our outcomes are the length of protected bike lanes, cyclist-only paths, multi-use paths, and on-street bike lanes in 2011, and change in total length of bike lanes between 2011 and 2016 at the CT level. Census data provided measures of the level of material deprivation and of the percentage of visible minorities in 2011, and if a CT gentrified between 2011 and 2016. Using a hurdle modeling approach, we explore associations among these CT-level socioeconomic measures, gentrification status, baseline cycling infrastructure (2011), and its changes (2011-2016). We further tested if these associations varied depending on the baseline level of existing infrastructure, to assess if areas with originally less resources benefited less or more., Results: In 2011, CTs with higher level of material deprivation or greater percentages of visible minorities had less cycling infrastructure. Overall, between 2011 and 2016, cycling infrastructure increased from 7.0% to 10.9% of the road network, but the implementation of new cycling infrastructure in CTs with no pre-existing cycling infrastructure in 2011 was less likely to occur in CTs with a higher percentage of visible minorities. High-income CTs that were ineligible for gentrification between 2011 and 2016 benefited less from new cycling infrastructure implementations compared to low-income CTs that were not gentrified during the same period., Conclusion: Montreal's municipal cycling infrastructure programs did not exacerbate socioeconomic disparities in cycling infrastructure from 2011 to 2016 in CTs with pre-existing infrastructure. However, it is crucial to prioritize the implementation of cycling infrastructure in CTs with high populations of visible minorities, particularly in CTs where no cycling infrastructure currently exists., Competing Interests: The authors declare no conflict of interest., (© 2024 The Authors.)
- Published
- 2024
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43. Comparing Location Data From Smartphone and Dedicated Global Positioning System Devices: Implications for Epidemiologic Research.
- Author
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Thierry B, Stanley K, Kestens Y, Winters M, and Fuller D
- Subjects
- Humans, Geographic Information Systems, Surveys and Questionnaires, Ontario, Smartphone, Mobile Applications
- Abstract
In this study, we compared location data from a dedicated Global Positioning System (GPS) device with location data from smartphones. Data from the Interventions, Equity, and Action in Cities Team (INTERACT) Study, a study examining the impact of urban-form changes on health in 4 Canadian cities (Victoria, Vancouver, Saskatoon, and Montreal), were used. A total of 337 participants contributed data collected for about 6 months from the Ethica Data smartphone application (Ethica Data Inc., Toronto, Ontario, Canada) and the SenseDoc dedicated GPS (MobySens Technologies Inc., Montreal, Quebec, Canada) during the period 2017-2019. Participants recorded an average total of 14,781 Ethica locations (standard deviation, 19,353) and 197,167 SenseDoc locations (standard deviation, 111,868). Dynamic time warping and cross-correlation were used to examine the spatial and temporal similarity of GPS points. Four activity-space measures derived from the smartphone app and the dedicated GPS device were compared. Analysis showed that cross-correlations were above 0.8 at the 125-m resolution for the survey and day levels and increased as cell size increased. At the day or survey level, there were only small differences between the activity-space measures. Based on our findings, we recommend dedicated GPS devices for studies where the exposure and the outcome are both measured at high frequency and when the analysis will not be aggregate. When the exposure and outcome are measured or will be aggregated to the day level, the dedicated GPS device and the smartphone app provide similar results., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2024
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44. International pediatric otolaryngology group (IPOG) consensus on approach to aspiration.
