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Between 2018 and 2021, AIMS and its partners conducted a large-scale experiment to investigate the effect of exposure to a 3D seismic survey on pearl oysters. In August 2018, ≈11 000 adult wild silverlip pearl oysters (Pinctada maxima) were collected and attached to bottom culture lines to acclimatise for 1 month at a holding lease site, 40 km off Broome, WA. These oysters were split across rows configured parallel to each other at seven horizontal distances up to 6000 m from a ‘zero line’. In September 2018, we sailed a commercial seismic vessel along one 20 km-long inactive (vessel control) sail line along the zero line, followed by six operational (exposure) sail lines, at increasing distances from the zero line, with each line separated in time by either 12 or 24 h. This design resulted in groups of pearl oysters with 35 different exposure histories (seven distances, five exposure distances) that were then transferred to undergo either lethal biophysical sampling or pearl seeding for a ‘grow-out’ study of pearl production. Biophysical sampling included immunology tests, primarily using flow cytometry and gene expression changes in nacre- and stress-associated genes. Audits of oyster growth and condition were conducted at various time points between the exposure period and harvesting of the seeded oysters. The number and quality of pearls produced by each exposure group was assessed 2 years after exposure (December 2020). The results of these analyses are being finalised for presentation.

Integrated analysis of the vertical and horizontal movements of epipelagic fishes requires high-resolution data from tags that have been attached to animals for long periods. The recovery of a SPLASH tag deployed on a whale shark Rhincodon typus for 3 mo enabled access to archival data of horizontal and vertical movements of the shark that travelled 5380 km from Christmas Island to the Banda Sea. We examined water temperature and bathymetry to compare movements of the shark with key oceanographic features. Over 89 d, we identified 1931 dives and grouped these into 5 broad categories depending on dive shape. To investigate the potential for these dives to reflect behavioural thermoregulation, we used boosted regression trees to model the relationship between pre- and post-dive surface durations and dive characteristics. The movements of the shark were correlated with water temperatures, with the animal following frontal systems while remaining in a sea surface temperature (SST) range of 24-29°C. Across the continental shelf off north-western Australia, the shark mostly remained near the seafloor, likely avoiding very warm SSTs and strong currents at the surface. U- (foraging) and V- (searching) shaped dives accounted for ~78% of dives. Foraging dives during the day descended to 200-500 m and were preceded and followed by extended periods at the surface, whereas at night, the shark rarely dived below 200 m, likely foraging near the thermocline. Our results show how water temperatures influence the movement of this whale shark, with ‘basking’ at the surface during the day likely to gather environmental heat for thermoregulation, aiding to maintain body temperatures.

20 pages, 3 tables, 5 figures.-- Samantha Andrzejaczek ... et al.-- Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC), Knowledge of the three-dimensional movement patterns of elasmobranchs is vital to understand their ecological roles and exposure to anthropogenic pressures. To date, comparative studies among species at global scales have mostly focused on horizontal movements. Our study addresses the knowledge gap of vertical movements by compiling the first global synthesis of vertical habitat use by elasmobranchs from data obtained by deployment of 989 biotelemetry tags on 38 elasmobranch species. Elasmobranchs displayed high intra- and interspecific variability in vertical movement patterns. Substantial vertical overlap was observed for many epipelagic elasmobranchs, indicating an increased likelihood to display spatial overlap, biologically interact, and share similar risk to anthropogenic threats that vary on a vertical gradient. We highlight the critical next steps toward incorporating vertical movement into global management and monitoring strategies for elasmobranchs, emphasizing the need to address geographic and taxonomic biases in deployments and to concurrently consider both horizontal and vertical movements, Data analysis was funded by the Bertarelli Foundation through the Marine Science program through grants to D.J.C., B.A.B., and S.A. D.J.C. is also funded through Research England, UK. S.A. and B.A.B. thank the Moore Foundation and the Packard Foundation. F.G.-M. thanks the Instituto Politecnico Nacional for fellowships (COFAA, EDI). S.B.W. thanks funding from the Darwin Initiative (DPLUS046). A.D.M.D. acknowledges funding from the Research and Conservation Budget at Georgia Aquarium, including philanthropic gifts from several anonymous donors. K.F. acknowledges funding from the Rolex Awards for Enterprise and the Whitley Fund for Nature

Presented on Wednesday 18 May: Session 15 Between 2018 and 2021, AIMS and its partners conducted a large-scale experiment to investigate the effect of exposure to a 3D seismic survey on pearl oysters. In August 2018, ≈11 000 adult wild silverlip pearl oysters (Pinctada maxima) were collected and attached to bottom culture lines to acclimatise for 1 month at a holding lease site, 40 km off Broome, WA. These oysters were split across rows configured parallel to each other at seven horizontal distances up to 6000 m from a ‘zero line’. In September 2018, we sailed a commercial seismic vessel along one 20 km-long inactive (vessel control) sail line along the zero line, followed by six operational (exposure) sail lines, at increasing distances from the zero line, with each line separated in time by either 12 or 24 h. This design resulted in groups of pearl oysters with 35 different exposure histories (seven distances, five exposure distances) that were then transferred to undergo either lethal biophysical sampling or pearl seeding for a ‘grow-out’ study of pearl production. Biophysical sampling included immunology tests, primarily using flow cytometry and gene expression changes in nacre- and stress-associated genes. Audits of oyster growth and condition were conducted at various time points between the exposure period and harvesting of the seeded oysters. The number and quality of pearls produced by each exposure group was assessed 2 years after exposure (December 2020). The results of these analyses are being finalised for presentation. To access the presentation click the link on the right. To read the full paper click here

