20 results on '"Jonathan D. Coop"'
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2. Biogeographic patterns of daily wildfire spread and extremes across North America
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Jared A. Balik, Jonathan D. Coop, Meg A. Krawchuk, Cameron E. Naficy, Marc-André Parisien, Sean A. Parks, Camille S. Stevens-Rumann, and Ellen Whitman
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wildfire ,extreme events ,daily fire progression ,fire spread ,fire growth ,fire duration ,Forestry ,SD1-669.5 ,Environmental sciences ,GE1-350 - Abstract
IntroductionClimate change is predicted to increase the frequency of extreme single-day fire spread events, with major ecological and social implications. In contrast with well-documented spatio-temporal patterns of wildfire ignitions and perimeters, daily progression remains poorly understood across continental spatial scales, particularly for extreme single-day events (“blow ups”). Here, we characterize daily wildfire spread across North America, including occurrence of extreme single-day events, duration and seasonality of fire and extremes, and ecoregional climatic niches of fire in terms of Actual Evapotranspiration (AET) and Climatic Water Deficit (CWD) annual climate normals.MethodsRemotely sensed daily progression of 9,636 wildfires ≥400 ha was used to characterize ecoregional patterns of fire growth, extreme single-day events, duration, and seasonality. To explore occurrence, extent, and impacts of single-day extremes among ecoregions, we considered complementary ecoregional and continental extreme thresholds (Ecoregional or Continental Mean Daily Area Burned + 2SD). Ecoregional spread rates were regressed against AET and CWD to explore climatic influence on spread.ResultsWe found three-fold differences in mean Daily Area Burned among 10 North American ecoregions, ranging from 260 ha day−1 in the Marine West Coast Forests to 751 ha day−1 in Mediterranean California. Ecoregional extreme thresholds ranged from 3,829 ha day−1 to 16,626 ha day−1, relative to a continental threshold of 7,173 ha day−1. The ~3% of events classified as extreme cumulatively account for 16–55% of total area burned among ecoregions. We observed four-fold differences in mean fire duration, ranging from 2.7 days in the Great Plains to 10.5 days in Northwestern Forested Mountains. Regions with shorter fire durations also had greater daily area burned, suggesting a paradigm of fast-growing short-duration fires in some regions and slow-growing long-duration fires elsewhere. CWD had a weak positive relationship with spread rate and extreme thresholds, and there was no pattern for AET.DiscussionRegions with shorter fire durations had greater daily area burned, suggesting a paradigm of fast-growing short-duration fires in some regions and slow-growing long-duration fires elsewhere. Although climatic conditions can set the stage for ignition and influence vegetation and fuels, finer-scale mechanisms likely drive variation in daily spread. Daily fire progression offers valuable insights into the regional and seasonal distributions of extreme single-day spread events, and how these events shape net fire effects.
