Search

Abstract EPA + DHA intake in land-locked central Europe (CE) is barely fulfilled. Imported marine fish/farmed salmonids are likely the backbone of an ailing EPA + DHA security. Supplementing with captured marine fish oil capsules (~0.5 g up to 1.6 g CO2-eq. mg EPA + DHA−1) could be comparable in GHG emissions with fish consumption itself (~1 g to as low as 0.6 g CO2-eq. mg EPA + DHA−1). But synergistic benefits of EPA + DHA intake by consuming fish protein need consideration too. Taking semi-intensive pond carp and intensively farmed salmon as models, we analyzed footprint, eco-services, and resource use efficiency perspectives of achieving EPA + DHA security in a CE region. Despite a lower production footprint, pond-farmed fish greatly lag in EPA + DHA supply (carp 101–181 mg 100 g−1 salmon 8.7 mg N), phosphorus (carp 6.8 > salmon 1.6 mg P), and climate change (carp 1.84 > salmon 0.8 g CO2-eq.). With enhancements in pond carp (>300 mg EPA + DHA 100 g−1), these differences may cease to exist. Harnessing EPA + DHA bioaccumulation pathways active in ponds, finishing feeding strategies, and polyculture, the EPA + DHA content in pond fish may be increased. Ecosystem services with EPA + DHA mining from pond food web or high EPA + DHA output-to-input ratio (pond carp 1–200 > RAS salmon 0.75) make ponds an eco-efficient system. As fish consumption in CE must improve, pond-farmed fish would be needed to complement (but not substitute) salmonid/marine fish/oil capsules consumption. Achieving EPA + DHA security with minimum pressure on the environment or global resources.

Aim. Specify the risk rate of incorrect patient classification based on the night-to-day ratio specification from singular 24-h ABPM in comparison to the results of 7-day ABPM monitoring Materials and Methods. 1197 24 h cycles were enrolled in 171 subjects in the study and divided into 4 groups: group 1 (40 healthy men and women without exercise), group 2 (40 healthy exercise-training men and women), group 3 (40 patients with ischemic coronary artery disease without exercise), and group 4 (51 patients with ischemic coronary artery disease following cardiovascular rehabilitation). The subject of the evaluation was the percentage rate of incorrect subject classification (dipper, nondipper, extreme dipper, and riser) based on the mean blood pressure values for 7 days and from seven independent 24-hour cycles (the mean value mode). Results. In the case of the individuals included in the monitored groups, the mean night-to-day ratio-based (mode for the 7 days versus the individual days of 24-hour monitoring) classification accordance ranged between 59% and 62%. Only in singular cases did the accordance reach 0% or 100%. The accordance size was not dependent on the health or cardiovascular disease (p

Abstract Speciation is a continuous process driven by genetic, geographic, and ecological barriers to gene flow. It is widely investigated in multicellular eukaryotes, yet we are only beginning to comprehend the relative importance of mechanisms driving the emergence of barriers to gene flow in microbial populations. Here, we explored the diversification of the nearly ubiquitous soil cyanobacterium Microcoleus. Our dataset consisted of 291 genomes, of which 202 strains and eight herbarium specimens were sequenced for this study. We found that Microcoleus represents a global speciation continuum of at least 12 lineages, which radiated during Eocene/Oligocene aridification and exhibit varying degrees of divergence and gene flow. The lineage divergence has been driven by selection, geographical distance, and the environment. Evidence of genetic divergence and selection was widespread across the genome, but we identified regions of exceptional differentiation containing candidate genes associated with stress response and biosynthesis of secondary metabolites.

Summary: The filamentous cyanobacterium Microcoleus is among the most important global primary producers, especially in hot and cold desert ecosystems. This taxon represents a continuum consisting of a minimum of 12 distinct species with varying levels of gene flow and divergence. The notion of a species continuum is poorly understood in most lineages but is especially challenging in cyanobacteria. Here we show that genomic diversification of the Microcoleus continuum is reflected by morphological adaptation. We compiled a dataset of morphological data from 180 cultured strains and 300 whole genome sequences, including eight herbarium specimens and the type specimen of Microcoleus. We employed a combination of phylogenomic, population genomic, and population-level morphological data analyses to delimit species boundaries. Finally, we suggest that the shape of the filament apices may have an adaptive function to environmental conditions in the soil.

