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2. Figure 3b from: de Mestier A, Mulcahy D, Harris DJ, Korotkova N, Long S, Häffner E, Paton A, Schiller EK, Leliaert F, Mackenzie-Dodds J, Fulcher T, Stahls G, von Rintelen T, Martín MP, Lücking R, Williams C, Lyal CHC, Güntsch A, Aronsson H, Castelin M, Pielach A, Poczai P, Ruiz-León Y, Sanmartin Bastida I, Thines M, Droege G (2023) Policies Handbook on Using Molecular Collections. Research Ideas and Outcomes 9: e102908. https://doi.org/10.3897/rio.9.e102908

Author

de Mestier, Astrid, primary, Mulcahy, Daniel, additional, Harris, David J., additional, Korotkova, Nadja, additional, Long, Sarah, additional, Häffner, Eva, additional, Paton, Alan, additional, Schiller, Edmund, additional, Leliaert, Frederik, additional, Mackenzie-Dodds, Jacqueline, additional, Fulcher, Tim, additional, Stahls, Gunilla, additional, von Rintelen, Thomas, additional, Martín, María P., additional, Lücking, Robert, additional, Williams, China, additional, Lyal, Christopher, additional, Güntsch, Anton, additional, Aronsson, Heléne, additional, Castelin, Magalie, additional, Pielach, Anna, additional, Poczai, Peter, additional, Ruiz-León, Yolanda, additional, Sanmartin Bastida, Isabel, additional, Thines, Marco, additional, and Droege, Gabriele, additional

Published
2023
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3. Figure 2 from: de Mestier A, Mulcahy D, Harris DJ, Korotkova N, Long S, Häffner E, Paton A, Schiller EK, Leliaert F, Mackenzie-Dodds J, Fulcher T, Stahls G, von Rintelen T, Martín MP, Lücking R, Williams C, Lyal CHC, Güntsch A, Aronsson H, Castelin M, Pielach A, Poczai P, Ruiz-León Y, Sanmartin Bastida I, Thines M, Droege G (2023) Policies Handbook on Using Molecular Collections. Research Ideas and Outcomes 9: e102908. https://doi.org/10.3897/rio.9.e102908

Author

de Mestier, Astrid, primary, Mulcahy, Daniel, additional, Harris, David J., additional, Korotkova, Nadja, additional, Long, Sarah, additional, Häffner, Eva, additional, Paton, Alan, additional, Schiller, Edmund, additional, Leliaert, Frederik, additional, Mackenzie-Dodds, Jacqueline, additional, Fulcher, Tim, additional, Stahls, Gunilla, additional, von Rintelen, Thomas, additional, Martín, María P., additional, Lücking, Robert, additional, Williams, China, additional, Lyal, Christopher, additional, Güntsch, Anton, additional, Aronsson, Heléne, additional, Castelin, Magalie, additional, Pielach, Anna, additional, Poczai, Peter, additional, Ruiz-León, Yolanda, additional, Sanmartin Bastida, Isabel, additional, Thines, Marco, additional, and Droege, Gabriele, additional

Published
2023
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4. Policies Handbook on Using Molecular Collections

Author

de Mestier, Astrid, primary, Mulcahy, Daniel, additional, Harris, David J., additional, Korotkova, Nadja, additional, Long, Sarah, additional, Häffner, Eva, additional, Paton, Alan, additional, Schiller, Edmund, additional, Leliaert, Frederik, additional, Mackenzie-Dodds, Jacqueline, additional, Fulcher, Tim, additional, Stahls, Gunilla, additional, von Rintelen, Thomas, additional, Martín, María P., additional, Lücking, Robert, additional, Williams, China, additional, Lyal, Christopher, additional, Güntsch, Anton, additional, Aronsson, Heléne, additional, Castelin, Magalie, additional, Pielach, Anna, additional, Poczai, Peter, additional, Ruiz-León, Yolanda, additional, Sanmartin Bastida, Isabel, additional, Thines, Marco, additional, and Droege, Gabriele, additional

Published
2023
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5. Figure 1 from: de Mestier A, Mulcahy D, Harris DJ, Korotkova N, Long S, Häffner E, Paton A, Schiller EK, Leliaert F, Mackenzie-Dodds J, Fulcher T, Stahls G, von Rintelen T, Martín MP, Lücking R, Williams C, Lyal CHC, Güntsch A, Aronsson H, Castelin M, Pielach A, Poczai P, Ruiz-León Y, Sanmartin Bastida I, Thines M, Droege G (2023) Policies Handbook on Using Molecular Collections. Research Ideas and Outcomes 9: e102908. https://doi.org/10.3897/rio.9.e102908

Author

de Mestier, Astrid, primary, Mulcahy, Daniel, additional, Harris, David J., additional, Korotkova, Nadja, additional, Long, Sarah, additional, Häffner, Eva, additional, Paton, Alan, additional, Schiller, Edmund, additional, Leliaert, Frederik, additional, Mackenzie-Dodds, Jacqueline, additional, Fulcher, Tim, additional, Stahls, Gunilla, additional, von Rintelen, Thomas, additional, Martín, María P., additional, Lücking, Robert, additional, Williams, China, additional, Lyal, Christopher, additional, Güntsch, Anton, additional, Aronsson, Heléne, additional, Castelin, Magalie, additional, Pielach, Anna, additional, Poczai, Peter, additional, Ruiz-León, Yolanda, additional, Sanmartin Bastida, Isabel, additional, Thines, Marco, additional, and Droege, Gabriele, additional

