21 results on '"Krul, Cyrille"'
Search Results
2. Report of the First ONTOX Hackathon: Hack to Save Lives and Avoid Animal Suffering. The Use of Artificial Intelligence in Toxicology — A Potential Driver for Reducing/Replacing Laboratory Animals in the Future.
- Author
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Diemar, Michael G., Krul, Cyrille A.M., Teunis, Marc, Busquet, Francois, Kandarova, Helena, Zajac, Julia D., Vinken, Mathieu, and Roggen, Erwin L.
- Published
- 2025
- Full Text
- View/download PDF
3. How to optimize communication about animal and animal-free research methods
- Author
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Homberg, Judith Regina, primary, Piersma, Aldert H., additional, Krul, Cyrille A. M., additional, Genzel, Lisa, additional, Kienhuis, Anne, additional, ter Gast, Ellen, additional, and Wolvekamp, Monique, additional
- Published
- 2024
- Full Text
- View/download PDF
4. How to optimize communication about animal and animal-free research methods
- Author
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Homberg, Judith Regina, Piersma, Aldert H., Krul, Cyrille A.M., Genzel, Lisa, Kienhuis, Anne, ter Gast, Ellen, Wolvekamp, Monique, Homberg, Judith Regina, Piersma, Aldert H., Krul, Cyrille A.M., Genzel, Lisa, Kienhuis, Anne, ter Gast, Ellen, and Wolvekamp, Monique
- Abstract
There is a long-standing debate about experimental non-human animals and animal-free methods in scientific research. Among the various stakeholders involved in the debate are the scientists. During media broadcasts we, animal researchers and animal-free methods researchers, were positioned as ‘opponents’. In this essay we describe our initial rational thoughts and emotions after these events, and how we came together to explore our common ground on animal(−free) experimentation. Realizing that all models have advantages and limitations, our common ground lies in the principles of good scientific research and responsible experimentation. Our communication emanating from the broadcasts has been instrumental in improving communication on animal(−free) experimentation issues by teaming up. We strongly believe that this is essential for making well-informed decisions for the methods we are using now and will be using in the future.
- Published
- 2024
5. Report of the First ONTOX Stakeholder Network Meeting: Digging Under the Surface of ONTOX Together With the Stakeholders
- Author
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Diemar, Michael G., Vinken, Mathieu, Teunis, Marc, Krul, Cyrille A.M., Busquet, Francois, Zajac, Julia Dominika, Kandarova, Helena, Corvi, Raffaella, Rosso, Matteo Z., Kharina, Anastasiia, Bryndum, Louise Stab, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris P., Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm J., Castell, Jose V., Benfenati, Emilio, Yang, Huan, Perera, Simón, Paini, Alicia, Kramer, Nynke I., Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel G.J., Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, Roggen, Erwin L., Diemar, Michael G., Vinken, Mathieu, Teunis, Marc, Krul, Cyrille A.M., Busquet, Francois, Zajac, Julia Dominika, Kandarova, Helena, Corvi, Raffaella, Rosso, Matteo Z., Kharina, Anastasiia, Bryndum, Louise Stab, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris P., Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm J., Castell, Jose V., Benfenati, Emilio, Yang, Huan, Perera, Simón, Paini, Alicia, Kramer, Nynke I., Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel G.J., Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, and Roggen, Erwin L.