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- 2024
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3. Historical fire regimes and contemporary fire effects within sagebrush habitats of Gunnison Sage‐grouse
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Petar Z. Simic, Jonathan D. Coop, Ellis Q. Margolis, Jessica R. Young, and Manuel K. Lopez
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Artemisia tridentata ,Bromus tectorum ,fire regimes ,fire scar ,Gunnison Sage‐grouse ,ponderosa pine ,Ecology ,QH540-549.5 - Abstract
Abstract The historical role of fire in sagebrush (Artemisia tridentata) landscapes remains poorly understood, yet is important to inform management and conservation of obligate species such as the threatened Gunnison Sage‐grouse (GUSG; Centrocercus minimus). We reconstructed fire histories from tree‐ring fire scars at sagebrush–forest ecotones (10 sites, 111 trees) to better understand the role of fire in sagebrush landscapes of the Upper Gunnison Basin (UGB), Colorado, and how fire may have changed following Euro‐American settlement. We assessed likely influences of historical fire by surveying plant composition and structure at 100 sagebrush sites with and without recent (2001–2020) fires. Tree‐ring fire scars revealed a history of repeated low‐severity fire at sagebrush–forest ecotones until 1892, followed by over a century without fire. Between 1684 and 1892, the mean fire interval (MFI) among sites averaged 49.6 years (ranging from 18.2 to 119 years). Fire over this period occurred synchronously at two or more sites on average every 23.6 years, potentially indicative of spread between sites. Most (70%) of the historical fires burned in the early growing season, consistent with times of strong wind. Recent burns exhibited reductions in sagebrush cover (5% vs. 25% in unburned sites) and concomitant increases in herbaceous cover (55% vs. 40%). These differences declined over time but persisted for at least two decades. Burned sites were dominated by native perennial grasses, forbs, and resprouting shrub species. Historically, such openings may have served as seasonal GUSG habitat. Our results indicate that parts of the UGB sagebrush landscapes were characterized historically by frequent fire and dynamic vegetation mosaics that included open, grassy patches. These findings support the use of prescribed fire to restore and maintain this ecological process and vegetation heterogeneity. However, the contemporary context for fire has changed and now includes substantially reduced, Endangered Species Act (ESA)‐listed GUSG populations, increased risk of non‐native plant invasion, and climate warming. These circumstances highlight new risks, information needs, and opportunities for key knowledge co‐production via management–research partnerships.
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- 2023
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4. The North American tree‐ring fire‐scar network
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Ellis Q. Margolis, Christopher H. Guiterman, Raphaël D. Chavardès, Jonathan D. Coop, Kelsey Copes‐Gerbitz, Denyse A. Dawe, Donald A. Falk, James D. Johnston, Evan Larson, Hang Li, Joseph M. Marschall, Cameron E. Naficy, Adam T. Naito, Marc‐André Parisien, Sean A. Parks, Jeanne Portier, Helen M. Poulos, Kevin M. Robertson, James H. Speer, Michael Stambaugh, Thomas W. Swetnam, Alan J. Tepley, Ichchha Thapa, Craig D. Allen, Yves Bergeron, Lori D. Daniels, Peter Z. Fulé, David Gervais, Martin P. Girardin, Grant L. Harley, Jill E. Harvey, Kira M. Hoffman, Jean M. Huffman, Matthew D. Hurteau, Lane B. Johnson, Charles W. Lafon, Manuel K. Lopez, R. Stockton Maxwell, Jed Meunier, Malcolm North, Monica T. Rother, Micah R. Schmidt, Rosemary L. Sherriff, Lauren A. Stachowiak, Alan Taylor, Erana J. Taylor, Valerie Trouet, Miguel L. Villarreal, Larissa L. Yocom, Karen B. Arabas, Alexis H. Arizpe, Dominique Arseneault, Alicia Azpeleta Tarancón, Christopher Baisan, Erica Bigio, Franco Biondi, Gabriel D. Cahalan, Anthony Caprio, Julián Cerano‐Paredes, Brandon M. Collins, Daniel C. Dey, Igor Drobyshev, Calvin Farris, M. Adele Fenwick, William Flatley, M. Lisa Floyd, Ze'ev Gedalof, Andres Holz, Lauren F. Howard, David W. Huffman, Jose Iniguez, Kurt F. Kipfmueller, Stanley G. Kitchen, Keith Lombardo, Donald McKenzie, Andrew G. Merschel, Kerry L. Metlen, Jesse Minor, Christopher D. O'Connor, Laura Platt, William J. Platt, Thomas Saladyga, Amanda B. Stan, Scott Stephens, Colleen Sutheimer, Ramzi Touchan, and Peter J. Weisberg
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climate ,dendrochronology ,fire regime ,fire scar ,humans ,pyrogeography ,Ecology ,QH540-549.5 - Abstract
