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Introduction: Identifying genomic regions under selection is the most challenging issue for improving important traits in animals. Few studies have focused on identifying genomic regions under selection in sheep. The aim of this study was to identify selective sweeps and to explore the relationship between these and quantitative trait loci (QTL) in both domestic and wild sheep species using single nucleotide polymorphism markers (SNPs). Methods: Genomic data were obtained from the NextGen project, which included genotyping 20 domestic and 14 wild sheep using the Illumina Ovine SNP50K BeadChip. The XP-EHH, iHS, and RSB methods were employed to detect signatures of positive selection. Results: The results of the iHS method indicated 405 and 275 selective sweeps in domestic and wild sheep, respectively. Additionally, RSB and XP-EHH analyses revealed approximately 398 and 479 selective sweeps in domestic and wild sheep, respectively. Some of the genes associated with important QTL traits in domestic sheep include ADGRB3, CADM1, CAPN2, GALNT10, MTR, RELN , and USP25 , while in wild sheep, the relevant genes include ACAN, ACO1, GADL1, MGST3 , and PRDM16. Selective sweeps identified in domestic sheep were associated with body weight, muscle weight, milk protein percentage, and milk yield. In contrast, selective sweeps found in wild sheep were linked to average daily gain, bone weight, carcass fat percentage, and dressing percentage. Discussion: These results indicate that selection by humans and the environment have largely progressed in harmony, highlighting the importance of both economic and environmental traits for survival. Additionally, the identification of potential candidate genes associated with economic traits and genomic regions that have experienced selection can be utilized in sheep breeding programs. However, due to the incomplete information regarding the functional annotation of genes in sheep and the limited sample size, further research with a larger sample group is essential to gain a deeper understanding of the candidate genes linked to economic traits in both domestic and wild sheep. Advancing knowledge in this area can significantly enhance the effectiveness of breeding strategies. The quantitative trait loci identified in this study have the potential to be incorporated into breeding plans for both domestic and wild sheep. [ABSTRACT FROM AUTHOR]

The Joint Polar Satellite System 3 (JPSS-3) and -4 (JPSS-4) Visible Infrared Imaging Radiometer Suite (VIIRS) instruments are the last in the series (S-NPP VIIRS launched in October 2011, JPSS-1 VIIRS launched in November 2017, and JPSS-2 VIIRS launched in November 2022) of highly advanced polar-orbiting environmental satellites. Both instruments underwent a comprehensive sensor-level thermal vacuum (TVAC) testing at the Raytheon Technologies El Segundo facility to characterize the spatial, spectral, and radiometric aspects of the VIIRS sensor performance. This paper focuses on the radiometric performance of the 14 reflective solar bands (RSBs) that cover the wavelength range from 0.41 to 2.3 µm. Key instrument calibration parameters such as instrument gain, signal-to-noise ratio (SNR), dynamic range, and radiometric calibration uncertainty were derived from the TVAC measurements for both the primary and redundant electronics at three instrument temperature plateaus: cold, nominal, and hot. This paper shows that all the JPSS-3 and -4 VIIRS RSB detectors have been well characterized, with key performance metrics comparable to the previous VIIRS instruments on-orbit. The radiometric calibration uncertainty of the RSBs is within the 2% requirement, except in the case of band M1 of JPSS-4. Comparison of the radiometric performance to sensor requirements, as well as a summary of key instrument testing and performance issues, is also presented. [ABSTRACT FROM AUTHOR]

