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The importance of cereals and pulses in the diet is widely recognized, and consumers are seeking for ways to balance their diet with plant-based options. However, the presence of antinutritional factors reduces their nutritional value by decreasing the bioavailability of proteins and minerals. This study’s aim was to select microbes and fermentation conditions to affect the nutritional value, taste, and safety of products. Single lactic acid bacteria (LAB) strains that reduce the levels of antinutrients in faba bean and pea were utilized in the selection of microbes for two starter mixtures. They were studied in fermentations of a faba bean–oat mixture at two temperatures for 24, 48, and 72 h. The levels of antinutrients, including galacto-oligosaccharides and pyrimidine glycosides (vicine and convicine), were determined. Furthermore, a sensory evaluation of the fermented product was conducted. Fermentations with selected single strains and microbial mixtures showed a significant reduction in the content of antinutrients, and vicine and convicine decreased by up to 99.7% and 96.1%, respectively. Similarly, the oligosaccharides were almost completely degraded. Selected LAB mixtures were also shown to affect the product’s sensory characteristics. Microbial consortia were shown to perform effectively in the fermentation of protein-rich materials, resulting in products with improved nutritional value and organoleptic properties.

At the same time as the strong ambition to improve sustainability and the healthiness of food systems through a transition towards a more plant-based diet, climate change is increasing the risk of plant diseases. Consequently, mycotoxigenic fungi have become a food safety issue of major importance. A variety of strategies to suppress fungal growth in the pre- and postharvest stages of plant production have been established, and the potential of various biological methods has been assessed to ensure food safety. Of the various food microbes, lactic acid bacteria are known for their capacity to suppress the growth of toxigenic fungi and adsorb free mycotoxins. The current study showed that lactic acid fermentation could mitigate aflatoxin risk in plant-based foods through a reduction in free aflatoxin B1. In line with previous studies, in which Lactiplantibacillus plantarum (formerly Lactobacillus plantarum) was shown to reduce the level of free aflatoxin B1 in vitro, L. plantarum was shown to achieve up to a 90% reduction in free aflatoxin B1 in food fermentation. The results showed that traditional lactic acid fermentation, using L. plantarum as the starter strain, could be applied to mitigate aflatoxin B1 contamination risk in proteinaceous plant-based foodstuffs. In a wider context, fermentation using selected strains of lactic acid bacteria as starters could also enhance the availability of nutritious and safer food in terms of mycotoxin risk in low-income countries.