Abstract Fire regimes in North American forests are diverse and modern fire records are often too short to capture important patterns, trends, feedbacks, and drivers of variability. Tree‐ring fire scars provide valuable perspectives on fire regimes, including centuries‐long records of fire year, season, frequency, severity, and size. Here, we introduce the newly compiled North American tree‐ring fire‐scar network (NAFSN), which contains 2562 sites, >37,000 fire‐scarred trees, and covers large parts of North America. We investigate the NAFSN in terms of geography, sample depth, vegetation, topography, climate, and human land use. Fire scars are found in most ecoregions, from boreal forests in northern Alaska and Canada to subtropical forests in southern Florida and Mexico. The network includes 91 tree species, but is dominated by gymnosperms in the genus Pinus. Fire scars are found from sea level to >4000‐m elevation and across a range of topographic settings that vary by ecoregion. Multiple regions are densely sampled (e.g., >1000 fire‐scarred trees), enabling new spatial analyses such as reconstructions of area burned. To demonstrate the potential of the network, we compared the climate space of the NAFSN to those of modern fires and forests; the NAFSN spans a climate space largely representative of the forested areas in North America, with notable gaps in warmer tropical climates. Modern fires are burning in similar climate spaces as historical fires, but disproportionately in warmer regions compared to the historical record, possibly related to under‐sampling of warm subtropical forests or supporting observations of changing fire regimes. The historical influence of Indigenous and non‐Indigenous human land use on fire regimes varies in space and time. A 20th century fire deficit associated with human activities is evident in many regions, yet fire regimes characterized by frequent surface fires are still active in some areas (e.g., Mexico and the southeastern United States). These analyses provide a foundation and framework for future studies using the hundreds of thousands of annually‐ to sub‐annually‐resolved tree‐ring records of fire spanning centuries, which will further advance our understanding of the interactions among fire, climate, topography, vegetation, and humans across North America.
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- 2022
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5. Rocky Mountain forests are poised to recover following bark beetle outbreaks but with altered composition
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Kyle C. Rodman, Robert A. Andrus, Amanda R. Carlson, Trevor A. Carter, Teresa B. Chapman, Jonathan D. Coop, Paula J. Fornwalt, Nathan S. Gill, Brian J. Harvey, Ashley E. Hoffman, Katharine C. Kelsey, Dominik Kulakowski, Daniel C. Laughlin, Jenna E. Morris, José F. Negrón, Katherine M. Nigro, Gregory S. Pappas, Miranda D. Redmond, Charles C. Rhoades, Monique E. Rocca, Zoe H. Schapira, Jason S. Sibold, Camille S. Stevens‐Rumann, Thomas T. Veblen, Jianmin Wang, Xiaoyang Zhang, and Sarah J. Hart
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Ecology ,Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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6. Cellular trafficking and fate mapping of cells within the nervous system after in utero hematopoietic cell transplantation
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Matthew T. Grant, Hemanth Ramesh Nelvagal, Maria Tecos, Amal Hamed, Kerry Swanson, Jonathan D. Cooper, and Jesse D. Vrecenak
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Biology (General) ,QH301-705.5 - Abstract
Abstract In utero hematopoietic cell transplantation (IUHCT) utilizes fetal immune tolerance to achieve durable chimerism without conditioning or immunosuppression during a unique window in fetal development. Though donor cells have been observed within the nervous system following in utero injection, the timeline and distribution of cellular trafficking across the blood-brain barrier following IUHCT is not well understood. We injected 20 × 106 adult bone marrow mononuclear cells intravenously at gestational age (GA) 12–17 days and found that donor cells were maximally concentrated in the brain with treatment between GA 13–14. Donor cell engraftment persisted within the brain at every timepoint analyzed and concentrated within the hindbrain with significantly more grafted cells than in the forebrain. Additionally, transplanted cells terminally differentiated into various nervous system cellular morphologies and also populated the enteric nervous system. This study is the first to document the timeline and distribution of donor cell trafficking into the immune-protected nervous system and serves as a foundation for the application of IUHCT to treat neurogenetic diseases.
