12 results on '"Manzano H."'
Search Results
2. 383P An exosome-based liquid biopsy assay for predicting therapeutic outcomes in patients with metastatic colorectal cancer treated with anti-EGFR therapy: Results from prospective, first-line, PULSE and POSIBA trials
- Author
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Goel, A., primary, Xu, C., additional, Roy, S., additional, Esposito, F.M., additional, Helena, O., additional, Alonso, V., additional, Yubero Esteban, A., additional, Carlos, F-M., additional, Salud Salvia, M.A., additional, Gallego Plazas, J., additional, Rodriguez Monwbray, J.R., additional, Marta, M.M-R., additional, Fernandez, J., additional, Manzano, H., additional, Aparicio, J., additional, Feliu, J., additional, and Maurel, J., additional
- Published
- 2022
- Full Text
- View/download PDF
3. Exploring mechanisms of hydration and carbonation of MgO and Mg(OH)₂ in reactive magnesium oxide-based cements
- Author
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Gardeh, M. G. (Mina Ghane), Kistanov, A. A. (Andrey A.), Nguyen, H. (Hoang), Manzano, H. (Hegoi), Cao, W. (Wei), Kinnunen, P. (Päivö), Gardeh, M. G. (Mina Ghane), Kistanov, A. A. (Andrey A.), Nguyen, H. (Hoang), Manzano, H. (Hegoi), Cao, W. (Wei), and Kinnunen, P. (Päivö)
- Abstract
Reactive magnesium oxide (MgO)-based cement (RMC) can play a key role in carbon capture processes. However, knowledge on the driving forces that control the degree of carbonation and hydration and rate of reactions in this system remains limited. In this work, density functional theory-based simulations are used to investigate the physical nature of the reactions taking place during the fabrication of RMCs under ambient conditions. Parametric indicators such as adsorption energies, charge transfer, electron localization function, adsorption/dissociation energy barriers, and the mechanisms of interaction of H₂O and CO₂ molecules with MgO and brucite (Mg(OH)₂) clusters are considered. The following hydration and carbonation interactions relevant to RMCs are evaluated: (i) carbonation of MgO, (ii) hydration of MgO, carbonation of hydrated MgO, (iii) carbonation of Mg(OH)₂, (iv) hydration of Mg(OH)₂, and (v) hydration of carbonated Mg(OH)₂. A comparison of the energy barriers and reaction pathways of these mechanisms shows that the carbonation of MgO is hindered by the presence of H₂O molecules, while the carbonation of Mg(OH)₂ is hindered by the formation of initial carbonate and hydrate layers as well as presence of excessed H₂O molecules. To compare these finding to bulk mineral surfaces, the interactions of the CO₂ and H₂O molecules with the MgO(001) and Mg(OH)₂ (001) surfaces are studied. Therefore, this work presents deep insights into the physical nature of the reactions and the mechanisms involved in hydrated magnesium carbonates production that can be beneficial for its development.
- Published
- 2022
4. Exploring the Polymorphism of Dicalcium Silicates Using Transfer Learning Enhanced Machine Learning Atomic Potentials.
- Author
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López-Zorrilla J, Aretxabaleta XM, and Manzano H
- Abstract
Belitic cements are a greener alternative to Ordinary Portland Cement due to the lower CO
2 associated with their production. However, their low reactivity with water is currently a drawback, resulting in longer setting times. In this study, we utilize a combination of evolutionary algorithms and machine learning atomic potentials (MLPs) to identify previously unreported belite polymorphs that may exhibit higher hydraulic reactivity than the known phases. To address the high computational demand of this methodology, we propose a novel transfer learning approach for generating MLPs. First, the models are pretrained on a large set of classical data (ReaxFF) and then retrained with density functional theory (DFT) data. We demonstrate that the transfer learning enhanced potentials exhibit higher accuracy, require less training data, and are more transferable than those trained exclusively on DFT data. The generated machine learning potential enables a fast, exhaustive, and reliable exploration of the dicalcium silicate polymorphs. This includes studying their stability through phonon analysis and calculating their structural and elastic properties. Overall, we identify ten new belite polymorphs within the energy range of the existing ones, including a layered phase with potentially high reactivity.- Published
- 2024
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5. The initial stages of cement hydration at the molecular level.
