13 results on '"Sims, Richard P."'
Search Results
2. OceanSODA-UNEXE: a multi-year gridded Amazon and Congo River outflow surface ocean carbonate system dataset
- Author
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Sims, Richard P., primary, Holding, Thomas M., additional, Land, Peter E., additional, Piolle, Jean-Francois, additional, Green, Hannah L., additional, and Shutler, Jamie D., additional
- Published
- 2023
- Full Text
- View/download PDF
3. High interannual surface pCO2 variability in the southern Canadian Arctic Archipelago's Kitikmeot Sea
- Author
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Sims, Richard P., primary, Ahmed, Mohamed M. M., additional, Butterworth, Brian J., additional, Duke, Patrick J., additional, Gonski, Stephen F., additional, Jones, Samantha F., additional, Brown, Kristina A., additional, Mundy, Christopher J., additional, Williams, William J., additional, and Else, Brent G. T., additional
- Published
- 2023
- Full Text
- View/download PDF
4. OceanSODA-UNEXE: a multi-year gridded Amazon and Congo River outflow surface ocean carbonate system dataset
- Author
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Sims, Richard P., Holding, Thomas M., Land, Peter E., Piolle, Jean-francois, Green, Hannah L., Shutler, Jamie D., Sims, Richard P., Holding, Thomas M., Land, Peter E., Piolle, Jean-francois, Green, Hannah L., and Shutler, Jamie D.
- Abstract
Large rivers play an important role in transferring water and all of its constituents, including carbon in its various forms, from the land to the ocean, but the seasonal and inter-annual variations in these riverine flows remain unclear. Satellite Earth observation datasets and reanalysis products can now be used to observe synoptic-scale spatial and temporal variations in the carbonate system within large river outflows. Here, we present the University of Exeter (UNEXE) Satellite Oceanographic Datasets for Acidification (OceanSODA) dataset (OceanSODA-UNEXE) time series, a dataset of the full carbonate system in the surface water outflows of the Amazon (2010–2020) and Congo (2002–2016) rivers. Optimal empirical approaches were used to generate gridded total alkalinity (TA) and dissolved inorganic carbon (DIC) fields in the outflow regions. These combinations were determined by equitably evaluating all combinations of algorithms and inputs against a reference matchup database of in situ observations. Gridded TA and DIC along with gridded temperature and salinity data enable the calculation of the full carbonate system in the surface ocean (which includes pH and the partial pressure of carbon dioxide, pCO2). The algorithm evaluation constitutes a Type-A uncertainty evaluation for TA and DIC, in which model, input and sampling uncertainties are considered. Total combined uncertainties for TA and DIC were propagated through the carbonate system calculation, allowing all variables to be provided with an associated uncertainty estimate. In the Amazon outflow, the total combined uncertainty for TA was 36 µmol kg−1 (weighted root-mean-squared difference, RMSD, of 35 µmol kg−1 and weighted bias of 8 µmol kg−1 for n = 82), whereas it was 44 µmol kg−1 for DIC (weighted RMSD of 44 µmol kg−1 and weighted bias of −6 µmol kg−1 for n = 70). The spatially averaged propagated combined uncertainties for the pCO2 and pH were 85 µatm and 0.08, respectively, where the pH uncertainty was
- Published
- 2023
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5. Variability in sea ice carbonate chemistry: a case study comparing the importance of ikaite precipitation, bottom-ice algae, and currents across an invisible polynya
- Author
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Else, Brent G. T., primary, Cranch, Araleigh, additional, Sims, Richard P., additional, Jones, Samantha, additional, Dalman, Laura A., additional, Mundy, Christopher J., additional, Segal, Rebecca A., additional, Scharien, Randall K., additional, and Guha, Tania, additional
- Published
- 2022
- Full Text
- View/download PDF
6. Tidal mixing of estuarine and coastal waters in the western English Channel is a control on spatial and temporal variability in seawater CO2
- Author
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Sims, Richard P., Bedington, Michael, Schuster, Ute, Watson, Andrew J., Kitidis, Vassilis, Torres, Ricardo, Findlay, Helen S., Fishwick, James R., Brown, Ian, and Bell, Thomas G.