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- 2024
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7. Extreme fire spread events and area burned under recent and future climate in the western USA
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Jonathan D. Coop, Sean A. Parks, Camille S. Stevens‐Rumann, Scott M. Ritter, Chad M. Hoffman, and J. Morgan Varner
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Global and Planetary Change ,Ecology ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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8. Reduced fire severity offers near-term buffer to climate-driven declines in conifer resilience across the western United States
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Kimberley T. Davis, Marcos D. Robles, Kerry B. Kemp, Philip E. Higuera, Teresa Chapman, Kerry L. Metlen, Jamie L. Peeler, Kyle C. Rodman, Travis Woolley, Robert N. Addington, Brian J. Buma, C. Alina Cansler, Michael J. Case, Brandon M. Collins, Jonathan D. Coop, Solomon Z. Dobrowski, Nathan S. Gill, Collin Haffey, Lucas B. Harris, Brian J. Harvey, Ryan D. Haugo, Matthew D. Hurteau, Dominik Kulakowski, Caitlin E. Littlefield, Lisa A. McCauley, Nicholas Povak, Kristen L. Shive, Edward Smith, Jens T. Stevens, Camille S. Stevens-Rumann, Alan H. Taylor, Alan J. Tepley, Derek J. N. Young, Robert A. Andrus, Mike A. Battaglia, Julia K. Berkey, Sebastian U. Busby, Amanda R. Carlson, Marin E. Chambers, Erich Kyle Dodson, Daniel C. Donato, William M. Downing, Paula J. Fornwalt, Joshua S. Halofsky, Ashley Hoffman, Andrés Holz, Jose M. Iniguez, Meg A. Krawchuk, Mark R. Kreider, Andrew J. Larson, Garrett W. Meigs, John Paul Roccaforte, Monica T. Rother, Hugh Safford, Michael Schaedel, Jason S. Sibold, Megan P. Singleton, Monica G. Turner, Alexandra K. Urza, Kyra D. Clark-Wolf, Larissa Yocom, Joseph B. Fontaine, and John L. Campbell
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Multidisciplinary - Abstract
Increasing fire severity and warmer, drier postfire conditions are making forests in the western United States (West) vulnerable to ecological transformation. Yet, the relative importance of and interactions between these drivers of forest change remain unresolved, particularly over upcoming decades. Here, we assess how the interactive impacts of changing climate and wildfire activity influenced conifer regeneration after 334 wildfires, using a dataset of postfire conifer regeneration from 10,230 field plots. Our findings highlight declining regeneration capacity across the West over the past four decades for the eight dominant conifer species studied. Postfire regeneration is sensitive to high-severity fire, which limits seed availability, and postfire climate, which influences seedling establishment. In the near-term, projected differences in recruitment probability between low- and high-severity fire scenarios were larger than projected climate change impacts for most species, suggesting that reductions in fire severity, and resultant impacts on seed availability, could partially offset expected climate-driven declines in postfire regeneration. Across 40 to 42% of the study area, we project postfire conifer regeneration to be likely following low-severity but not high-severity fire under future climate scenarios (2031 to 2050). However, increasingly warm, dry climate conditions are projected to eventually outweigh the influence of fire severity and seed availability. The percent of the study area considered unlikely to experience conifer regeneration, regardless of fire severity, increased from 5% in 1981 to 2000 to 26 to 31% by mid-century, highlighting a limited time window over which management actions that reduce fire severity may effectively support postfire conifer regeneration.