- Author
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Xu X, Qi C, Aretxabaleta XM, Ma C, Spagnoli D, and Manzano H
- Abstract
Cement hydration is crucial for the strength development of cement-based materials; however, the mechanism that underlies this complex reaction remains poorly understood at the molecular level. An in-depth understanding of cement hydration is required for the development of environmentally friendly cement and consequently the reduction of carbon emissions in the cement industry. Here, we use molecular dynamics simulations with a reactive force field to investigate the initial hydration processes of tricalcium silicate (C
3 S) and dicalcium silicate (C2 S) up to 40 ns. Our simulations provide theoretical support for the rapid initial hydration of C3 S compared to C2 S at the molecular level. The dissolution pathways of calcium ions in C3 S and C2 S are revealed, showing that, two dissolution processes are required for the complete dissolution of calcium ions in C3 S. Our findings promote the understanding of the calcium dissolution stage and serve as a valuable reference for the investigation of the initial cement hydration., (© 2024. The Author(s).)- Published
- 2024
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6. Multi-step nucleation pathway of C-S-H during cement hydration from atomistic simulations.
- Author
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Aretxabaleta XM, López-Zorrilla J, Etxebarria I, and Manzano H
- Abstract
The Calcium Silicate Hydrate (C-S-H) nucleation is a crucial step during cement hydration and determines to a great extent the rheology, microstructure, and properties of the cement paste. Recent evidence indicates that the C-S-H nucleation involves at least two steps, yet the underlying atomic scale mechanism, the nature of the primary particles and their stability, or how they merge/aggregate to form larger structures is unknown. In this work, we use atomistic simulation methods, specifically DFT, evolutionary algorithms (EA), and Molecular Dynamics (MD), to investigate the structure and formation of C-S-H primary particles (PPs) from the ions in solution, and then discuss a possible formation pathway for the C-S-H nucleation. Our simulations indicate that even for small sizes the most stable clusters encode C-S-H structural motifs, and we identified a C
4 S4 H2 cluster candidate to be the C-S-H basic building block. We suggest a formation path in which small clusters formed by silicate dimers merge into large elongated aggregates. Upon dehydration, the C-S-H basic building blocks can be formed within the aggregates, and eventually crystallize., (© 2023. The Author(s).)- Published
- 2023
- Full Text
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7. Synergistic theoretical and experimental study on the ion dynamics of bis(trifluoromethanesulfonyl)imide-based alkali metal salts for solid polymer electrolytes.
- Author
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Fortuin BA, Otegi J, López Del Amo JM, Peña SR, Meabe L, Manzano H, Martínez-Ibañez M, and Carrasco J
- Abstract
Model validation of a well-known class of solid polymer electrolyte (SPE) is utilized to predict the ionic structure and ion dynamics of alternative alkali metal ions, leading to advancements in Na-, K-, and Cs-based SPEs for solid-state alkali metal batteries. A comprehensive study based on molecular dynamics (MD) is conducted to simulate ion coordination and the ion transport properties of poly(ethylene oxide) (PEO) with lithium bis(trifluoromethanesulfonyl)imide (LiTFSI) salt across various LiTFSI concentrations. Through validation of the MD simulation results with experimental techniques, we gain a deeper understanding of the ionic structure and dynamics in the PEO/LiTFSI system. This computational approach is then extended to predict ion coordination and transport properties of alternative alkali metal ions. The ionic structure in PEO/LiTFSI is significantly influenced by the LiTFSI concentration, resulting in different lithium-ion transport mechanisms for highly concentrated or diluted systems. Substituting lithium with sodium, potassium, and cesium reveals a weaker cation-PEO coordination for the larger cesium-ion. However, sodium-ion based SPEs exhibit the highest cation transport number, indicating the crucial interplay between salt dissociation and cation-PEO coordination for achieving optimal performance in alkali metal SPEs.
- Published
- 2023
- Full Text
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8. ænet-PyTorch: A GPU-supported implementation for machine learning atomic potentials training.