- Abstract
The first Stakeholder Network Meeting of the EU Horizon 2020-funded ONTOX project was held on 13–14 March 2023, in Brussels, Belgium. The discussion centred around identifying specific challenges, barriers and drivers in relation to the implementation of non-animal new approach methodologies (NAMs) and probabilistic risk assessment (PRA), in order to help address the issues and rank them according to their associated level of difficulty. ONTOX aims to advance the assessment of chemical risk to humans, without the use of animal testing, by developing non-animal NAMs and PRA in line with 21st century toxicity testing principles. Stakeholder groups (regulatory authorities, companies, academia, non-governmental organisations) were identified and invited to participate in a meeting and a survey, by which their current position in relation to the implementation of NAMs and PRA was ascertained, as well as specific challenges and drivers highlighted. The survey analysis revealed areas of agreement and disagreement among stakeholders on topics such as capacity building, sustainability, regulatory acceptance, validation of adverse outcome pathways, acceptance of artificial intelligence (AI) in risk assessment, and guaranteeing consumer safety. The stakeholder network meeting resulted in the identification of barriers, drivers and specific challenges that need to be addressed. Breakout groups discussed topics such as hazard versus risk assessment, future reliance on AI and machine learning, regulatory requirements for industry and sustainability of the ONTOX Hub platform. The outputs from these discussions provided insights for overcoming barriers and leveraging drivers for implementing NAMs and PRA. It was concluded that there is a continued need for stakeholder engagement, including the organisation of a ‘hackathon’ to tackle challenges, to ensure the successful implementation of NAMs and PRA in chemical risk assessment.
- Published
- 2024
6. Effects of exercise during chemo- or radiotherapy on immune markers - a systematic review
- Author
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De Hoop, Anne M S, Valkenet, Karin, Dronkers, Jaap J, Krul, Cyrille A M, Ruurda, Jelle P, Veenhof, Cindy, Pieters, Raymond H H, De Hoop, Anne M S, Valkenet, Karin, Dronkers, Jaap J, Krul, Cyrille A M, Ruurda, Jelle P, Veenhof, Cindy, and Pieters, Raymond H H
- Abstract
INTRODUCTION: Patients with cancer receiving radio- or chemotherapy undergo many immunological stressors. Chronic regular exercise has been shown to positively influence the immune system in several populations, while exercise overload may have negative effects. Exercise is currently recommended for all patients with cancer. However, knowledge regarding the effects of exercise on immune markers in patients undergoing chemo- or radiotherapy is limited. The aim of this study is to systematically review the effects of moderate- and high-intensity exercise interventions in patients with cancer during chemotherapy or radiotherapy on immune markers. METHODS: For this review, a search was performed in PubMed and EMBASE, until March 2023. Methodological quality was assessed with the PEDro tool and best-evidence syntheses were performed both per immune marker and for the inflammatory profile. RESULTS: Methodological quality of the 15 included articles was rated fair to good. The majority of markers were unaltered, but observed effects included a suppressive effect of exercise during radiotherapy on some pro-inflammatory markers, a preserving effect of exercise during chemotherapy on NK cell degranulation and cytotoxicity, a protective effect on the decrease in thrombocytes during chemotherapy, and a positive effect of exercise during chemotherapy on IgA. CONCLUSION: Although exercise only influenced a few markers, the results are promising. Exercise did not negatively influence immune markers, and some were positively affected since suppressed inflammation might have positive clinical implications. For future research, consensus is needed regarding a set of markers that are most responsive to exercise. Next, differential effects of training types and intensities on these markers should be further investigated, as well as their clinical implications.
- Published
- 2024
7. Report of the First ONTOX Stakeholder Network Meeting: Digging Under the Surface of ONTOX Together With the Stakeholders
- Author
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European Commission, Diemar, Michael G., Vinken, Mathieu, Teunis, Marc, Krul, Cyrille A. M., Busquet, Francois, Zajac, Julia Dominika, Kandarova, Helena, Corvi, Raffaella, Rosso, Matteo Z., Kharina, Anastasiia, Bryndum, Louise Stab, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris P., Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm J., Castell, José V., Benfenati, Emilio, Yang, Huan, Perera-Del-Rosario, Simón, Paini, Alicia, Kramer, Nynke I., Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel G. J., Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, Roggen, Erwin L., European Commission, Diemar, Michael G., Vinken, Mathieu, Teunis, Marc, Krul, Cyrille A. M., Busquet, Francois, Zajac, Julia Dominika, Kandarova, Helena, Corvi, Raffaella, Rosso, Matteo Z., Kharina, Anastasiia, Bryndum, Louise Stab, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris P., Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm J., Castell, José V., Benfenati, Emilio, Yang, Huan, Perera-Del-Rosario, Simón, Paini, Alicia, Kramer, Nynke I., Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel G. J., Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, and Roggen, Erwin L.