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- 2023
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9. Reimagine fire science for the anthropocene
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Jacquelyn K Shuman, Jennifer K Balch, Rebecca T Barnes, Philip E Higuera, Christopher I Roos, Dylan W Schwilk, E Natasha Stavros, Tirtha Banerjee, Megan M Bela, Jacob Bendix, Sandro Bertolino, Solomon Bililign, Kevin D Bladon, Paulo Brando, Robert E Breidenthal, Brian Buma, Donna Calhoun, Leila M V Carvalho, Megan E Cattau, Kaelin M Cawley, Sudeep Chandra, Melissa L Chipman, Jeanette Cobian-Iñiguez, Erin Conlisk, Jonathan D Coop, Alison Cullen, Kimberley T Davis, Archana Dayalu, Fernando De Sales, Megan Dolman, Lisa M Ellsworth, Scott Franklin, Christopher H Guiterman, Matthew Hamilton, Erin J Hanan, Winslow D Hansen, Stijn Hantson, Brian J Harvey, Andrés Holz, Tao Huang, Matthew D Hurteau, Nayani T Ilangakoon, Megan Jennings, Charles Jones, Anna Klimaszewski-Patterson, Leda N Kobziar, John Kominoski, Branko Kosovic, Meg A Krawchuk, Paul Laris, Jackson Leonard, S Marcela Loria-Salazar, Melissa Lucash, Hussam Mahmoud, Ellis Margolis, Toby Maxwell, Jessica L McCarty, David B McWethy, Rachel S Meyer, Jessica R Miesel, W Keith Moser, R Chelsea Nagy, Dev Niyogi, Hannah M Palmer, Adam Pellegrini, Benjamin Poulter, Kevin Robertson, Adrian V Rocha, Mojtaba Sadegh, Fernanda Santos, Facundo Scordo, Joseph O Sexton, A Surjalal Sharma, Alistair M S Smith, Amber J Soja, Christopher Still, Tyson Swetnam, Alexandra D Syphard, Morgan W Tingley, Ali Tohidi, Anna T Trugman, Merritt Turetsky, J Morgan Varner, Yuhang Wang, Thea Whitman, Stephanie Yelenik, Xuan Zhang, and Nelson, Karen E
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climate change ,social–ecological systems ,wildland–urban interface ,resilience ,wildfire - Abstract
Fire is an integral component of ecosystems globally and a tool that humans have harnessed for millennia. Altered fire regimes are a fundamental cause and consequence of global change, impacting people and the biophysical systems on which they depend. As part of the newly emerging Anthropocene, marked by human-caused climate change and radical changes to ecosystems, fire danger is increasing, and fires are having increasingly devastating impacts on human health, infrastructure, and ecosystem services. Increasing fire danger is a vexing problem that requires deep transdisciplinary, trans-sector, and inclusive partnerships to address. Here, we outline barriers and opportunities in the next generation of fire science and provide guidance for investment in future research. We synthesize insights needed to better address the long-standing challenges of innovation across disciplines to (i) promote coordinated research efforts; (ii) embrace different ways of knowing and knowledge generation; (iii) promote exploration of fundamental science; (iv) capitalize on the “firehose” of data for societal benefit; and (v) integrate human and natural systems into models across multiple scales. Fire science is thus at a critical transitional moment. We need to shift from observation and modeled representations of varying components of climate, people, vegetation, and fire to more integrative and predictive approaches that support pathways toward mitigating and adapting to our increasingly flammable world, including the utilization of fire for human safety and benefit. Only through overcoming institutional silos and accessing knowledge across diverse communities can we effectively undertake research that improves outcomes in our more fiery future.