- Author
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López-Zorrilla J, Aretxabaleta XM, Yeu IW, Etxebarria I, Manzano H, and Artrith N
- Abstract
In this work, we present ænet-PyTorch, a PyTorch-based implementation for training artificial neural network-based machine learning interatomic potentials. Developed as an extension of the atomic energy network (ænet), ænet-PyTorch provides access to all the tools included in ænet for the application and usage of the potentials. The package has been designed as an alternative to the internal training capabilities of ænet, leveraging the power of graphic processing units to facilitate direct training on forces in addition to energies. This leads to a substantial reduction of the training time by one to two orders of magnitude compared to the central processing unit implementation, enabling direct training on forces for systems beyond small molecules. Here, we demonstrate the main features of ænet-PyTorch and show its performance on open databases. Our results show that training on all the force information within a dataset is not necessary, and including between 10% and 20% of the force information is sufficient to achieve optimally accurate interatomic potentials with the least computational resources., (© 2023 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).)
- Published
- 2023
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9. Molecular-Level Insight into Charge Carrier Transport and Speciation in Solid Polymer Electrolytes by Chemically Tuning Both Polymer and Lithium Salt.
- Author
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Fortuin BA, Meabe L, Peña SR, Zhang Y, Qiao L, Etxabe J, Garcia L, Manzano H, Armand M, Martínez-Ibañez M, and Carrasco J
- Abstract
The advent of Li-metal batteries has seen progress toward studies focused on the chemical modification of solid polymer electrolytes, involving tuning either polymer or Li salt properties to enhance the overall cell performance. This study encompasses chemically modifying simultaneously both polymer matrix and lithium salt by assessing ion coordination environments, ion transport mechanisms, and molecular speciation. First, commercially used lithium bis(trifluoromethanesulfonyl)imide (LiTFSI) salt is taken as a reference, where F atoms become partially substituted by one or two H atoms in the -CF
3 moieties of LiTFSI. These substitutions lead to the formation of lithium(difluoromethanesulfonyl)(trifluoromethanesulfonyl)imide (LiDFTFSI) and lithium bis(difluoromethanesulfonyl)imide (LiDFSI) salts. Both lithium salts promote anion immobilization and increase the lithium transference number. Second, we show that exchanging archetypal poly(ethylene oxide) (PEO) with poly(ε-caprolactone) (PCL) significantly changes charge carrier speciation. Studying the ionic structures of these polymer/Li salt combinations (LiTFSI, LiDFTFSI or LiDFSI with PEO or PCL) by combining molecular dynamics simulations and a range of experimental techniques, we provide atomistic insights to understand the solvation structure and synergistic effects that impact macroscopic properties, such as Li+ conductivity and transference number., Competing Interests: The authors declare no competing financial interest., (© 2023 The Authors. Published by American Chemical Society.)- Published
- 2023
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10. Co-design of a Community-based Rehabilitation Program to Decrease Musculoskeletal Disabilities in a Mayan-Yucateco Municipality.
- Author
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Villarreal-Jimenez E, Lores-Peniche JA, Pelaez-Ballestas I, Cruz-Martín G, Flores-Aguilar D, García H, Gutiérrez AV, Ayora-Manzano H, López K, and Loyola-Sanchez A
- Subjects
- Humans, Decision Making, Shared, Health Promotion, Mexico, Community-Based Participatory Research, Anthropology, Cultural
- Abstract
Background: Chronic musculoskeletal (MSK) diseases are an important cause of disability in the Mayan community of Chankom in Yucatán, Mexico., Objective: To understand a community-based participatory research (CBPR) strategy implemented in Chankom to design a community-based rehabilitation (CBR) program for people living with MSK diseases., Methods: Qualitative descriptive thematic analysis from an ethnographic work conducted in Chankom, during the implementation of a CBPR strategy from 2014 to 2017., Results: Four main themes describe the main processes that formed our CBPR strategy: 1) forming and maintaining an alliance between academic and community members, 2) prioritizing community needs, 3) integrating local and global knowledge and 4) shared-decision-making. This CBPR strategy allowed the design of a CBR program formed by six main interventions: 1) health services coordination, 2) personal support, 3) community venous blood sampling services, 4) community specialized services, 5) health promotion, and 6) health transportation services., Conclusions: Co-designing a CBR program for people living with chronic MSK diseases in Chankom was possible through an extensive community engagement work structured around four main processes, including the essential principles of CBPR. The designed CBR program includes culturally sensitive interventions aimed at improving the quality, availability, accessibility, and acceptability of health care services. Moreover, the program mainly addressed the "health" component of the World Health Organization-CBR matrix, suggesting a need for a new CBPR cycle after it is implemented and evaluated in the future.
