Background: The involvement of Mediterranean fever (MEFV) gene mutations in patients with inflammatory bowel disease unclassified (IBDU) remains unclear. This study aimed to determine the clinical characteristics and responsiveness to colchicine in Japanese patients with IBDU carrying MEFV mutations., Methods: In this retrospective cohort study, we examined MEFV mutations using gene analysis, clinical information, and colchicine responsiveness. Furthermore, we examined cytokine production in exon 2-mutated THP-1 cells (a monocytic cell line) and microbiome analysis., Findings: Of the 396 patients diagnosed with IBDU, 60.1% had MEFV mutations. Exon 2 mutations were the most common (83.7%). Among patients with available clinical information, 43.3% of patients with IBDU had typical Familial Mediterranean fever (FMF). The efficacy of colchicine in patients with IBDU carrying MEFV mutations was 84.6%. Significant differences were noted in the production of inflammatory; cytokines between THP-1 cells with and without MEFV mutations. Microbial compositions differed between patients with IBDU carrying MEFV mutations and patients with IBD and healthy controls., Interpretation: Patients with IBDU carrying MEFV mutations responded well to colchicine treatment. A notable subset of patients met the criteria for typical FMF. Alterations in intestinal microbiota may contribute to disease pathogenesis., Funding: This work was supported by the Japan Agency for Medical Research and Development (21ek0410057h0003), a grant from the Uehara Memorial Foundation, and the Health and Labour Sciences Research Grants for research on intractable diseases from the Ministry of Health, Labour and Welfare (MHLW) of Japan (Investigation and Research for Intractable Inflammatory Bowel Disease; Grant Number 20316729)., Competing Interests: Declaration of interests Dr Hiroshi Nakase (HN) reports receiving personal fees from Abbvie Inc., Kissei Pharmaceutical Co., Ltd., KYORIN Pharmaceutical Co., Ltd, Mitsubishi Tanabe Pharma Corporation, Janssen Pharmaceutical K.K, Takeda Pharmaceutical Co., Ltd., Pfizer Japan Inc., EA Pharma Co., Ltd., Mochida Pharmaceutical Co., Ltd., Daiichi Sankyo Co., Ltd., Gilead Sciences Inc., VIATRIS Inc., JIMRO Co., Ltd., and grants for commissioned/joint research from Hoya Group Pentax Medical, Mitsubishi Tanabe Pharma Corporation, Mochida Pharmaceutical Co., Ltd., and Abbvie Inc. He has endowed chair by Miyarisan Pharmaceutical Co., Mochida Pharmaceutical Co., Ltd. JIMRO Co., Ltd., and KYORIN Pharmaceutical Co., Ltd. Dr Taku Kobayashi (TK) served as an advisory board member, consultant, or speaker for AbbVie, Activaid, Alfresa Pharma, Alimentiv, Bristol Myers Squibb, Celltrion, Covidien, EA Pharma, Eli Lilly, Ferring Pharmaceuticals, Galapagos, Gilead Sciences, Janssen Pharmaceuticals, JIMRO, Kissei Pharmaceutical, Kyorin Pharmaceutical, Mitsubishi Tanabe Pharma, Mochida Pharmaceutical, Nippon Kayaku, Pfizer, Takeda, and Zeria Pharmaceutical, and has received research funding from AbbVie, Alfresa Pharma, Bristol Myers Squibb, EA Pharma, Gilead Sciences, Kyorin Pharmaceutical, Mochida Pharmaceutical, Nippon Kayaku, Otsuka Holdings, Pfizer, Sekisui Medical, Takeda, and Zeria Pharmaceutical. Dr Takayuki Matsumoto (TM) reports receiving personal fees from Abbvie Inc., Kissei Pharmaceutical Co., Ltd., KYORIN Pharmaceutical Co., Ltd, Mitsubishi Tanabe Pharma Corporation, Janssen Pharmaceutical K.K, Takeda Pharmaceutical Co., Ltd., Pfizer Japan Inc., EA Pharma Co., Ltd., Mochida Pharmaceutical Co., Ltd., Gilead Sciences Inc., VIATRIS Inc., JIMRO Co., Ltd. Dr Motohiro Esaki (ME) reports receiving personal lecture fees from AbbVie GK, Mitsubishi Tanabe Pharma, EA Pharma Co., Ltd., Janssen Pharmaceutical; Takeda Pharmaceuticals, Pfizer Japan Inc., Gilead Sciences Inc., research grants from Alfresa Pharma Corporation, and scholarship donation from Pfizer Japan Inc. and KYORIN Pharmaceutical Co., Ltd. Dr Kenji Watanabe (KW) reports receiving research support or contract of clinical trial from EA Pharma Co., Ltd., Takeda Pharmaceutical Co., Ltd., and AbbVie Japan Co., Ltd., and JIMRO Co., Ltd. He reports receiving payment for consulting, lectures, presentations, educational events, or expert testimony from EA Pharma Co., Ltd., AbbVie Japan Co., Ltd., Takeda Pharmaceutical Co., Ltd., Janssen Pharmaceutical K.K., and Kissei Pharmaceutical Co., Ltd., Mitsubishi Tanabe Pharma Corporation, Kyorin Pharmaceutical Co., Ltd., JIMRO Co., Ltd., Mochida Pharmaceutical Co., Ltd., Pfizer Japan Inc., Zeria Pharmaceutical Co., Ltd., Nippon Kayaku Co., Ltd, and support for attending meetings from EA Pharma Co., Ltd., AbbVie Japan Co., Ltd., Mitsubishi Tanabe Pharma Corporation, Takeda Pharmaceutical Co., Ltd., Kyorin Pharmaceutical Co., Ltd., JIMRO Co., Ltd., Mochida Pharmaceutical Co., Ltd., Janssen Pharmaceutical K.K., Pfizer Japan Inc., Zeria Pharmaceutical Co., Ltd., Nippon Kayaku Co., Ltd, Kissei Pharmaceutical Co., Ltd., and Olympus Corporation. He reports participating on data safety monitoring board or advisory board for EA Pharma Co., Ltd., Takeda Pharmaceutical Co., Ltd., AbbVie Japan Co., Ltd., Janssen Pharmaceutical K.K., JIMRO Co., Ltd., Mochida Pharmaceutical Co., Ltd., and Kissei Pharmaceutical Co., Ltd. and receiving medical writing from Takeda Pharmaceutical Co., Ltd., Pfizer Inc., and AbbVie Japan Co., Ltd., and trial use of endoscopic equipment from Olympus Corporation. Dr Reiko Kunisaki (RK) reports receiving personal fees from Abbvie Inc., EA Pharma Co., Ltd., Janssen Pharmaceutical K.K, JIMRO Co., Ltd, KYORIN Pharmaceutical Co., Ltd, Nippon Kayaku Co., Ltd., Mitsubishi Tanabe Pharma Corporation, Takeda Pharma Co Ltd, and grants for commissioned/joint research from Abbvie Inc., EA Pharma Co., Ltd., Eli Lill Japan, Janssen Pharmaceutical K.K, JIMRO Co., Ltd, Takeda Pharma Co Ltd, Viatris Inc, VectivBio, outside the submitted work. Dr Katsuhiro Arai (KA) reports receiving grants support from Janssen Pharmaceutical K.K., Bristol-Myers Squibb Company, Eli Lilly Japan K.K., Takeda Pharmaceutical CO., Ltd., Pfizer Inc., and Zeria Pharmaceutical Co., Ltd., and consulting fees from EA Pharma Co., Ltd., AbbVie GK, Takeda Pharmaceutical Co., Ltd., Janssen Pharmaceutical K.K., and Zeria Pharmaceutical Co., Ltd., and honoraria for lecture from AbbVie GK, EA Pharma Co., Ltd., Nobelpharma Co., Ltd., Takeda Pharmaceutical Co., Ltd., Kyorin Pharmaceutical Co., Ltd., Janssen Pharmaceutical K.K., Mitsubishi Tanabe Pharma Co., Ltd., Miyarisan