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- 2022
10. Author response for 'Rocky Mountain forests are poised to recover following bark beetle outbreaks, but with altered composition'
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null Kyle C. Rodman, null Robert A. Andrus, null Amanda R. Carlson, null Trevor A. Carter, null Teresa B. Chapman, null Jonathan D. Coop, null Paula J. Fornwalt, null Nathan S. Gill, null Brian J. Harvey, null Ashley E. Hoffman, null Katharine C. Kelsey, null Dominik Kulakowski, null Daniel C. Laughlin, null Jenna E. Morris, null José F. Negrón, null Katherine M. Nigro, null Gregory S. Pappas, null Miranda D. Redmond, null Charles C. Rhoades, null Monique E. Rocca, null Zoe H. Schapira, null Jason S. Sibold, null Camille S. Stevens‐Rumann, null Thomas T. Veblen, null Jianmin Wang, null Xiaoyang Zhang, and null Sarah J. Hart
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- 2022
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11. Vegetation type conversion in the US Southwest: frontline observations and management responses
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Christopher H. Guiterman, Rachel M. Gregg, Laura A. E. Marshall, Jill J. Beckmann, Phillip J. van Mantgem, Donald A. Falk, Jon E. Keeley, Anthony C. Caprio, Jonathan D. Coop, Paula J. Fornwalt, Collin Haffey, R. Keala Hagmann, Stephen T. Jackson, Ann M. Lynch, Ellis Q. Margolis, Christopher Marks, Marc D. Meyer, Hugh Safford, Alexandra Dunya Syphard, Alan Taylor, Craig Wilcox, Dennis Carril, Carolyn A. F. Enquist, David Huffman, Jose Iniguez, Nicole A. Molinari, Christina Restaino, and Jens T. Stevens
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Forestry ,Environmental Science (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Abstract
Background Forest and nonforest ecosystems of the western United States are experiencing major transformations in response to land-use change, climate warming, and their interactive effects with wildland fire. Some ecosystems are transitioning to persistent alternative types, hereafter called “vegetation type conversion” (VTC). VTC is one of the most pressing management issues in the southwestern US, yet current strategies to intervene and address change often use trial-and-error approaches devised after the fact. To better understand how to manage VTC, we gathered managers, scientists, and practitioners from across the southwestern US to collect their experiences with VTC challenges, management responses, and outcomes. Results Participants in two workshops provided 11 descriptive case studies and 61 examples of VTC from their own field observations. These experiences demonstrate the extent and complexity of ecological reorganization across the region. High-severity fire was the predominant driver of VTC in semi-arid coniferous forests. By a large margin, these forests converted to shrubland, with fewer conversions to native or non-native herbaceous communities. Chaparral and sagebrush areas nearly always converted to non-native grasses through interactions among land use, climate, and fire. Management interventions in VTC areas most often attempted to reverse changes, although we found that these efforts cover only a small portion of high-severity burn areas undergoing VTC. Some areas incurred long (>10 years) observational periods prior to initiating interventions. Efforts to facilitate VTC were rare, but could cover large spatial areas. Conclusions Our findings underscore that type conversion is a common outcome of high-severity wildland fire in the southwestern US. Ecosystem managers are frontline observers of these far-reaching and potentially persistent changes, making their experiences valuable in further developing intervention strategies and research agendas. As its drivers increase with climate change, VTC appears increasingly likely in many ecological contexts and may require management paradigms to transition as well. Approaches to VTC potentially include developing new models of desired conditions, the use of experimentation by managers, and broader implementation of adaptive management strategies. Continuing to support and develop science-manager partnerships and peer learning groups will help to shape our response to ongoing rapid ecological transformations.
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- 2022
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12. Extent of recent fire-induced losses of ponderosa pine forests of Arizona and New Mexico, USA
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Ashley M. Woolman, Jonathan D. Coop, John D. Shaw, and Jennie DeMarco
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Forestry ,Management, Monitoring, Policy and Law ,Nature and Landscape Conservation - Published
- 2022
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13. Severe central nervous system demyelination in Sanfilippo disease