Extended Abstract Background: One of the principal and challenging animal studies in population genetics is to identify the signs of selection to improve economic traits and reduce diseases. Johne's disease is an incurable chronic bacterial infection that primarily affects the lower parts of the small intestine of ruminants, although its pathology and symptoms vary among species. The economic consequences of Johne's disease include reduced production, loss of genetic value, increased sensitivity to other diseases, increased interval between calving, weight loss, reduced carcass value, reduced fertility (due to reduced serum progesterone formation and corpus luteum), decreased quality and quantity of milk (decreasing fat and protein and increasing somatic cells in milk), and premature elimination. According to the results of new research, this bacterium may be a zoonotic pathogen that plays a role in causing Crohn's disease (a chronic inflammatory bowel disease (IBD)) in humans. Even after milk pasteurization, this pathogen remains alive and is therefore a threat to the health of society. This disease is one of the main diseases economically and one of the most prevalent diseases, causing great economic damage to the livestock industry worldwide. In this study, an extensive genome-wide scan was performed using single nucleotide polymorphisms (SNPs) to identify the signs of selection between populations of Holstein cows affected by Johne's disease and healthy animals. Methods: In this study, 145 Holstein cows of the Feka cattle farm in Isfahan were genotyped based on Illumina 30K chips. Cows were grouped into two sick and healthy groups, with 45 and 100 cows, respectively. Quality control indicators included the animal read rate (mind), SNP read rate (geno), rare allele frequency (MAF), and Hardy-Weinberg equilibrium. To identify important metabolic pathways, ClueGo (version 2.5.6) was used in Cytoscape software, which provides biological interpretations of genes. In this study, two statistics, iHS and RSB, were used to identify the signs of selection. Results: Using iHS statistics, 63 and 70 genes were identified in the diseased and healthy populations of Holstein cows, respectively. The important genes identified by iHS statistics included HCN2, DOCK4, ITGA8, and STAG1 in the patient population, and CAV2, CNTNAP4, MIB1, and TTC23 in the healthy population. After examining the selected regions, 39 and 53 genes were identified in the diseased and healthy populations of Holstein cows with RSB statistics. The important genes identified by RSB statistics included GRID2, PPIP5K2, and CTNNA2 in the patient population, and DOCK1, PCDH9, and AK1 in the healthy population. Conclusion: In the present study, the results of the iHS statistics showed that 84 and 96 genomic regions were under selection in the healthy and patient populations, as well as 152 and 129 genomic regions in the healthy and patient populations using the RSB statistics. Most of the genes identified in this study were related to immunity, cancer, bacterial invasion of cells, cell aging, cell response, growth, and cell adhesion, which are among the important biological traits and characteristics of living organisms. By identifying possible candidate genes related to and resistance to Johne's disease in cattle, this information can be used in breeding programs (selection to reduce or increase the expression and frequency of important genes) for Holstein cows in Iran. However, due to the incomplete information related to the function of the genes in cattle species and the small population used in this study, more extensive studies with more samples and the analysis of several separate populations will provide a better understanding of candidate genes for Johne's disease in the cattle population.

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IntroductionIdentifying genomic regions under selection is the most challenging issue for improving important traits in animals. Few studies have focused on identifying genomic regions under selection in sheep. The aim of this study was to identify selective sweeps and to explore the relationship between these and quantitative trait loci (QTL) in both domestic and wild sheep species using single nucleotide polymorphism markers (SNPs).MethodsGenomic data were obtained from the NextGen project, which included genotyping 20 domestic and 14 wild sheep using the Illumina Ovine SNP50K BeadChip. The XP-EHH, iHS, and RSB methods were employed to detect signatures of positive selection.ResultsThe results of the iHS method indicated 405 and 275 selective sweeps in domestic and wild sheep, respectively. Additionally, RSB and XP-EHH analyses revealed approximately 398 and 479 selective sweeps in domestic and wild sheep, respectively. Some of the genes associated with important QTL traits in domestic sheep include ADGRB3, CADM1, CAPN2, GALNT10, MTR, RELN, and USP25, while in wild sheep, the relevant genes include ACAN, ACO1, GADL1, MGST3, and PRDM16. Selective sweeps identified in domestic sheep were associated with body weight, muscle weight, milk protein percentage, and milk yield. In contrast, selective sweeps found in wild sheep were linked to average daily gain, bone weight, carcass fat percentage, and dressing percentage.DiscussionThese results indicate that selection by humans and the environment have largely progressed in harmony, highlighting the importance of both economic and environmental traits for survival. Additionally, the identification of potential candidate genes associated with economic traits and genomic regions that have experienced selection can be utilized in sheep breeding programs. However, due to the incomplete information regarding the functional annotation of genes in sheep and the limited sample size, further research with a larger sample group is essential to gain a deeper understanding of the candidate genes linked to economic traits in both domestic and wild sheep. Advancing knowledge in this area can significantly enhance the effectiveness of breeding strategies. The quantitative trait loci identified in this study have the potential to be incorporated into breeding plans for both domestic and wild sheep.