Pharmaceutical Co., Ltd., Kissei Pharmaceutical Co., Ltd., Mochida Pharmaceutical Co., Ltd., Nippon Kayaku Co., Ltd., and Chugai Pharmaceutical Co., Ltd. Dr Dai Ishikawa (DI) reports receiving personal lecture fees from AbbVie GK, EA Pharma Co., Ltd., Zeria Pharmaceutical Co., Ltd., Takeda Pharmaceutical Co., Ltd., Kyorin Pharmaceutical Co., Ltd., Janssen Pharmaceutical K.K., Mitsubishi Tanabe Pharma Co., Ltd., Miyarisan Pharmaceutical Co., Ltd., Kissei Pharmaceutical Co., Ltd., Mochida Pharmaceutical Co., Ltd., and Pfizer Japan Inc. Dr Yuichi Matsuno (YM) reports receiving personal lecture fees from Mitsubishi Tanabe Pharma, Mochida Pharmaceutical Co., Ltd. Dr Hirotake Sakuraba (HS) receiving personal fees from AbbVie Inc., Takeda Pharmaceutical Co., Ltd, Janssen Pharmaceutical K.K., Pfizer Japan Inc., Mitsubishi Tanabe Pharma Factory Ltd., Eisai Co., Ltd, Nippon Kayaku Co., Ltd, EA Pharma Co., Ltd., and research grants from Yakult Honsha Co., Ltd, LAVIEPRE Co., Ltd, Kao Corporation, Bristol-Myers Squibb Company, AbbVie Inc., AsahiKASEI Pharma Co., Ltd. Dr Nobuhiro Ueno (NU) reports receiving educational grant support from Pfizer Inc. Dr Kaoru Yokoyama (KY) reports receiving personal fees from Abbvie Inc., EA Pharma Co., Ltd., Gilead Sciences Inc. and Takeda Pharmaceutical Co., Ltd. Dr Masayuki Saruta (MS) received scholarship grants form Abbvie GK, EPS Corporation, Zeria Pharmaceutical Co., Ltd, Mochida Pharmaceutical Co., Ltd, EA Pharma Co., Ltd, Kissei Pharmaceutical Co., Ltd, CMIC CMO Co., Ltd., PPD-SNBL K.K. and lecture fees from Abbvie GK, Janssen Pharma K.K., Mitsubishi Tanabe Pharma, Takeda Pharmaceutical Co., Ltd., Kissei Pharmaceutical Co., Ltd, EA Pharma Co., Ltd, Gilead Sciences K.K., Mochida Pharmaceutical Co., Ltd, Viatris Pharmaceutical Co., Ltd., Nobelpharma Co., Ltd. Dr Masanori Nojima (MN) reports receiving consulting fees from Chugai Pharmaceutical Co., Ltd., JIMRO Co. Ltd., and Alfresa Pharma Corporation, and honoraria for lectures from EA pharma Co. Ltd., Eisai Co., Ltd., and JIMRO Co. Ltd. Dr Tadakazu Hisamatsu (TH) reports jointing research of EA pharma Co. Ltd., and Kissei Pharmaceutical Co. Ltd., and receiving grants support from Mitsubishi Tanabe Pharma Corporation, AbbVie GK, JIMRO Co. Ltd., Zeria Pharmaceutical Co. Ltd., Kyorin Pharmaceutical Co. Ltd., Nippon Kayaku Co. Ltd., Takeda Pharmaceutical Co. Ltd., Pfizer Inc., Mochida Pharmaceutical Co. Ltd., and Boston Scientific Corporation, and consulting fees from Mitsubishi Tanabe Pharma Corporation, EA pharma Co. Ltd., AbbVie GK, Janssen Pharmaceutical K.K., Pfizer Inc., Nichi-Iko Pharmaceutical Co. Ltd., Eli Lilly, Gilead Sciences, Bristol Myers Squibb, and Takeda Pharmaceutical Co. Ltd., and honoraria for lectures from Mitsubishi Tanabe Pharma Corporation, EA pharma Co. Ltd., AbbVie GK, Janssen Pharmaceutical K.K., Pfizer Inc., Nichi-Iko Pharmaceutical Co. Ltd., Eli Lilly, Gilead Sciences, Bristol Myers Squibb, Mochida Pharmaceutical Co., Ltd., JIMRO Co. Ltd., and Takeda Pharmaceutical Co. Ltd. Dr. Kohei Wagatsuma (KH), Teruyuki Takeda (TT), Takashi Ibuka (TI), Ryota Hokari (RH), Junji Yokoyama (JK), and Shu Tamano (ST) reports no relevant conflicts of interest for this article., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)