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Mahsa Taherzadeh, Erjun Zhang, Irene Londono, Benjamin De Leener, Sophie Wang, Jonathan D. Cooper, Timothy E. Kennedy, Carlos R. Morales, Zesheng Chen, Gregory A. Lodygensky, and Alexey V. Pshezhetsky
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mucopolysaccharidosis ,oligodendrocyte ,myelination ,lysosomal storage ,GM3 ganglioside ,diffusion basis spectrum imaging ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
IntroductionChronic progressive neuroinflammation is a hallmark of neurological lysosomal storage diseases, including mucopolysaccharidosis III (MPS III or Sanfilippo disease). Since neuroinflammation is linked to white matter tract pathology, we analyzed axonal myelination and white matter density in the mouse model of MPS IIIC HgsnatP304L and post-mortem brain samples of MPS III patients.MethodsBrain and spinal cord tissues of human MPS III patients, 6-month-old HgsnatP304L mice and age- and sex-matching wild type mice were analyzed by immunofluorescence to assess levels of myelin-associated proteins, primary and secondary storage materials, and levels of microgliosis. Corpus callosum (CC) region was studied by transmission electron microscopy to analyze axon myelination and morphology of oligodendrocytes and microglia. Mouse brains were analyzed ex vivo by high-filed MRI using Diffusion Basis Spectrum Imaging in Python-Diffusion tensor imaging algorithms.ResultsAnalyses of CC and spinal cord tissues by immunohistochemistry revealed substantially reduced levels of myelin-associated proteins including Myelin Basic Protein, Myelin Associated Glycoprotein, and Myelin Oligodendrocyte Glycoprotein. Furthermore, ultrastructural analyses revealed disruption of myelin sheath organization and reduced myelin thickness in the brains of MPS IIIC mice and human MPS IIIC patients compared to healthy controls. Oligodendrocytes (OLs) in the CC of MPS IIIC mice were scarce, while examination of the remaining cells revealed numerous enlarged lysosomes containing heparan sulfate, GM3 ganglioside or “zebra bodies” consistent with accumulation of lipids and myelin fragments. In addition, OLs contained swollen mitochondria with largely dissolved cristae, resembling those previously identified in the dysfunctional neurons of MPS IIIC mice. Ex vivo Diffusion Basis Spectrum Imaging revealed compelling signs of demyelination (26% increase in radial diffusivity) and tissue loss (76% increase in hindered diffusivity) in CC of MPS IIIC mice.DiscussionOur findings demonstrate an important role for white matter injury in the pathophysiology of MPS III. This study also defines specific parameters and brain regions for MRI analysis and suggests that it may become a crucial non-invasive method to evaluate disease progression and therapeutic response.
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- 2023
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14. Brain transplantation of genetically corrected Sanfilippo type B neural stem cells induces partial cross-correction of the disease
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Yewande Pearse, Don Clarke, Shih-hsin Kan, Steven Q. Le, Valentina Sanghez, Anna Luzzi, Ivy Pham, Lina R. Nih, Jonathan D. Cooper, Patricia I. Dickson, and Michelina Iacovino
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Sanfilippo type B ,MPS ,LSD ,neural progenitor cells ,cell therapy ,Genetics ,QH426-470 ,Cytology ,QH573-671 - Abstract
Sanfilippo syndrome type B (mucopolysaccharidosis type IIIB) is a recessive genetic disorder that severely affects the brain due to a deficiency in the enzyme α-N-acetylglucosaminidase (NAGLU), leading to intra-lysosomal accumulation of partially degraded heparan sulfate. There are no effective treatments for this disorder. In this project, we carried out an ex vivo correction of neural stem cells derived from Naglu−/− mice (iNSCs) induced pluripotent stem cells (iPSC) using a modified enzyme in which human NAGLU is fused to an insulin-like growth factor II receptor binding peptide in order to improve enzyme uptake. After brain transplantation of corrected iNSCs into Naglu−/− mice and long-term evaluation of their impact, we successfully detected NAGLU-IGFII activity in all transplanted animals. We found decreased lysosomal accumulation and reduced astrocytosis and microglial activation throughout transplanted brains. We also identified a novel neuropathological phenotype in untreated Naglu−/− brains with decreased levels of the neuronal marker Map2 and accumulation of synaptophysin-positive aggregates. Upon transplantation, we restored levels of Map2 expression and significantly reduced formation of synaptophysin-positive aggregates. Our findings suggest that genetically engineered iNSCs can be used to effectively deliver the missing enzyme to the brain and treat Sanfilippo type B-associated neuropathology.