- Abstract
The first Stakeholder Network Meeting of the EU Horizon 2020-funded ONTOX project was held on 13–14 March 2023, in Brussels, Belgium. The discussion centred around identifying specific challenges, barriers and drivers in relation to the implementation of non-animal new approach methodologies (NAMs) and probabilistic risk assessment (PRA), in order to help address the issues and rank them according to their associated level of difficulty. ONTOX aims to advance the assessment of chemical risk to humans, without the use of animal testing, by developing non-animal NAMs and PRA in line with 21st century toxicity testing principles. Stakeholder groups (regulatory authorities, companies, academia, non-governmental organisations) were identified and invited to participate in a meeting and a survey, by which their current position in relation to the implementation of NAMs and PRA was ascertained, as well as specific challenges and drivers highlighted. The survey analysis revealed areas of agreement and disagreement among stakeholders on topics such as capacity building, sustainability, regulatory acceptance, validation of adverse outcome pathways, acceptance of artificial intelligence (AI) in risk assessment, and guaranteeing consumer safety. The stakeholder network meeting resulted in the identification of barriers, drivers and specific challenges that need to be addressed. Breakout groups discussed topics such as hazard versus risk assessment, future reliance on AI and machine learning, regulatory requirements for industry and sustainability of the ONTOX Hub platform. The outputs from these discussions provided insights for overcoming barriers and leveraging drivers for implementing NAMs and PRA. It was concluded that there is a continued need for stakeholder engagement, including the organisation of a ‘hackathon’ to tackle challenges, to ensure the successful implementation of NAMs and PRA in chemical risk assessment.
- Published
- 2024
8. Report of the First ONTOX Stakeholder Network Meeting : Digging Under the Surface of ONTOX Together With the Stakeholders
- Author
-
Diemar, Michael, Vinken, Mathieu, Teunis, Marc, Krul, Cyrille, Busquet, Francois, Dominika Zajac, Julia, Kandarova, Helena, Corvi, Raffaella, Rossi, Matteo, Kharina, Anastasiia, Stab Bryndum, Louise, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris, Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm, Castell, Jose, Benfenati, Emilio, Yang, Huan, Perera, Simón, Paini, Alicia, Kramer, Nynke, Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel, Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, Roggen, Erwin L., Diemar, Michael, Vinken, Mathieu, Teunis, Marc, Krul, Cyrille, Busquet, Francois, Dominika Zajac, Julia, Kandarova, Helena, Corvi, Raffaella, Rossi, Matteo, Kharina, Anastasiia, Stab Bryndum, Louise, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris, Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm, Castell, Jose, Benfenati, Emilio, Yang, Huan, Perera, Simón, Paini, Alicia, Kramer, Nynke, Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel, Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, and Roggen, Erwin L.
- Abstract
The first Stakeholder Network Meeting of the EU Horizon 2020-funded ONTOX project was held on 13–14 March 2023, in Brussels, Belgium. The discussion centred around identifying specific challenges, barriers and drivers in relation to the implementation of non-animal new approach methodologies (NAMs) and probabilistic risk assessment (PRA), in order to help address the issues and rank them according to their associated level of difficulty. ONTOX aims to advance the assessment of chemical risk to humans, without the use of animal testing, by developing non-animal NAMs and PRA in line with 21st century toxicity testing principles. Stakeholder groups (regulatory authorities, companies, academia, non-governmental organisations) were identified and invited to participate in a meeting and a survey, by which their current position in relation to the implementation of NAMs and PRA was ascertained, as well as specific challenges and drivers highlighted. The survey analysis revealed areas of agreement and disagreement among stakeholders on topics such as capacity building, sustainability, regulatory acceptance, validation of adverse outcome pathways, acceptance of artificial intelligence (AI) in risk assessment, and guaranteeing consumer safety. The stakeholder network meeting resulted in the identification of barriers, drivers and specific challenges that need to be addressed. Breakout groups discussed topics such as hazard versus risk assessment, future reliance on AI and machine learning, regulatory requirements for industry and sustainability of the ONTOX Hub platform. The outputs from these discussions provided insights for overcoming barriers and leveraging drivers for implementing NAMs and PRA. It was concluded that there is a continued need for stakeholder engagement, including the organisation of a ‘hackathon’ to tackle challenges, to ensure the successful implementation of NAMs and PRA in chemical risk assessment.