- Abstract
Surface ocean carbon dioxide (CO2) measurements are used to compute the oceanic air–sea CO2 flux. The CO2 flux component from rivers and estuaries is uncertain due to the high spatial and seasonal heterogeneity of CO2 in coastal waters. Existing high-quality CO2 instrumentation predominantly utilises showerhead and percolating style equilibrators optimised for open-ocean observations. The intervals between measurements made with such instrumentation make it difficult to resolve the fine-scale spatial variability of surface water CO2 at timescales relevant to the high frequency variability in estuarine and coastal environments. Here we present a novel dataset with unprecedented frequency and spatial resolution transects made at the Western Channel Observatory in the south-west of the UK from June to September 2016, using a fast-response seawater CO2 system. Novel observations were made along the estuarine–coastal continuum at different stages of the tide and reveal distinct spatial patterns in the surface water CO2 fugacity (fCO2) at different stages of the tidal cycle. Changes in salinity and fCO2 were closely correlated at all stages of the tidal cycle and suggest that the mixing of oceanic and riverine endmembers partially determines the variations in fCO2. The correlation between salinity and fCO2 was different in Cawsand Bay, which could be due to enhanced gas exchange or to enhanced biological activity in the region. The observations demonstrate the complex dynamics determining spatial and temporal patterns of salinity and fCO2 in the region. Spatial variations in observed surface salinity were used to validate the output of a regional high-resolution hydrodynamic model. The model enables a novel estimate of the air–sea CO2 flux in the estuarine–coastal zone. Air–sea CO2 flux variability in the estuarine–coastal boundary region is influenced by the state of the tide because of strong CO2 outgassing from the river plume. The observations and model output demonstrate that undersampling the complex tidal and mixing processes characteristic of estuarine and coastal environment biases quantification of air–sea CO2 fluxes in coastal waters. The results provide a mechanism to support critical national and regional policy implementation by reducing uncertainty in carbon budgets.
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- 2022
7. Tidal mixing of estuarine and coastal waters in the western English Channel is a control on spatial and temporal variability in seawater CO<sub>2</sub>
- Author
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Sims, Richard P., primary, Bedington, Michael, additional, Schuster, Ute, additional, Watson, Andrew J., additional, Kitidis, Vassilis, additional, Torres, Ricardo, additional, Findlay, Helen S., additional, Fishwick, James R., additional, Brown, Ian, additional, and Bell, Thomas G., additional
- Published
- 2022
- Full Text
- View/download PDF
8. OceanSODA-UNEXE: A multi-year gridded Amazon and Congo River outflow surface ocean carbonate system dataset.
- Author
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Sims, Richard P., Holding, Thomas M., Land, Peter E., Piolle, Jean-Francois, Green, Hannah L., and Shutler, Jamie D.