This research aims to investigate the application of the hot pressing (HP) sintering process in the fabrication of W-B-Fe-Cr-C advanced shielding materials and analyze the relationship between their microstructure and mechanical properties. The findings reveal that the HP sintering process can effectively produce reactive sintered boride (RSB) materials with high density and engineering application size. The results indicate that the residual stress in RSB-HP improves its bending strength to some extent. Residual stress and granular structure are both related to phase aggregation during sintering. Microstructural analysis has unveiled the granular organizational characteristics and the pathways of crack propagation within the RSB-HP. These discoveries hold significant importance for comprehending the potential of the HP sintering process in the context of nuclear fusion shielding material preparation and provide a scientific foundation for further optimizing the sintering process and performance of RSB materials.

With the development of fusion devices towards compact designs, the space available for shielding is more limited. So high performance shielding materials are urgently needed to meet the shielding requirements. W-B-Fe-Cr-C Reactive Sintered Borides (RSB) has attracted attention as a potential advanced shielding material for fusion reactors. In this study, the hot isostatic pressing (HIP) sintering process was used to obtain uniform, dense and crack-free RSB at a temperature as low as 1250 ℃. Combined with the microstructure and phase distribution characterization, the influence of microstructure on the performance parameters was analyzed. Although the brittle phase content is higher than similar shielding material, the fracture toughness of RSB-HIP does not decrease due to crack branching, crack bridge and micro-crack toughening mechanisms. The bending strength is only 330 MPa due to the initiation of more cracks in brittle phases during the bending process. The reference and direction are provided for the optimization of preparation process of advanced shielding materials for fusion reactor.

Rice sheath blight (RSB) disease became one of the major threats to rice crops worldwide. The causal agent of RSB is the necrotrophic fungus Rhizoctonia solani. Finding appropriate management strategies to combat the disease to minimize rice yield losses and reduce global food security threats is challenging. However, scientists are still figuring out the best way to safeguard rice crops from RSB. Recently various pathogenesis-related (PR) viz. PR-3, PR-5, PR-9, PR-10, PR-12, and PR-13 and WRKY genes have been discovered in rice crops which are engaged in plant defensive responses and responsible for various biological processes, including growth, development, stress, embryogenesis, and resistance to RSB disease. Conventional fungicides are now being replaced with eco-friendly fungicides and biological agents, including mycoviruses that can effectively control RSB disease and minimize the hazardous effects of chemicals. Here, we summarize the disease cycle, symptoms, and effects of environmental variables on RSB disease development. Furthermore, recent advances in studies on the management of disease using cultural, chemical, and biological approaches including mycoviruses, transgenic approaches, gene loci/markers, gene silencing, and genome editing are also summarized. Finally, the expression of resistant-related genes in rice crops and biological agent mechanisms of action are discussed. [ABSTRACT FROM AUTHOR]

Identification of selection signatures may provide a better understanding of domestication process and candidate genes contributing to this process. In this study, two populations of domestic and wild goats from Iran were analyzed to identify selection signatures. RSB, iHS, and XP‐EHH statistics were used in order to identify robust selection signatures in the goat genome. Genotype data of domestic and wild goats from the NextGen project was used. The data was related to 18 Capra aegagrus (wild goat) and 20 Capra hircus (domestic goat) from Iran. The iHS method indicated 675 and 441 selection signatures in C. aegagrus and C. hircus, respectively. RSB and XP‐EHH methods showed about 370 and 447 selection signatures in C. aegagrus and C. hircus, respectively. These selection signatures were mainly associated with milk production, fleece trait, mammary epithelial cells, reproduction, and immune system. [ABSTRACT FROM AUTHOR]

The Visible Infrared Imaging Radiometer Suite (VIIRS) instruments on-board the Suomi National Polar-orbiting Partnership (S-NPP) and Joint Polar Satellite System (JPSS) spacecrafts 1 and 2 provides calibrated sensor data record (SDR) reflectance, radiance, and brightness temperatures for use in environment data record (EDR) products. The SDRs and EDRs are used in weather forecasting models, weather imagery and climate applications such as ocean color, sea surface temperature and active fires. The VIIRS has 22 bands covering a spectral range 0.4–12.4 µm with resolutions of 375 m and 750 m for imaging and moderate bands respectively on four focal planes. The bands are stratified into three different types based on the source of energy sensed by the bands. The reflective solar bands (RSBs) detect sunlight reflected from the Earth, thermal emissive bands (TEBs) sense emitted energy from the Earth and the day/night band (DNB) detects both solar and lunar reflected energy from the Earth. The SDR calibration uses a combination of pre-launch testing and the solar diffuser (SD), on-board calibrator blackbody (OBCBB) and space view (SV) on-orbit calibrator sources. The pre-launch testing transfers the National Institute of Standards and Technology (NIST) traceable calibration to the SD, for the RSB, and the OBCBB, for the TEB. Post-launch, the on-board calibrators track the changes in instrument response and adjust the SDR product as necessary to maintain the calibration. This paper will discuss the pre-launch radiometric calibration portion of the SDR calibration for the RSBs that includes the dynamic range, detector noise, calibration coefficients and radiometric uncertainties for JPSS-2 VIIRS. [ABSTRACT FROM AUTHOR]