- Published
- 2023
11. Anion π-π Stacking for Improved Lithium Transport in Polymer Electrolytes.
- Author
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Qiao L, Rodriguez Peña S, Martínez-Ibañez M, Santiago A, Aldalur I, Lobato E, Sanchez-Diez E, Zhang Y, Manzano H, Zhu H, Forsyth M, Armand M, Carrasco J, and Zhang H
- Abstract
Polymer electrolytes (PEs) with excellent flexibility, processability, and good contact with lithium metal (Li°) anodes have attracted substantial attention in both academic and industrial settings. However, conventional poly(ethylene oxide) (PEO)-based PEs suffer from a low lithium-ion transference number ( T
Li + ), leading to a notorious concentration gradient and internal cell polarization. Here, we report two kinds of highly lithium-ion conductive and solvent-free PEs using the benzene-based lithium salts, lithium (benzenesulfonyl)(trifluoromethanesulfonyl)imide (LiBTFSI) and lithium (2,4,6-triisopropylbenzenesulfonyl)(trifluoromethanesulfonyl)imide (LiTPBTFSI), which show significantly improved TLi + and selective lithium-ion conductivity. Using molecular dynamics simulations, we pinpoint the strong π-π stacking interaction between pairs of benzene-based anions as the cause of this improvement. In addition, we show that Li°∥Li° and Li°∥LiFePO4 cells with the LiBTFSI/PEO electrolytes present enhanced cycling performance. By considering π-π stacking interactions as a new molecular-level design route of salts for electrolyte, this work provides an efficient and facile novel strategy for attaining highly selective lithium-ion conductive PEs.- Published
- 2022
- Full Text
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12. Exploring Mechanisms of Hydration and Carbonation of MgO and Mg(OH) 2 in Reactive Magnesium Oxide-Based Cements.
- Author
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Gardeh MG, Kistanov AA, Nguyen H, Manzano H, Cao W, and Kinnunen P
- Abstract
Reactive magnesium oxide (MgO)-based cement (RMC) can play a key role in carbon capture processes. However, knowledge on the driving forces that control the degree of carbonation and hydration and rate of reactions in this system remains limited. In this work, density functional theory-based simulations are used to investigate the physical nature of the reactions taking place during the fabrication of RMCs under ambient conditions. Parametric indicators such as adsorption energies, charge transfer, electron localization function, adsorption/dissociation energy barriers, and the mechanisms of interaction of H
2 O and CO2 molecules with MgO and brucite (Mg(OH)2 ) clusters are considered. The following hydration and carbonation interactions relevant to RMCs are evaluated: (i) carbonation of MgO, (ii) hydration of MgO, carbonation of hydrated MgO, (iii) carbonation of Mg(OH)2 , (iv) hydration of Mg(OH)2 , and (v) hydration of carbonated Mg(OH)2 . A comparison of the energy barriers and reaction pathways of these mechanisms shows that the carbonation of MgO is hindered by the presence of H2 O molecules, while the carbonation of Mg(OH)2 is hindered by the formation of initial carbonate and hydrate layers as well as presence of excessed H2 O molecules. To compare these finding to bulk mineral surfaces, the interactions of the CO2 and H2 O molecules with the MgO(001) and Mg(OH)2 (001) surfaces are studied. Therefore, this work presents deep insights into the physical nature of the reactions and the mechanisms involved in hydrated magnesium carbonates production that can be beneficial for its development., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)- Published
- 2022
- Full Text
- View/download PDF
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