- Subjects
- *
CARBONATE minerals , *CARBONATE reservoirs , *OCEAN , *PARTIAL pressure , *ARTIFICIAL satellites , *CARBONATES , *LANDFORMS , *WATER transfer - Abstract
Large rivers play an important role in transferring water and all of its constituents including carbon in its various forms from the land to the ocean, but the seasonal and inter-annual variations in these riverine flows remain unclear. Satellite Earth observation datasets and reanalysis products can now be used to observe synoptic-scale spatial and temporal variations in the carbonate system within large river outflows. Here we present the OceanSODA-UNEXE time series, a dataset of the full carbonate system in the surface water outflows of the Amazon (2010-2020) and Congo Rivers (2002-2016). Optimal empirical approaches were used to generate gridded Total alkalinity (TA) and dissolved inorganic carbon (DIC) fields in the outflow regions. These combinations were determined by equitably evaluating all combinations of algorithms and inputs against a matchup database of in situ observations. Gridded TA and DIC along with gridded temperature and salinity data enable the calculation of the full carbonate system in the surface ocean. The algorithm evaluation constitutes a Type A uncertainty evaluation for TA and DIC where model, input and sampling uncertainties are considered. Total combined uncertainties for TA and DIC were propagated through the carbonate system calculation allowing all variables to be provided with an associated uncertainty estimate. In the Amazon outflow, the total combined uncertainty for TA was identified as 36 µmol kg-1 (weighted RMSD 35 µmol kg-1 and weighted bias 8 µmol kg-1 for n=82) and for DIC was 44 µmol kg-1 (weighted RMSD 44 µmol kg-1 and weighted bias -6 µmol kg-1 for n=70). The spatially averaged propagated uncertainties for the partial pressure of carbon dioxide (pCO2) and pH are 85 µatm and 0.08 respectively, where the pH uncertainty is relative to an average pH of 8.19. In the Congo outflow, the combined uncertainty for TA was identified as 29 µmol kg-1 (weighted RMSD 28 µmol kg-1 and weighted bias 6 µmol kg-1 for n=102) and for DIC was 40 µmol kg-1 (weighted RMSD 37 µmol kg-1and weighted bias -16 µmol kg-1 for n=77). The spatially averaged propagated uncertainties for pCO2 and pH are 74 µatm and 0.08 respectively, where the pH uncertainty is relative to an average pH of 8.21. The combined uncertainties in TA and DIC in the Amazon and Congo outflows are lower than the natural variability their respective regions allowing the time varying regional variability to be evaluated. Potential uses of these data would be for assessing the spatial and temporal flow of carbon from the Amazon and Congo rivers into the Atlantic and for assessing the riverine driven carbonate system variations experienced by tropical reefs within the outflow regions. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
9. PO-01-111 ELECTROCARDIOGRAPHIC CRITERIA FOR THE PREDICTION OF SUCCESSFUL RIGHT VS. LEFT SIDED RADIOFREQUENCY ABLATION OF PARA-HISIAN PREMATURE VENTRICULAR CONTRACTIONS.
- Author
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Losiniecki, Fergie, Waits, George S., Sims, Richard, Mark, Justin, Laxina, Ian, Thompson, Burke, Lopez, Jose, Long, Matthew, Gowani, Zain, Kroman, Anne M., Dhakal, Bishnu P., Kaplan, Rachel M., Vo, Chau N., Pinski, Sergio L., Gold, Michael R., Wharton, J.M., and Winterfield, Jeffrey R.
- Published
- 2024
- Full Text
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10. High interannual surface pCO2 variability in the Southern Canadian Arctic Archipelago's Kitikmeot Sea.
- Author
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Sims, Richard P., Ahmed, Mohamed, Butterworth, Brian J., Duke, Patrick J., Gonski, Stephen F., Jones, Samantha F., Brown, Kristina A., Mundy, Christopher J., Williams, William J., and Else, Brent. G. T.