The Visible Infrared Imaging Radiometer Suite (VIIRS) instruments on board both the Suomi National Polar-orbiting Partnership (S-NPP) and the first Joint Polar Satellite System (JPSS-1) spacecraft provides calibrated reflectance, radiance, and brightness temperature products for weather and climate applications. It has 22 bands with resolutions of 375 and 750 m for imaging and moderate bands, respectively, on 4 focal planes covering a spectral range of 400–12,490 nm. The bands are stratified into reflective solar bands (RSBs), thermal emissive bands (TEBs), and the Day/Night Band (DNB). VIIRS has three on-board calibration sectors: the solar diffuser (SD), on-board calibrator blackbody (OBCBB), and space view (SV). The on-board calibrator targets are used to track on-orbit degradation and background offset drift. Extensive prelaunch radiometric testing of the RSB, TEB, and DNB detector's radiometric sensitivity and noise was performed for both S-NPP and JPSS-1 VIIRS. The combination of prelaunch testing and on-orbit calibrators is used to produce calibrated sensor data record (SDR) reflectance, radiance, and brightness temperatures for use in environmental data record (EDR) products. This paper will discuss the prelaunch radiometric calibration activities for the RSBs only and includes the dynamic range, calibration coefficients, detector noise, and radiometric uncertainties for JPSS-1 VIIRS. [ABSTRACT FROM AUTHOR]

In this work we present a rigorous and straightforward method to detect the onset of the instability of replica-symmetric theories in information processing systems, which does not require a full replica analysis as in the method originally proposed by de Almeida and Thouless for spin glasses. The method is based on an expansion of the free-energy obtained within one-step of replica symmetry breaking (RSB) around the RS value. As such, it requires solely continuity and differentiability of the free-energy and it is robust to be applied broadly to systems with quenched disorder. We apply the method to the Hopfield model and to neural networks with multi-node Hebbian interactions, as case studies. In the appendices we test the method on the Sherrington–Kirkpatrick and the Ising P -spin models, recovering the AT lines known in the literature for these models, as a special limit, which corresponds to assuming that the transition from the RS to the RSB phase can be obtained by varying continuously the order parameters. Our method provides a generalization of the AT approach, which does not rely on this limit and can be applied to systems with discontinuous phase transitions, as we show explicitly for the spherical P-spin model, recovering the known RS instability line. [ABSTRACT FROM AUTHOR]

The obligate intracellular bacterial pathogen Chlamydia trachomatis is a leading cause of sexually transmitted infections and infectious blindness. Chlamydia undergo a biphasic developmental cycle alternating between the infectious elementary body (EB) and the replicative reticulate body (RB). The molecular mechanisms governing RB growth and RB-EB differentiation are unclear. We hypothesize that the bacterium senses host cell and bacterial energy levels and metabolites to ensure that development and growth coincide with nutrient availability. We predict that a partner switching mechanism (PSM) plays a key role in the sensing and response process acting as a molecular throttle sensitive to metabolite levels. Using purified wild type and mutant PSM proteins, we discovered that metal type impacts enzyme activity and the substrate specificity of RsbU and that RsbW prefers ATP over GTP as a phosphate donor. Immunoblotting analysis of RsbV1/V2 demonstrated the presence of both proteins beyond 20 hours post infection and we observed that an RsbV1-null strain has a developmental delay and exhibits differential growth attenuation in response to glucose levels. Collectively, our data support that the PSM regulates growth in response to metabolites and further defines biochemical features governing PSM-component interactions which could help in the development of novel PSM-targeted therapeutics., (© The Author(s) 2022. Published by Oxford University Press on behalf of FEMS.)