- Author
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Aldriweesh B, Alkhateeb A, Boudewyns A, Chan CY, Chun RH, El-Hakim HG, Fayoux P, Gerber ME, Kanotra S, Kaspy K, Kubba H, Lambert EM, Luscan R, Parikh SR, Rahbar R, Rickert SM, Russell J, Rutter M, Schroeder JW Jr, Schwarz Y, Sobol SE, Thevasagayam R, Thierry B, Thompson DM, Valika T, Watters K, Wei JL, Wyatt M, Zur KB, and Daniel SJ
- Subjects
- Infant, Child, Humans, Consensus, Surveys and Questionnaires, Delphi Technique, Otolaryngology
- Abstract
Objective: To provide recommendations for a comprehensive management approach for infants and children presenting with symptoms or signs of aspiration., Methods: Three rounds of surveys were sent to authors from 23 institutions worldwide. The threshold for the critical level of agreement among respondents was set at 80 %. To develop the definition of "intractable aspiration," each author was first asked to define the condition. Second, each author was asked to complete a 5-point Likert scale to specify the level of agreement with the definition derived in the first step., Results: Recommendations by the authors regarding the clinical presentation, diagnostic considerations, and medical and surgical management options for aspiration in children., Conclusion: Approach to pediatric aspiration is best achieved by implementing a multidisciplinary approach with a comprehensive investigation strategy and different treatment options., Competing Interests: Declaration of competing interest None declared, (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2024
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45. How is the COVID-19 pandemic impacting our life, mental health, and well-being? Design and preliminary findings of the pan-Canadian longitudinal COHESION study.
- Author
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Gabet S, Thierry B, Wasfi R, Simonelli G, Hudon C, Lessard L, Dubé È, Nasri B, Kestens Y, and Moullec G
- Subjects
- Female, Humans, Male, Depression, Ontario, Pandemics, Quebec, Social Determinants of Health, COVID-19 epidemiology, COVID-19 psychology, Mental Health, Social Interaction
- Abstract
Background: With the advent of the COVID-19 pandemic, in-person social interactions and opportunities for accessing resources that sustain health and well-being have drastically reduced. We therefore designed the pan-Canadian prospective COVID-19: HEalth and Social Inequities across Neighbourhoods (COHESION) cohort to provide a deeper understanding of how the COVID-19 pandemic context affects mental health and well-being, key determinants of health, and health inequities., Methods: This paper presents the design of the two-phase COHESION Study, and descriptive results from the first phase conducted between May 2020 and September 2021. During that period, the COHESION research platform collected monthly data linked to COVID-19 such as infection and vaccination status, perceptions and attitudes regarding pandemic-related measures, and information on participants' physical and mental health, well-being, sleep, loneliness, resilience, substances use, living conditions, social interactions, activities, and mobility., Results: The 1,268 people enrolled in the Phase 1 COHESION Study are for the most part from Ontario (47%) and Quebec (33%), aged 48 ± 16 years [mean ± standard deviation (SD)], and mainly women (78%), White (85%), with a university degree (63%), and living in large urban centers (70%). According to the 298 ± 68 (mean ± SD) prospective questionnaires completed each month on average, the first year of follow-up reveals significant temporal variations in standardized indexes of well-being, loneliness, anxiety, depression, and psychological distress., Conclusions: The COHESION Study will allow identifying trajectories of mental health and well-being while investigating their determinants and how these may vary by subgroup, over time, and across different provinces in Canada, in varying context including the pandemic recovery period. Our findings will contribute valuable insights to the urban health field and inform future public health interventions., (© 2023. Crown.)
- Published
- 2023
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46. Comparison of in vitro growth characteristics of Cryptosporidium hominis (IdA15G1) and Cryptosporidium parvum (Iowa-IIaA17G2R1 and IIaA18G3R1).