Marine traffic is increasing globally yet collisions with endangered megafauna such as whales, sea turtles, and planktivorous sharks go largely undetected or unreported. Collisions leading to mortality can have population-level consequences for endangered species. Hence, identifying simultaneous space use of megafauna and shipping throughout ranges may reveal as-yet-unknown spatial targets requiring conservation. However, global studies tracking megafauna and shipping occurrences are lacking. Here we combine satellite-tracked movements of the whale shark, Rhincodon typus, and vessel activity to show that 92% of sharks’ horizontal space use and nearly 50% of vertical space use overlap with persistent large vessel (>300 gross tons) traffic. Collision-risk estimates correlated with reported whale shark mortality from ship strikes, indicating higher mortality in areas with greatest overlap. Hotspots of potential collision risk were evident in all major oceans, predominantly from overlap with cargo and tanker vessels, and were concentrated in gulf regions, where dense traffic co-occurred with seasonal shark movements. Nearly a third of whale shark hotspots overlapped with the highest collision-risk areas, with the last known locations of tracked sharks coinciding with busier shipping routes more often than expected. Depth-recording tags provided evidence for sinking, likely dead, whale sharks, suggesting substantial “cryptic” lethal ship strikes are possible, which could explain why whale shark population declines continue despite international protection and low fishing-induced mortality. Mitigation measures to reduce ship-strike risk should be considered to conserve this species and other ocean giants that are likely experiencing similar impacts from growing global vessel traffic., [Significance] Global vessel traffic is increasing alongside world economic growth. The potential for rising lethal ship strikes on endangered species of marine megafauna, such as the plankton-feeding whale shark, remains poorly understood since areas of highest overlap are seldom determined across an entire species range. Here we show how satellite tracking whale sharks and large vessel movements globally provides a means to localize high-overlap areas and to determine how collision risk changes in time. Our results point to potential high levels of undetected or unreported ship strikes, which may explain why whale shark populations continue to decline despite protection and low fishing-induced mortality. Collision mitigations in high-collision-risk areas appear necessary to help conserve this iconic species., Funding for data analysis was provided by the UK Natural Environment Research Council (NERC) through a University of Southampton INSPIRE DTP PhD Studentship to F.C.W. Additional funding for data analysis was provided by NERC Discovery Science (NE/R00997/X/1) and the European Research Council (ERC-AdG-2019 883583 OCEAN DEOXYFISH) to D.W.S., Fundação para a Ciência e a Tecnologia (FCT) under PTDC/BIA/28855/2017 and COMPETE POCI-01–0145-FEDER-028855, and MARINFO–NORTE-01–0145-FEDER-000031 (funded by Norte Portugal Regional Operational Program [NORTE2020] under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund–ERDF) to N.Q. FCT also supported N.Q. (CEECIND/02857/2018) and M.V. (PTDC/BIA-COM/28855/2017). D.W.S. was supported by a Marine Biological Association Senior Research Fellowship.

Population genetic data can provide valuable information on the demography of a species. For rare and elusive marine megafauna, samples for generating the data are traditionally obtained from tissue biopsies, which can be logistically difficult and expensive to collect and require invasive sampling techniques. Analysis of environmental DNA (eDNA) offers an alternative, minimally invasive approach to provide important genetic information. Although eDNA approaches have been studied extensively for species detection and biodiversity monitoring in metabarcoding studies, the potential for the technique to address population-level questions remains largely unexplored. Here, we applied “eDNA haplotyping” to obtain estimates of the intraspecific genetic diversity of a whale shark (Rhincodon typus) aggregation at Ningaloo reef, Australia. Over 2 weeks, we collected seawater samples directly behind individual sharks prior to taking a tissue biopsy sample from the same animal. Our data showed a 100% match between mtDNA sequences recovered in the eDNA and tissue sample for all 28 individuals sampled. In the seawater samples, >97% of all reads were assigned to six dominant haplotypes, and a clear dominant signal (~99% of sample reads) was recovered in each sample. Our study demonstrates accurate individual-level haplotyping from seawater eDNA. When DNA from one individual clearly dominates each eDNA sample, it provides many of the same opportunities for population genetic analyses as a tissue sample, potentially removing the need for tissue sampling. Our results show that eDNA approaches for population-level analyses have the potential to supply critical demographic data for the conservation and management of marine megafauna.