The paper outlines the understanding of emergence in Ontic Structural Realism of James Ladyman (and his co-author Ross). First, the notion of emergence is explored, surveying the various distinctions associated with it (ontological vs. epistemological, diachronic vs. synchronic, weak vs. strong). It turns out that Ross and Ladyman’s notion of emergence is that of weak epistemological emergence compatible with ontic reduction. Particular notions of emergence are associated with the objection embodied in the Generalized Causal Exclusion Argument. The latter is sketched and the solution of Ross and Ladyman is presented: first, in general, the notion of weak emergence is not threatened by this objection. Causal reduction associated with it ensures that there are no competing causal explanations, so no overdetermination arises. Second, there is a peculiar feature of Ross and Ladyman’s theory; namely, there is no causation on the fundamental level, only pattern dynamism. Causation emerges only on higher levels of special sciences. Hence, there is no problem of causal overdetermination.

The paper deals with Thomas Aquinas’s (1225–1274) theory of predication. Aquinas’s numerous works contain passages devoted to the issue of how predication works, usually in various theological or philosophical contexts. Assuming Aquinas’s account of predication was sufficiently uniform in relation to essential and accidental predications, there are several distinct interpretative models of predication possible in relation to the texts. They differ in ascribing different semantic roles to the copula. The first model sees the copula as expressing inherence of a form expressed by the predicate term in the entity denoted by the subject term. The second model interprets the copula as designating identity. The third model incorporates inherence with the fact that Aquinas combines predicative and existential functions of the copula. I argue that the identity model is closest to what Aquinas has in mind when speaking about predication as opposed to extensional truth conditions.

The effect of simultaneous intercropping of winter wheat (Triticum aestivum L.) with different legumes of faba bean (Vicia faba L.), pea (Pisum sativum L.), and purple clover (Trifolium incarnatum L.) on selected production and qualitative parameters of wheat was evaluated in field trials conducted both in organic and conventional cropping systems, in comparison with pure sown wheat. Wheat intercropped with legumes achieved higher grain yield compared to pure sown wheat for an average of two years. However, in organic cultivation, the positive effect of intercropping on wheat yields was more pronounced. In addition, a strong influence of the year was noted. In 2021, in the organic cropping system, the most yielding intercropped wheat (especially with pea and bean) achieved 114-117% higher yields compared to pure sown wheat (in the previous year of 2020, it was usually only about 102-106%). In the conventional cropping system, the effect of intercropping on wheat yield was significantly weaker, and in 2021, wheat intercropped with legumes reached even lower yields than pure sown wheat in some cases. In terms of sowing methods (both in organic and conventional cropping systems), mixed sowing with individual legumes significantly exceeded the yields of wheat grown with legumes in separate, alternating rows. As regards quality parameters, wheat intercropped with legumes reached in comparison with pure sown wheat usually had higher crude protein content in wheat grain dry matter and higher values of Zeleny sedimentation.

Abstract Cyanobacteria are crucial primary producers in soil and soil crusts. However, their biodiversity in these habitats remains poorly understood, especially in the tropical and polar regions. We employed whole genome sequencing, morphology, and ecology to describe a novel cyanobacterial genus Argonema isolated from Antarctica. Extreme environments are renowned for their relatively high number of endemic species, but whether cyanobacteria are endemic or not is open to much current debate. To determine if a cyanobacterial lineage is endemic is a time consuming, elaborate, and expensive global sampling effort. Thus, we propose an approach that will help to overcome the limits of the sampling effort and better understand the global distribution of cyanobacterial clades. We employed a Sequencing Read Archive, which provides a rich source of data from thousands of environmental samples. We developed a framework for a characterization of the global distribution of any microbial species using Sequencing Read Archive. Using this approach, we found that Argonema is actually cosmopolitan in arid regions. It provides further evidence that endemic microbial taxa are likely to be much rarer than expected.

In the post-socialistic space, old, industrialised regions are not only dealing with problems with the regeneration of industrial brownfields but also with the occurrence of post-agricultural brownfields. The main objective of this paper is to identify and interpret how a successful network of cooperating actors was formed that participated in the process of transforming an agricultural brownfield into a successful rural business zone. From a methodological perspective, the article is based on the findings derived from a set of written memories with ten key actors who were involved in the redevelopment process. The studied regeneration project, which was implemented thanks to the successful cooperation of network of actors both from different hierarchical levels (local, regional and central level) and from the different sectors (public, private and non-profit sector), regenerated an area of 10.4 hectares thanks to both public and private investments of approximately CZK 240 million. Regeneration contributed to the creation of approximately 450 new jobs, and thanks to this project, the population in Třanovice also increased significantly in the transition period (1991–2021), which the studied community positively distinguishes from the shrinking urban centres and rural communities in the post-industrial neighbourhoods.