- Subjects
ARCHIPELAGOES ,ARCTIC climate ,RESEARCH vessels ,CARBON dioxide ,COMMUNITIES ,SUMMER - Abstract
Warming of the Arctic due to climate change means the Arctic Ocean is now ice-free for longer as sea ice melts earlier and refreezes later. It remains unclear how the extended ice-free period will impact carbon dioxide (CO
2 ) fluxes due to scarcity of surface ocean CO2 measurements. Baseline measurements are urgently needed to understand how air-sea CO2 fluxes will spatially and temporally vary in a changing Arctic Ocean. It is uncertain whether the previous basin-wide surveys are representative of the many smaller bays and inlets that make up the Canadian Arctic Archipelago. By using a research vessel that is based in the remote Inuit community of Cambridge Bay (Ikaluqtuutiak, Nunavut), we have been able to reliably survey pCO2 shortly after ice melt and access previously unsampled bays and inlets in the nearby region. We present four years of consecutive summertime pCO2 measurements collected in the Kitikmeot Sea in the southern Canadian Arctic Archipelago. Overall, we found that this region is a sink for atmospheric CO2 in August (average of all calculated fluxes over the four cruises was -8.3 mmol m-2 d-1 ) but the magnitude of this sink varies substantially between years and locations (average calculated fluxes of 0.41, -7.70, -21.26 and -2.08 mmol m-2 d-1 during the 2016.2017,2018 and 2019 cruises respectively). Surface ocean pCO2 varied by up to 142 μatm between years; this highlights the importance of repeat observations in the Arctic as this high interannual variability would not have been captured by sparse and infrequent measurements. We find that the pCO2 value of the surface ocean at the time of ice melt is extremely important in constraining the magnitude of the air-sea flux throughout the ice-free season. Further constraining the flux in the Kitikmeot Sea will require a better understanding of how pCO2 changes outside of the summer season. Surface ocean pCO2 measurements made in the bays and inlets in the Kitikmeot Sea were ~20-40 μatm lower than in the main channels, and pCO2 measurements made close to ice breakup (i.e. within 2 weeks) were 50-100 μatm lower than measurements made >4 weeks after breakup. As basin-wide surveys of the CAA have focused on the deeper shipping channels and rarely measure close to the ice break-up date, we hypothesize that there may be an observational bias in previous studies, leading to an underestimate of the CO2 sink in the Canadian Arctic Archipelago. These high-resolution measurements constitute an important new baseline for gaining a better understanding of the role this region plays in the uptake of atmospheric CO2 . [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
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11. Mortality Among Patients With Early-Onset Atrial Fibrillation and Rare Variants in Cardiomyopathy and Arrhythmia Genes
- Author
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Yoneda, Zachary T., Anderson, Katherine C., Ye, Fei, Quintana, Joseph A., O’Neill, Matthew J., Sims, Richard A., Sun, Lili, Glazer, Andrew M., Davogustto, Giovanni, El-Harasis, Majd, Laws, James L., Saldivar, Brittany N., Crawford, Diane M., Stricker, Thomas, Wells, Quinn, Darbar, Dawood, Michaud, Gregory F., Stevenson, Lynne W., Lubitz, Steven A., Ellinor, Patrick T., Roden, Dan M., and Shoemaker, M. Benjamin
- Abstract
IMPORTANCE: Patients with early-onset atrial fibrillation (AF) are enriched for rare variants in cardiomyopathy and arrhythmia genes. The clinical significance of these rare variants in patients with early-onset AF is unknown. OBJECTIVE: To assess the association between rare variants in cardiomyopathy and arrhythmia genes detected in patients with early-onset AF and time to death. DESIGN, SETTING, AND PARTICIPANTS: This prospective cohort study included participants with AF diagnosed before 66 years of age who underwent whole-genome sequencing through the National Heart, Lung and Blood Institute’s Trans-Omics for Precision Medicine program. Participants were enrolled from November 23, 1999, to June 2, 2015. Data were analyzed from February 26 to September 19, 2021. EXPOSURES: Rare variants identified in a panel of 145 genes that are included in cardiomyopathy and arrhythmia panels used by commercial clinical genetic testing laboratories. MAIN OUTCOMES AND MEASURES: The primary study outcome was time to death and was adjudicated from medical records and the National Death Index. Multivariable Cox proportional hazards regression was used to evaluate the association of disease-associated variants with risk of death after adjustment for age at AF diagnosis, sex, race, body mass index, left ventricular ejection fraction, and an interaction term of age at AF diagnosis and disease-associated variant status. RESULTS: Among 1293 participants (934 [72%] male; median age at enrollment, 56.0 years; IQR, 48.0-61.0 years), disease-associated (pathogenic or likely