- Published
- 2024
9. Effects of exercise during chemo- or radiotherapy on immune markers - a systematic review
- Author
-
IRAS OH Toxicology, IRAS – One Health Toxicology, De Hoop, Anne M S, Valkenet, Karin, Dronkers, Jaap J, Krul, Cyrille A M, Ruurda, Jelle P, Veenhof, Cindy, Pieters, Raymond H H, IRAS OH Toxicology, IRAS – One Health Toxicology, De Hoop, Anne M S, Valkenet, Karin, Dronkers, Jaap J, Krul, Cyrille A M, Ruurda, Jelle P, Veenhof, Cindy, and Pieters, Raymond H H
- Published
- 2024
10. Report of the First ONTOX Stakeholder Network Meeting: Digging Under the Surface of ONTOX Together With the Stakeholders
- Author
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IRAS OH Toxicology, Afd Pharmacology, IRAS – One Health Toxicology, Diemar, Michael G., Vinken, Mathieu, Teunis, Marc, Krul, Cyrille A.M., Busquet, Francois, Zajac, Julia Dominika, Kandarova, Helena, Corvi, Raffaella, Rosso, Matteo Z., Kharina, Anastasiia, Bryndum, Louise Stab, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris P., Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm J., Castell, Jose V., Benfenati, Emilio, Yang, Huan, Perera, Simón, Paini, Alicia, Kramer, Nynke I., Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel G.J., Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, Roggen, Erwin L., IRAS OH Toxicology, Afd Pharmacology, IRAS – One Health Toxicology, Diemar, Michael G., Vinken, Mathieu, Teunis, Marc, Krul, Cyrille A.M., Busquet, Francois, Zajac, Julia Dominika, Kandarova, Helena, Corvi, Raffaella, Rosso, Matteo Z., Kharina, Anastasiia, Bryndum, Louise Stab, Santillo, Michael, Bloch, Denise, Kucheryavenko, Olena, Panagiotakos, Demosthenes, Rogiers, Vera, Beekhuijzen, Manon, Giusti, Arianna, Najjar, Abdulkarim, Courage, Carol, Koenig, Torben, Kolle, Susanne, Boonen, Harrie, Dhalluin, Stephane, Boberg, Julie, Müller, Boris P., Kukic, Predrag, Ritskes-Hoitinga, Merel, Grasselli, Elena, Zietek, Tamara, Stoddart, Gilly, Heusinkveld, Harm J., Castell, Jose V., Benfenati, Emilio, Yang, Huan, Perera, Simón, Paini, Alicia, Kramer, Nynke I., Hartung, Thomas, Janssen, Manoe, Fritsche, Ellen, Jennen, Danyel G.J., Piumatti, Matteo, Rathman, James, Marusczyk, Jörg, Milec, Lucia, and Roggen, Erwin L.
- Published
- 2024
11. Report of the First ONTOX Stakeholder Network Meeting: Digging Under the Surface of ONTOX Together With the Stakeholders
- Author
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Diemar, Michael G., primary, Vinken, Mathieu, additional, Teunis, Marc, additional, Krul, Cyrille A.M., additional, Busquet, Francois, additional, Zajac, Julia Dominika, additional, Kandarova, Helena, additional, Corvi, Raffaella, additional, Rossi, Matteo Z., additional, Kharina, Anastasiia, additional, Bryndum, Louise Stab, additional, Santillo, Michael, additional, Bloch, Denise, additional, Kucheryavenko, Olena, additional, Panagiotakos, Demosthenes, additional, Rogiers, Vera, additional, Beekhuijzen, Manon, additional, Giusti, Arianna, additional, Najjar, Abdulkarim, additional, Courage, Carol, additional, Koenig, Torben, additional, Kolle, Susanne, additional, Boonen, Harrie, additional, Dhalluin, Stephane, additional, Boberg, Julie, additional, Müller, Boris P., additional, Kukic, Predrag, additional, Ritskes-Hoitinga, Merel, additional, Grasselli, Elena, additional, Zietek, Tamara, additional, Stoddart, Gilly, additional, Heusinkveld, Harm J., additional, Castell, Jose V., additional, Benfenati, Emilio, additional, Yang, Huan, additional, Perera, Simón, additional, Paini, Alicia, additional, Kramer, Nynke I., additional, Hartung, Thomas, additional, Janssen, Manoe, additional, Fritsche, Ellen, additional, Jennen, Danyel G.J., additional, Piumatti, Matteo, additional, Rathman, James, additional, Marusczyk, Jörg, additional, Milec, Lucia, additional, and Roggen, Erwin L., additional