Plastic spacers create a linear and systemic weakening of the structure. The extreme loading of the structure tests the structure itself to its load-bearing limit or even locally exceeds this limit, thus revealing all its weak points, which are the spacers. Nevertheless, the influence of the spacers is not included in the design calculation of the reinforced concrete element. In addition, products intended as spacers for the placement of reinforcement do not belong to the specific families of construction products covered by a harmonized standard of European parliament regulation. For these reasons, it is not required to demonstrate any characteristics of these products. This fact allows the use of arbitrary spacers’ shapes and materials. As shown by the experiment carried out, the use of commonly used plastic liners will result in a weakening of the cross-section. The normal assessment of the ultimate or serviceability limit state is not affected by this weakening. An example of an experiment carried out where this problem was captured is the subject of this paper. With Europe’s current deteriorated safety situation, understanding the influence of spacers in blast-loaded reinforced concrete structures on structural failure is important, and it is appropriate to further address this issue. Based on this experiment, it is not possible to accurately identify the causes of the explosion cracks. In order to determine with certainty the effect of spacers on the strength of the structure under abnormal blast loadings, research needs to focus on this area. In the field experimental measurements and numerical simulations, it was found that the use of linear spacers has an effect on crack formation under the blast action of the tested slab.

The regulation of reactive oxygen species (ROS) levels in plants is ensured by mechanisms preventing their over accumulation, and by diverse antioxidants, including enzymes and nonenzymatic compounds. These are affected by redox conditions, posttranslational modifications, transcriptional and posttranscriptional modifications, Ca2+, nitric oxide (NO) and mitogen-activated protein kinase signaling pathways. Recent knowledge about protein-protein interactions (PPIs) of antioxidant enzymes advanced during last decade. The best-known examples are interactions mediated by redox buffering proteins such as thioredoxins and glutaredoxins. This review summarizes interactions of major antioxidant enzymes with regulatory and signaling proteins and their diverse functions. Such interactions are important for stability, degradation and activation of interacting partners. Moreover, PPIs of antioxidant enzymes may connect diverse metabolic processes with ROS scavenging. Proteins like receptor for activated C kinase 1 may ensure coordination of antioxidant enzymes to ensure efficient ROS regulation. Nevertheless, PPIs in antioxidant defense are understudied, and intensive research is required to define their role in complex regulation of ROS scavenging.

Aquaponics is a food production system that combines aquaculture with hydroponics. The simultaneous existence of fish, beneficial bacteria and plants in the same water loop predisposes the fish and bacteria to a possible detrimental effect of plant protection products. Additionally, there is an inadequate exploration of scientific studies on the impact of pesticides on fish and bacteria in aquaponics systems. This study investigated the effects of three commercial insecticides based on the following active ingredients: pyrethrum, azadirachtin, and spinosad, on aquaponics systems. Due to ethical concerns in animal testing, applying insecticides directly to aquaponics setup was impossible. Therefore, three separate experiments were conducted: (1) Pesticide runoff rate – in which insecticides were applied to basil (Ocimum basilicum) plants grown in two hydroponic systems: media bed and floating raft. The concentrations of applied insecticides were measured in the water of nutrient solutions of the hydroponics after 1, 3, 6, 12, 24, 36, 48, 72 and 96h to establish a pattern of degradation of insecticides. The result from this experiment showed that pyrethrum and spinosad were detected in unquantifiable concentrations in the nutrient solutions. Hence, further experiments were conducted only with azadirachtin. In a biofilter trial (2) – azadirachtin, at three concentrations (1.5 µg L-1; 7.5 µg L-1; and 15 µg L-1), was added to a running biofilter to investigate the effects on nitrifying bacteria. Mild effects were recorded in the nitrification and bacteria microbiome. In the third trial (3) – Nile tilapia (Oreochromis niloticus) were exposed to similar concentrations of azadirachtin for seven days (and the same period for recovery) to investigate effects on fish hematology, blood biochemistry, antioxidative enzymes in the brain, gills, muscle, liver and intestine and histopathology of gills and liver. Results showed mild effects in hematology and biochemistry profile in fish and higher levels of lipid peroxidation in the liver during the exposure. The results indicate a safe use of pyrethrum and spinosad in aquaponics setup, while azadirachtin has to be used with care, especially in coupled aquaponics systems.

The sympatric occurrence of closely related lineages displaying conserved morphological and ecological traits is often characteristic of free-living microbes. Gene flow, recombination, selection, and mutations govern the genetic variability between these cryptic lineages and drive their differentiation. However, sequencing conservative molecular markers (e.g., 16S rRNA) coupled with insufficient population-level sampling hindered the study of intra-species genetic diversity and speciation in cyanobacteria. We used phylogenomics and a population genomic approach to investigate the extent of local genomic diversity and the mechanisms underlying sympatric speciation of Laspinema thermale. We found two cryptic lineages of Laspinema. The lineages were highly genetically diverse, with recombination occurring more frequently within than between them. That suggests the existence of a barrier to gene flow, which further maintains divergence. Genomic regions of high population differentiation harbored genes associated with possible adaptations to high/low light conditions and stress stimuli, although with a weak diversifying selection. Overall, the diversification of Laspinema species might have been affected by both genomic and ecological processes.