pathogenic) rare variants were found in 131 (10%). During a median follow-up of 9.9 years (IQR, 6.9-13.2 years), 219 participants (17%) died. In univariable analysis, disease-associated variants were associated with an increased risk of mortality (hazard ratio, [HR], 1.5; 95% CI, 1.0-2.1; P = .05); the association remained significant in multivariable modeling when adjusted for age at AF diagnosis, sex, race, body mass index, left ventricular ejection fraction, and an interaction term between disease-associated variant status and age at AF diagnosis. The interaction demonstrated that disease-associated variants were associated with a significantly higher risk of mortality compared with no disease-associated variant when AF was diagnosed at a younger age (P = .008 for interaction). Higher body mass index (per IQR: HR, 1.4; 95% CI, 1.2-1.6; P < .001) and lower left ventricular ejection fraction (per IQR: HR, 0.8; 95% CI, 0.7-0.8; P < .001) were associated with higher mortality risk. There were 73 cardiomyopathy-related deaths, 40 sudden deaths, and 10 stroke-related deaths. Mortality among patients with the most prevalent genes with disease-associated variants was 26% (10 of 38 patients) for TTN, 33% (6 of 18) for MYH7, 22% (2 of 9) for LMNA, 0% (0 of 10) for MYH6, and 0% (0 of 8) for KCNQ1. CONCLUSIONS AND RELEVANCE: The findings suggest that rare variants in cardiomyopathy and arrhythmia genes may be associated with increased risk of mortality among patients with early-onset AF, especially those diagnosed at a younger age. Genetic testing may provide important prognostic information for patients with early-onset AF.
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- 2022
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12. Early-Onset Atrial Fibrillation and the Prevalence of Rare Variants in Cardiomyopathy and Arrhythmia Genes
- Author
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Yoneda, Zachary T., Anderson, Katherine C., Quintana, Joseph A., O’Neill, Matthew J., Sims, Richard A., Glazer, Andrew M., Shaffer, Christian M., Crawford, Diane M., Stricker, Thomas, Ye, Fei, Wells, Quinn, Stevenson, Lynne W., Michaud, Gregory F., Darbar, Dawood, Lubitz, Steven A., Ellinor, Patrick T., Roden, Dan M., and Shoemaker, M. Benjamin
- Abstract
IMPORTANCE: Early-onset atrial fibrillation (AF) can be the initial manifestation of a more serious underlying inherited cardiomyopathy or arrhythmia syndrome. OBJECTIVE: To examine the results of genetic testing for early-onset AF. DESIGN, SETTING, AND PARTICIPANTS: This prospective, observational cohort study enrolled participants from an academic medical center who had AF diagnosed before 66 years of age and underwent whole genome sequencing through the National Heart, Lung, and Blood Institute’s Trans-Omics for Precision Medicine program. Participants were enrolled from November 23, 1999, to June 2, 2015. Data analysis was performed from October 24, 2020, to March 11, 2021. EXPOSURES: Rare variants identified in a panel of 145 genes that are included on cardiomyopathy and arrhythmia panels used by commercial clinical genetic testing laboratories. MAIN OUTCOMES AND MEASURES: Sequencing data were analyzed using an automated process followed by manual review by a panel of independent, blinded reviewers. The primary outcome was classification of rare variants using American College of Medical Genetics and Genomics criteria: benign, likely benign, variant of undetermined significance, likely pathogenic, or pathogenic. Disease-associated variants were defined as pathogenic/likely pathogenic variants in genes associated with autosomal dominant or X-linked dominant disorders. RESULTS: Among 1293 participants (934 [72.2%] male; median [interquartile range] age at enrollment, 56 [48-61] years; median [interquartile range] age at AF diagnosis, 50 [41-56] years), genetic testing identified 131 participants (10.1%) with a disease-associated variant, 812 (62.8%) with a variant of undetermined significance, 92 (7.1%) as heterozygous carriers for an autosomal recessive disorder, and 258 (20.0%) with no suspicious variant. The likelihood of a disease-associated variant was highest in participants with AF diagnosed before the age of 30 years (20 of 119 [16.8%; 95% CI, 10.0%-23.6%]) and lowest after the age of 60 years (8 of 112 [7.1%; 95% CI, 2.4%-11.9%]). Disease-associated variants were more often associated with inherited cardiomyopathy syndromes compared with inherited arrhythmias. The most common genes were TTN (n = 38), MYH7 (n = 18), MYH6 (n = 10), LMNA (n = 9), and KCNQ1 (n = 8). CONCLUSIONS AND RELEVANCE: In this cohort study, genetic testing identified a disease-associated variant in 10% of patients with early-onset AF (the percentage was higher if diagnosed before the age of 30 years and lower if diagnosed after the age of 60 years). Most pathogenic/likely pathogenic variants are in genes associated with cardiomyopathy. These results support the use of genetic testing in early-onset AF.