- Published
- 2024
- Full Text
- View/download PDF
12. Effects of Exercise during Chemo- or Radiotherapy on Immune Markers: A Systematic Review.
- Author
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de Hoop, Anne M.S., Valkenet, Karin, Dronkers, Jaap J., Krul, Cyrille A.M., Ruurda, Jelle P., Veenhof, Cindy, and Pieters, Raymond H.H.
- Subjects
MEDICAL information storage & retrieval systems ,HIGH-intensity interval training ,TUMOR markers ,CANCER chemotherapy ,SYSTEMATIC reviews ,MEDLINE ,TUMORS ,ONLINE information services ,INFLAMMATION - Abstract
Introduction: Patients with cancer receiving radio- or chemotherapy undergo many immunological stressors. Chronic regular exercise has been shown to positively influence the immune system in several populations, while exercise overload may have negative effects. Exercise is currently recommended for all patients with cancer. However, knowledge regarding the effects of exercise on immune markers in patients undergoing chemo- or radiotherapy is limited. The aim of this study is to systematically review the effects of moderate- and high-intensity exercise interventions in patients with cancer during chemotherapy or radiotherapy on immune markers. Methods: For this review, a search was performed in PubMed and EMBASE, until March 2023. Methodological quality was assessed with the PEDro tool and best-evidence syntheses were performed both per immune marker and for the inflammatory profile. Results: Methodological quality of the 15 included articles was rated fair to good. The majority of markers were unaltered, but observed effects included a suppressive effect of exercise during radiotherapy on some pro-inflammatory markers, a preserving effect of exercise during chemotherapy on NK cell degranulation and cytotoxicity, a protective effect on the decrease in thrombocytes during chemotherapy, and a positive effect of exercise during chemotherapy on IgA. Conclusion: Although exercise only influenced a few markers, the results are promising. Exercise did not negatively influence immune markers, and some were positively affected since suppressed inflammation might have positive clinical implications. For future research, consensus is needed regarding a set of markers that are most responsive to exercise. Next, differential effects of training types and intensities on these markers should be further investigated, as well as their clinical implications. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
13. Effects of exercise during chemo- or radiotherapy on immune markers – a systematic review
- Author
-
De Hoop, Anne M.S., primary, Valkenet, Karin, additional, Dronkers, Jaap J., additional, Krul, Cyrille A.M., additional, Ruurda, Jelle P., additional, Veenhof, Cindy, additional, and Pieters, Raymond H.H., additional
- Published
- 2023
- Full Text
- View/download PDF
14. DARTpaths, an in silico platform to investigate molecular mechanisms of compounds
- Author
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Bhalla, Diksha, Steijaert, Marvin N, Poppelaars, Eefje S, Teunis, Marc, van der Voet, Monique, Corradi, Marie, Dévière, Elisabeth, Noothout, Luke, Tomassen, Wilco, Rooseboom, Martijn, Currie, Richard A, Krul, Cyrille, Pieters, Raymond, van Noort, Vera, Wildwater, Marjolein, Bhalla, Diksha, Steijaert, Marvin N, Poppelaars, Eefje S, Teunis, Marc, van der Voet, Monique, Corradi, Marie, Dévière, Elisabeth, Noothout, Luke, Tomassen, Wilco, Rooseboom, Martijn, Currie, Richard A, Krul, Cyrille, Pieters, Raymond, van Noort, Vera, and Wildwater, Marjolein
- Abstract
SUMMARY: Xpaths is a collection of algorithms that allow for the prediction of compound-induced molecular mechanisms of action by integrating phenotypic endpoints of different species; and proposes follow-up tests for model organisms to validate these pathway predictions. The Xpaths algorithms are applied to predict developmental and reproductive toxicity (DART) and implemented into an in silico platform, called DARTpaths.AVAILABILITY AND IMPLEMENTATION: All code is available on GitHub https://github.com/Xpaths/dartpaths-app under Apache license 2.0, detailed overview with demo is available at https://www.vivaltes.com/dartpaths/.SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
- Published