- Author
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Gunasekera S, Clode PL, King B, Monis P, Thierry B, Carr JM, Chopra A, Watson M, O'Dea M, Hijjawi N, and Ryan U
- Subjects
- Child, Animals, Humans, Child, Preschool, Iowa, Life Cycle Stages, Cryptosporidium, Cryptosporidium parvum, Cryptosporidiosis
- Abstract
Cryptosporidium is a major cause of diarrhoeal disease and mortality in young children in resource-poor countries, for which no vaccines or adequate therapeutic options are available. Infection in humans is primarily caused by two species: C. hominis and C. parvum. Despite C. hominis being the dominant species infecting humans in most countries, very little is known about its growth characteristics and life cycle in vitro, given that the majority of our knowledge of the in vitro development of Cryptosporidium has been based on C. parvum. In the present study, the growth and development of two C. parvum isolates (subtypes Iowa-IIaA17G2R1 and IIaA18G3R1) and one C. hominis isolate (subtype IdA15G1) in HCT-8 cells were examined and compared at 24 h and 48 h using morphological data acquired with scanning electron microscopy. Our data indicated no significant differences in the proportion of meronts or merozoites between species or subtypes at either time-point. Sexual development was observed at the 48-h time-point across both species through observations of both microgamonts and macrogamonts, with a higher frequency of macrogamont observations in C. hominis (IdA15G1) cultures at 48-h post-infection compared to both C. parvum subtypes. This corresponded to differences in the proportion of trophozoites observed at the same time point. No differences in proportion of microgamonts were observed between the three subtypes, which were rarely observed across all cultures. In summary, our data indicate that asexual development of C. hominis is similar to that of C. parvum, while sexual development is accelerated in C. hominis. This study provides new insights into differences in the in vitro growth characteristics of C. hominis when compared to C. parvum, which will facilitate our understanding of the sexual development of both species., (© 2023. The Author(s).)
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- 2023
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47. Studying the Tonkean macaques of Strasbourg, a tale full of sound and fury.
- Author
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Thierry B
- Subjects
- Animals, Cognition, Indonesia, Social Behavior, Macaca psychology
- Abstract
In this paper, I chronicle the Strasbourg population of Tonkean macaques (Macaca tonkeana) over a period of half a century. In 1972, Tonkean macaques were imported from Sulawesi, Indonesia, to eastern France, leading to the establishment of two social groups in the Strasbourg region several years later. Our research team studied the social behavior and cognitive abilities of these Tonkean macaques for four decades. The species is characterized by a high degree of social tolerance. This has proven to be very informative in comparative studies of macaque social behavior, opening a new perspective on the evolution of primate societies. Over the years, the population has grown, and more social groups have been formed. However, the fact that some of the Tonkean macaques were healthy carriers of the herpes B virus led to disagreements over their management and eventually to the elimination of the positive individuals. Many individuals from the Strasbourg population are now kept in sanctuaries, and the number of captive breeding groups is limited. We still have much to learn about Tonkean macaques and there is a need for studies carried out in their native habitat in Sulawesi., (© 2023. The Author(s), under exclusive licence to Japan Monkey Centre.)
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- 2023
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48. Hydrophobic ion pairing and microfluidic nanoprecipitation enable efficient nanoformulation of a small molecule indolamine 2, 3-dioxygenase inhibitor immunotherapeutic.
- Author
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Badiee P, Maritz MF, Dehghankelishadi P, Dmochowska N, and Thierry B
- Abstract
Blockade of programmed cell death-1 (PD-1) is a transformative immunotherapy. However, only a fraction of patients benefit, and there is a critical need for broad-spectrum checkpoint inhibition approaches that both enhance the recruitment of cytotoxic immune cells in cold tumors and target resistance pathways. Indoleamine 2, 3-dioxygenase (IDO) small molecule inhibitors are promising but suboptimal tumor bioavailability and dose-limiting toxicity have limited therapeutic benefits in clinical trials. This study reports on a nanoformulation of the IDO inhibitor navoximod within polymeric nanoparticles prepared using a high-throughput microfluidic mixing device. Hydrophobic ion pairing addresses the challenging physicochemical properties of navoximod, yielding remarkably high loading (>10%). The nanoformulation efficiently inhibits IDO and, in synergy with PD-1 antibodies improves the anti-cancer cytotoxicity of T-cells, in vitro and in vivo. This study provides new insight into the IDO and PD-1 inhibitors synergy and validates hydrophobic ion pairing as a simple and clinically scalable formulation approach., Competing Interests: The authors have no conflicts of interest to declare., (© 2023 The Authors. Bioengineering & Translational Medicine published by Wiley Periodicals LLC on behalf of American Institute of Chemical Engineers.)