Iron superoxide dismutase 1 (FSD1) was recently characterized as a plastidial, cytoplasmic, and nuclear enzyme with osmoprotective and antioxidant functions. However, the current knowledge on its role in oxidative stress tolerance is ambiguous. Here, we characterized the role of FSD1 in response to methyl viologen (MV)-induced oxidative stress in Arabidopsis thaliana. In accordance with the known regulation of FSD1 expression, abundance, and activity, the findings demonstrated that the antioxidant function of FSD1 depends on the availability of Cu2+ in growth media. Arabidopsis fsd1 mutants showed lower capacity to decompose superoxide at low Cu2+ concentrations in the medium. Prolonged exposure to MV led to reduced ascorbate levels and higher protein carbonylation in fsd1 mutants and transgenic plants lacking a plastid FSD1 pool as compared to the wild type. MV induced a rapid increase in FSD1 activity, followed by a decrease after 4 h long exposure. Genetic disruption of FSD1 negatively affected the hydrogen peroxide-decomposing ascorbate peroxidase in fsd1 mutants. Chloroplastic localization of FSD1 is crucial to maintain redox homeostasis. Proteomic analysis showed that the sensitivity of fsd1 mutants to MV coincided with decreased abundances of ferredoxin and photosystem II light-harvesting complex proteins. These mutants have higher levels of chloroplastic proteases indicating an altered protein turnover in chloroplasts. Moreover, FSD1 disruption affects the abundance of proteins involved in the defense response. Collectively, the study provides evidence for the conditional antioxidative function of FSD1 and its possible role in signaling.

The reliability of numerical simulations of the structural response of nonhomogeneous materials to high velocity loadings is highly dependent on the used material model and parameters. For nonhomogeneous materials, such as fibres, reinforced concrete is widely used for the Winfrith model, but the question of appropriate material parameters for Ultra-High Performance Fibre Reinforcement Concrete (UHPFRC) under high velocity loadings is still open. The article deals with possible method of inverse identification of material parameters of a UHPFRC slab under blast loading for a Winfrith material model. Possible application is in the field of numerical simulation of protective or critical infrastructure response to blast loading. Experimental measurement of the time–deflection curve through laser scanning using the triangulation method gave us input data for an inverse identification phase conducted in Optislang software. Obtained material parameters from a given range are optimized for blast loading and their Pearson’s correlation coefficient provides us information about their significance for simulation.

Drivers of the speciation in bacteria, including geographical isolation and horizontal gene transfer, are still poorly understood. Here, we characterized a new lineage within an anciently diverged thermophilic cyanobacteria. We sequenced the whole genome of a strain Thermostichus vulcanus isolated from the Rupite spring (Bulgaria), which is closely related to Theromstichus strains JA-2-3Aa and JA-2-3B′a(2-13). We performed phylogenetic inference, horizontal gene transfer estimation, and CRISPR/Cas system characterization. We found that the Rupite strain is a distinct species from strains JA-2-3Aa, and JA-2-3B′a(2-13). Furthermore, the horizontal gene transfer seemed to be more frequent among the geographically distant species than between the two species within the same hot spring. The CRISPR/Cas system had variable complexity among the species of Thermostichus in terms of both the number of spacers and genes. The Rupite strain had the highest, and JA-2-3Aa the lowest number of spacers among the analyzed strains, and the CRISPR spacers were only rarely shared among the strains. We conclude that the CRISPR/Cas system size varied among the lineages as well as the gene flow.

Anaerobic digestion (AD) plants undoubtedly represent an integral and irreplaceable element in rural energy transition and sustainable waste management. In our study, we focus on an advanced understanding of the dynamics behind the changing perceptions of AD plants in host communities in Poland, Slovakia, and the Czech Republic. The surveyed AD plant case studies were selected to represent best-practice examples of AD plant operations in their countries. By means of a comparative survey in three host communities, we seek to learn more about the shift in perceptions of AD plants between their planning and operational phases. We find that, although our cases are considered best-practice examples of AD plant operations, their overall support in their communities dramatically dropped in the operational phase consequent to real-life experience with living in the neighbourhood of an AD plant. Additionally, our findings indicate that respondents who reported the most severe deterioration of AD plant perceptions were, surprisingly, those who had participated in the planning process more than other respondents. The most frequently mentioned type of participation in the planning phase was reported to be visits to the local administration office to inspect an AD plant’s planning documentation. We argue that deteriorating perceptions of best-practice examples of AD plant operations negatively impact the further development and acceptance of the biogas sector in Eastern Europe. The element of acceptance by the locals of AD plant operations urgently requires reflection in the definition of best practices to inspire and upgrade both existing and planned biogas energy projects.