- 2023
15. DARTpaths, an in silico platform to investigate molecular mechanisms of compounds
- Author
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IRAS OH Toxicology, Bhalla, Diksha, Steijaert, Marvin N, Poppelaars, Eefje S, Teunis, Marc, van der Voet, Monique, Corradi, Marie, Dévière, Elisabeth, Noothout, Luke, Tomassen, Wilco, Rooseboom, Martijn, Currie, Richard A, Krul, Cyrille, Pieters, Raymond, van Noort, Vera, Wildwater, Marjolein, IRAS OH Toxicology, Bhalla, Diksha, Steijaert, Marvin N, Poppelaars, Eefje S, Teunis, Marc, van der Voet, Monique, Corradi, Marie, Dévière, Elisabeth, Noothout, Luke, Tomassen, Wilco, Rooseboom, Martijn, Currie, Richard A, Krul, Cyrille, Pieters, Raymond, van Noort, Vera, and Wildwater, Marjolein
- Published
- 2023
16. Effects of exercise during chemo- or radiotherapy on immune markers - a systematic review
- Author
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Fysiotherapiewetenschap, Brain, MS CGO, Cancer, De Hoop, Anne M S, Valkenet, Karin, Dronkers, Jaap J, Krul, Cyrille A M, Ruurda, Jelle P, Veenhof, Cindy, Pieters, Raymond H H, Fysiotherapiewetenschap, Brain, MS CGO, Cancer, De Hoop, Anne M S, Valkenet, Karin, Dronkers, Jaap J, Krul, Cyrille A M, Ruurda, Jelle P, Veenhof, Cindy, and Pieters, Raymond H H
- Published
- 2023
17. Beyond Animal Testing Index: Benchmarking Tool for a World beyond Animal Testing.
- Author
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Krul, Cyrille, De Moor, Annick, Stegmeijer, Koen, Stoop, Reinout, Van Luijk, Judith, and Prins, Jan-Bas
- Abstract
While the original definition of replacement focuses on the replacement of the use of animals in science, a more contemporary definition focuses on accelerating the development and use of predictive and robust models, based on the latest science and technologies, to address scientific questions without the use of animals. The transition to animal free innovation is on the political agenda in and outside the European Union. The Beyond Animal Testing Index (BATI) is a benchmarking instrument designed to provide insight into the activities and contributions of research institutes to the transition to animal free innovation. The BATI allows participating organizations to learn from each other and stimulates continuous improvement. The BATI was modelled after the Access to Medicine Index, which benchmarks pharmaceutical companies on their efforts to make medicines widely available in developing countries. A prototype of the BATI was field-tested with three Dutch academic medical centers and two universities in 2020-2021. The field test demonstrated the usability and effectiveness of the BATI as a benchmarking tool. Analyses were performed across five different domains. The participating institutes concluded that the BATI served as an internal as well as an external stimulus to share, learn, and improve institutional strategies towards the transition to animal free innovation. The BATI also identified gaps in the development and implementation of 3R technologies. Hence, the BATI might be a suitable instrument for monitoring the effectiveness of policies. BATI version 1.0 is ready to be used for benchmarking at a larger scale. Plain language summary The use of animals for research is being scrutinized by the public. The transition to animal-free methods is on the political agenda in and outside the European Union. This requires accelerating the development and use of useful and reliable animal-free methods. The Beyond Animal Testing Index (BATI) is designed to provide insight into the activities and contributions of research institutes to the transition to animal-free innovation. The BATI allows participating organizations to learn from each other and stimulates continuous improvement. A prototype of the BATI was field-tested with three Dutch academic medical centers and two universities in 2020-2021. The field test showed that the BATI could be used to monitor how effective policies are and to show where more work is needed towards the full replacement of animals in research. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
18. Beyond Animal Testing Index: Benchmarking tool for a world beyond animal testing_suppl5
- Author
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Krul, Cyrille, primary