Published
2023
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6. Policies Handbook on Using Molecular Collections

Author

de Mestier, Astrid, primary, Mulcahy, Daniel, additional, Harris, David J., additional, Korotkova, Nadja, additional, Long, Sarah, additional, Häffner, Eva, additional, Paton, Alan, additional, Schiller, Edmund, additional, Leliaert, Frederik, additional, Mackenzie-Dodds, Jacqueline, additional, Fulcher, Tim, additional, Stahls, Gunilla, additional, von Rintelen, Thomas, additional, Martín, María P., additional, Lücking, Robert, additional, Williams, China, additional, Lyal, Christopher, additional, Güntsch, Anton, additional, Aronsson, Heléne, additional, Castelin, Magalie, additional, Pielach, Anna, additional, Poczai, Peter, additional, Ruiz León, Yolanda, additional, Sanmartin Bastida, Isabel, additional, Thines, Marco, additional, and Droege, Gabriele, additional

Published
2022
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8. Policies Handbook on Using Molecular Collections

Author

de Mestier, Astrid, Mulcahy, Daniel, Harris, David J., Korotkova, Nadja, Long, Sarah, Häffner, Eva, Paton, Alan, Schiller, Edmund, Leliaert, Frederik, Mackenzie-Dodds, Jacqueline, Fulcher, Tim, Stahls, Gunilla, von Rintelen, Thomas, Martín, María P., Lücking, Robert, Williams, China, Lyal, Chris, Güntsch, Anton, Aronsson, Heléne, Castelin, Magalie, Pielach, Anna, Poczai, Peter, Ruiz-León, Yolanda, Sanmartin Bastida, Isabel, Thines, Marco, and Droege, Gabriele

Subjects
international regulation, best practice, sequence submission, handbook, ABS, loan, Molecular collection
Abstract

The access to molecular collections worldwide greatly improves the quality of scientific research by making a growing number of data available for investigation. The efforts on digitization also aim at facilitating the exchange of material between institutions and researchers that must follow regulations in place and respect best practice. The handbook presented here proposes a workflow to follow to safely exchange materials, in accordance with international laws and legislations. We make numerous recommendations here to help the institutions and researchers to navigate the legal and administrative procedures, to manage molecular collections in the best way possible.

Published
2022

9. A molecular-based identification resource for the arthropods of Finland

Author

Roslin, Tomas, Somervuo, Panu, Pentinsaari, Mikko, Hebert, Paul D. N., Agda, Jireh, Ahlroth, Petri, Anttonen, Perttu, Aspi, Jouni, Blagoev, Gergin, Blanco, Santiago, Chan, Dean, Clayhills, Tom, deWaard, Jeremy, deWaard, Stephanie, Elliot, Tyler, Elo, Riikka, Haapala, Sami, Helve, Eero, Ilmonen, Jari, Hirvonen, Petri, Ho, Chris, Itämies, Juhani, Ivanov, Vladislav, Jakovlev, Jevgeni, Juslen, Aino, Jussila, Reijo, Kahanpaa, Jere, Kaila, Lauri, Kaitila, Jari-Pekka, Kakko, Ari, Kakko, Iiro, Karhu, Ali, Karjalainen, Sami, Kjaerandsen, Jostein, Koskinen, Janne, Laasonen, Erkki M., Laasonen, Leena, Laine, Erkka, Lampila, Petri, Levesque-Beaudin, Valerie, Lu, Liuqiong, Lahteenaro, Meri, Majuri, Pekka, Malmberg, Sampsa, Manjunath, Ramya, Martikainen, Petri, Mattila, Jaakko, McKeown, Jaclyn, Metsälä, Petri, Miklasevskaja, Margarita, Miller, Meredith, Miskie, Renee, Naik, Suresh, Nikolova, Nadia, Nupponen, Kari, Ovaskainen, Otso, Österblad, Ika, Paasivirta, Lauri, Pajunen, Timo, Parkko, Petri, Paukkunen, Juho, Penttinen, Ritva, Perez, Kate, Pohjoismaki, Jaakko, Prosser, Sean, Raekunnas, Martti, Rahulan, Miduna, Rannisto, Meeri, Ratnasingham, Sujeevan, Raukko, Pekka, Rinne, Aki, Rintala, Teemu, Miranda Romo, Susana, Salmela, Jukka, Salokannel, Juha, Savolainen, Riitta, Schulman, Leif, Sihvonen, Pasi, Soliman, Dina, Sones, Jayme, Steinke, Claudia, Stahls, Gunilla, Tabell, Jukka, Tiusanen, Mikko, Varkonyi, Gergely, Vesterinen, Eero, Viitanen, Esko, Vikberg, Veli, Viitasaari, Matti, Vilen, Jussi, Warne, Connor, Wei, Catherine, Winqvist, Kaj, Zakharov, Evgeny, and Mutanen, Marko

Subjects
Biological Systematics
Abstract

To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility () at . Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.

Published
2022

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