- Published
- 2023
- Full Text
- View/download PDF
49. Development and qualification of clinical grade decellularized and cryopreserved human esophagi.
- Author
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Godefroy W, Faivre L, Sansac C, Thierry B, Allain JM, Bruneval P, Agniel R, Kellouche S, Monasson O, Peroni E, Jarraya M, Setterblad N, Braik M, Even B, Cheverry S, Domet T, Albanese P, Larghero J, Cattan P, and Arakelian L
- Subjects
- Mice, Animals, Humans, Tissue Engineering methods, Cryopreservation, Sodium Dodecyl Sulfate chemistry, Esophagus, Tissue Scaffolds chemistry, Extracellular Matrix
- Abstract
Tissue engineering is a promising alternative to current full thickness circumferential esophageal replacement methods. The aim of our study was to develop a clinical grade Decellularized Human Esophagus (DHE) for future clinical applications. After decontamination, human esophagi from deceased donors were placed in a bioreactor and decellularized with sodium dodecyl sulfate (SDS) and ethylendiaminetetraacetic acid (EDTA) for 3 days. The esophagi were then rinsed in sterile water and SDS was eliminated by filtration on an activated charcoal cartridge for 3 days. DNA was removed by a 3-hour incubation with DNase. A cryopreservation protocol was evaluated at the end of the process to create a DHE cryobank. The decellularization was efficient as no cells and nuclei were observed in the DHE. Sterility of the esophagi was obtained at the end of the process. The general structure of the DHE was preserved according to immunohistochemical and scanning electron microscopy images. SDS was efficiently removed, confirmed by a colorimetric dosage, lack of cytotoxicity on Balb/3T3 cells and mesenchymal stromal cell long term culture. Furthermore, DHE did not induce lymphocyte proliferation in-vitro. The cryopreservation protocol was safe and did not affect the tissue, preserving the biomechanical properties of the DHE. Our decellularization protocol allowed to develop the first clinical grade human decellularized and cryopreserved esophagus., (© 2023. Springer Nature Limited.)
- Published
- 2023
- Full Text
- View/download PDF
50. Rapid and reliable ultrasensitive detection of pathogenic H9N2 viruses through virus-binding phage nanofibers decorated with gold nanoparticles.
- Author
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Hou J, Qian X, Xu Y, Guo Z, Thierry B, Yang CT, Zhou X, and Mao C
- Subjects
- Animals, Gold, Peptides, Bacteriophages, Biosensing Techniques, Influenza A Virus, H9N2 Subtype, Influenza in Birds diagnosis, Metal Nanoparticles, Nanofibers
- Abstract
The rapid and sensitive detection of pathogenic viruses is important for controlling pandemics. Herein, a rapid, ultrasensitive, optical biosensing scheme was developed to detect avian influenza virus H9N2 using a genetically engineered filamentous M13 phage probe. The M13 phage was genetically engineered to bear an H9N2-binding peptide (H9N2BP) at the tip and a gold nanoparticle (AuNP)-binding peptide (AuBP) on the sidewall to form an engineered phage nanofiber, M13@H9N2BP@AuBP. Simulated modelling showed that M13@H9N2BP@AuBP enabled a 40-fold enhancement of the electric field enhancement in surface plasmon resonance (SPR) compared to conventional AuNPs. Experimentally, this signal enhancement scheme was employed for detecting H9N2 particles with a sensitivity down to 6.3 copies/mL (1.04 × 10
-5 fM). The phage-based SPR scheme can detect H9N2 viruses in real allantoic samples within 10 min, even at very low concentrations beyond the detection limit of quantitative polymerase chain reaction (qPCR). Moreover, after capturing the H9N2 viruses on the sensor chip, the H9N2-binding phage nanofibers can be quantitatively converted into plaques that are visible to the naked eye for further quantification, thereby allowing us to enumerate the H9N2 virus particles through a second mode to cross-validate the SPR results. This novel phage-based biosensing strategy can be employed to detect other pathogens because the H9N2-binding peptides can be easily switched with other pathogen-binding peptides using phage display technology., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)- Published
- 2023
- Full Text
- View/download PDF
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