- Published
- 2023
- Full Text
- View/download PDF
19. DARTpaths, an in silico platform to investigate molecular mechanisms of compounds
- Author
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Bhalla, Diksha, primary, Steijaert, Marvin N, additional, Poppelaars, Eefje S, additional, Teunis, Marc, additional, van der Voet, Monique, additional, Corradi, Marie, additional, Dévière, Elisabeth, additional, Noothout, Luke, additional, Tomassen, Wilco, additional, Rooseboom, Martijn, additional, Currie, Richard A, additional, Krul, Cyrille, additional, Pieters, Raymond, additional, van Noort, Vera, additional, and Wildwater, Marjolein, additional
- Published
- 2022
- Full Text
- View/download PDF
20. The Virtual Human Platform for Safety Assessment (VHP4Safety) project: Next generation chemical safety assessment based on human data.
- Author
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Kienhuis A, Krul C, van Engelen J, Evelo CT, Hessel E, Hoekman J, Kramer N, Krop E, Masereeuw R, Moors E, Negro SO, Piersma AH, Pieters R, Teunis M, Willighagen E, and Legler J
- Abstract
The Virtual Human Platform for Safety Assessment (VHP4Safety) project aims to build a Virtual Human Platform (VHP) to protect human health and revolutionize the safety assessment of chemicals and pharmaceuticals by transitioning from animal-based to human-based approaches. The goal of this article is to introduce the project and its interdisciplinary approach to co-creation with multiple academic, regulatory, industrial and societal partners covering the entire safety assessment knowledge chain. Three research lines drive the project: 1) building the VHP; 2) feeding the VHP with human data; and 3) implementing the VHP. The project focusses on three case studies that incorporate human relevant scenarios not included in current animal-based safety assessment strategies. The VHP is built on tools and services, including pharmacokinetic and computational models, and integrates several data sources within each case study, including data on human physiology, epidemiology, toxicokinetic and -dynamic parameters, as well as data on chemical characteristics and exposures. In addition, the VHP integrates new data generated within the project using new approach methodologies representing key events within adverse outcome pathways. Implementation of the VHP is investigated using an innovation systems approach, engaging stakeholders and organizing training and education. Central to the VHP4Safety project is our co-creative approach, which facilitated by biannual designathons and hackathons that foster active involvement of all project participants from over 30 partner organizations. By integrating technological innovations with transparency and stakeholder collaboration, the VHP4Safety project will help shape the transition to the next generation safety assessment in which animal testing becomes redundant.
- Published
- 2024
- Full Text
- View/download PDF
21. DARTpaths, an in silico platform to investigate molecular mechanisms of compounds.
- Author
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Bhalla D, Steijaert MN, Poppelaars ES, Teunis M, van der Voet M, Corradi M, Dévière E, Noothout L, Tomassen W, Rooseboom M, Currie RA, Krul C, Pieters R, van Noort V, and Wildwater M
- Subjects
- Software, Algorithms
- Abstract
Summary: Xpaths is a collection of algorithms that allow for the prediction of compound-induced molecular mechanisms of action by integrating phenotypic endpoints of different species; and proposes follow-up tests for model organisms to validate these pathway predictions. The Xpaths algorithms are applied to predict developmental and reproductive toxicity (DART) and implemented into an in silico platform, called DARTpaths., Availability and Implementation: All code is available on GitHub https://github.com/Xpaths/dartpaths-app under Apache license 2.0, detailed overview with demo is available at https://www.vivaltes.com/dartpaths/., Supplementary Information: Supplementary data are available at Bioinformatics online., (© The Author(s) 2022. Published by Oxford University Press.)
- Published
- 2023
- Full Text
- View/download PDF
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