- Published
- 2021
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13. Catheter Ablation for Atrial Fibrillation in Adult Congenital Heart Disease: An International Multicenter Registry Study.
- Author
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Griffiths, Jack R., Nussinovitch, Udi, Liang, Jackson J., Sims, Richard, Yoneda, Zachary T., Bernstein, Hannah M., Viswanathan, Mohan N., Khairy, Paul, Srivatsa, Uma N., Frankel, David S., Marchlinski, Francis E., Sandhu, Amneet, Shoemaker, M. Benjamin, Mohanty, Sanghamitra, Burkhardt, John D., Natale, Andrea, Lakireddy, Dhanunjaya, De Groot, Natasja M.S., Gerstenfeld, Edward P., and Moore, Jeremy P.
- Subjects
ATRIAL fibrillation diagnosis ,MYOCARDIAL depressants ,RESEARCH ,TRANSPOSITION of great vessels ,RESEARCH methodology ,ATRIAL fibrillation ,CATHETER ablation ,CONGENITAL heart disease ,RETROSPECTIVE studies ,ACQUISITION of data ,EVALUATION research ,TREATMENT effectiveness ,COMPARATIVE studies ,PULMONARY veins ,DISEASE complications - Abstract
Background: Data on atrial fibrillation (AF) ablation and outcomes are limited in patients with congenital heart disease (CHD). We aimed to investigate the characteristics of patients with CHD presenting for AF ablation and their outcomes.Methods: A multicenter, retrospective analysis was performed of patients with CHD undergoing AF ablation between 2004 and 2020 at 13 participating centers. The severity of CHD was classified using 2014 Pediatric and Congenital Electrophysiology Society/Heart Rhythm Society guidelines. Clinical data were collected. One-year complete procedural success was defined as freedom from atrial tachycardia or AF in the absence of antiarrhythmic drugs or including previously failed antiarrhythmic drugs (partial success).Results: Of 240 patients, 127 (53.4%) had persistent AF, 62.5% were male, and mean age was 55.2±13.3 years. CHD complexity categories included 147 (61.3%) simple, 68 (28.3%) intermediate, and 25 (10.4%) severe. The most common CHD type was atrial septal defect (n=78). More complex CHD conditions included transposition of the great arteries (n=14), anomalous pulmonary veins (n=13), tetralogy of Fallot (n=8), cor triatriatum (n=7), single ventricle physiology (n=2), among others. The majority (71.3%) of patients had trialed at least one antiarrhythmic drug. Forty-six patients (22.1%) had reduced systemic ventricular ejection fraction <50%, and mean left atrial diameter was 44.1±8.2 mm. Pulmonary vein isolation was performed in 227 patients (94.6%); additional ablation included left atrial linear ablations (40%), complex fractionated atrial electrogram (19.2%), and cavotricuspid isthmus ablation (40.8%). One-year complete and partial success rates were 45.0% and 20.5%, respectively, with no significant difference in the rate of complete success between complexity groups. Overall, 38 patients (15.8%) required more than one ablation procedure. There were 3 (1.3%) major and 13 (5.4%) minor procedural complications.Conclusions: AF ablation in CHD was safe and resulted in AF control in a majority of patients, regardless of complexity. Future work should address the most appropriate ablation targets in this challenging population. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
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