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Messenger RNA (mRNA) vaccines represent a groundbreaking advancement in immunology and public health, particularly highlighted by their role in combating the COVID-19 pandemic. Optimizing mRNA-based antigen expression is a crucial focus in this emerging industry. We have developed a bioinformatics tool named AntigenBoost to address the challenge posed by destabilizing dipeptides that hinder ribosomal translation. AntigenBoost identifies these dipeptides within specific antigens and provides a range of potential amino acid substitution strategies using a two-dimensional scoring system. Through a combination of bioinformatics analysis and experimental validation, we significantly enhanced the in vitro expression of mRNA-derived Respiratory Syncytial Virus fusion glycoprotein and Influenza A Hemagglutinin antigen. Notably, a single amino acid substitution improved the immune response in mice, underscoring the effectiveness of AntigenBoost in mRNA vaccine design., (© The Author(s) 2024. Published by Oxford University Press.)

In many fields, accurate prediction of cascade outbreaks during their early stages of propagation is of paramount importance. Based on percolation theory, we propose a global propagation probability algorithm that effectively estimates the probability of information spreading from source nodes to the giant component. Building on this, we further introduce an early prediction method for cascade outbreaks, which provides quantitative predictions of both the probability and scope of cascade outbreaks by fully considering the network structure data and propagation dynamics. Through our research, we observe that cascade outbreaks resemble a phase transition. When approaching the critical point of an outbreak, a few specific activating nodes typically facilitate the transmission of information throughout the entire network, thus enabling early inference of a cascading outbreak. To validate our findings, we conducted experiments on diverse network structures using a classical propagation model and applied our proposed method to analyze a real microblog cascade dataset. The experimental results robustly demonstrate the superiority of our approach over baseline methods in terms of effectively predicting cascade outbreaks with high precision and early detection capability., (© 2024 Author(s).)