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- 2022
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15. Gene therapy ameliorates spontaneous seizures associated with cortical neuron loss in a Cln2R207X mouse model
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Keigo Takahashi, Elizabeth M. Eultgen, Sophie H. Wang, Nicholas R. Rensing, Hemanth R. Nelvagal, Joshua T. Dearborn, Olivier Danos, Nicholas Buss, Mark S. Sands, Michael Wong, and Jonathan D. Cooper
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Neuroscience ,Therapeutics ,Medicine - Abstract
Although a disease-modifying therapy for classic late infantile neuronal ceroid lipofuscinosis (CLN2 disease) exists, poor understanding of cellular pathophysiology has hampered the development of more effective and persistent therapies. Here, we investigated the nature and progression of neurological and underlying neuropathological changes in Cln2R207X mice, which carry one of the most common pathogenic mutations in human patients but are yet to be fully characterized. Long-term electroencephalography recordings revealed progressive epileptiform abnormalities, including spontaneous seizures, providing a robust, quantifiable, and clinically relevant phenotype. These seizures were accompanied by the loss of multiple cortical neuron populations, including those stained for interneuron markers. Further histological analysis revealed early localized microglial activation months before neuron loss started in the thalamocortical system and spinal cord, which was accompanied by astrogliosis. This pathology was more pronounced and occurred in the cortex before the thalamus or spinal cord and differed markedly from the staging seen in mouse models of other forms of neuronal ceroid lipofuscinosis. Neonatal administration of adeno-associated virus serotype 9–mediated gene therapy ameliorated the seizure and gait phenotypes and prolonged the life span of Cln2R207X mice, attenuating most pathological changes. Our findings highlight the importance of clinically relevant outcome measures for judging preclinical efficacy of therapeutic interventions for CLN2 disease.
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- 2023
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16. Effects of chronic cannabidiol in a mouse model of naturally occurring neuroinflammation, neurodegeneration, and spontaneous seizures
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Joshua T. Dearborn, Hemanth R. Nelvagal, Nicholas R. Rensing, Keigo Takahashi, Stephanie M. Hughes, Thomas M. Wishart, Jonathan D. Cooper, Michael Wong, and Mark S. Sands
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Medicine ,Science - Abstract
Abstract Cannabidiol (CBD) has gained attention as a therapeutic agent and is purported to have immunomodulatory, neuroprotective, and anti-seizure effects. Here, we determined the effects of chronic CBD administration in a mouse model of CLN1 disease (Cln1 −/−) that simultaneously exhibits neuroinflammation, neurodegeneration, and spontaneous seizures. Proteomic analysis showed that putative CBD receptors are expressed at similar levels in the brains of Cln1 −/− mice compared to normal animals. Cln1 −/− mice received an oral dose (100 mg/kg/day) of CBD for six months and were evaluated for changes in pathological markers of disease and seizures. Chronic cannabidiol administration was well-tolerated, high levels of CBD were detected in the brain, and markers of astrocytosis and microgliosis were reduced. However, CBD had no apparent effect on seizure frequency or neuron survival. These data are consistent with CBD having immunomodulatory effects. It is possible that a higher dose of CBD could also reduce neurodegeneration and seizure frequency.
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- 2022
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17. Top-down and bottom-up propagation of disease in the neuronal ceroid lipofuscinoses
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John R. Ostergaard, Hemanth R. Nelvagal, and Jonathan D. Cooper
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neuronal ceroid lipofuscinoses ,CLN1 ,CLN3 ,connectome ,disease propagation ,neurodegeneration ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
BackgroundThe Neuronal Ceroid Lipofuscinoses (NCLs) may be considered distinct neurodegenerative disorders with separate underlying molecular causes resulting from monogenetic mutations. An alternative hypothesis is to consider the NCLs as related diseases that share lipofuscin pathobiology as the common core feature, but otherwise distinguished by different a) initial anatomic location, and b) disease propagation.MethodsWe have tested this hypothesis by comparing known differences in symptomatology and pathology of the CLN1 phenotype caused by complete loss of PPT1 function (i.e., the classical infantile form) and of the classical juvenile CLN3 phenotype. These two forms of NCL represent early onset and rapidly progressing vs. late onset and slowly progressing disease modalities respectively.ResultsDespite displaying similar pathological endpoints, the clinical phenotypes and the evidence of imaging and postmortem studies reveal strikingly different time courses and distributions of disease propagation. Data from CLN1 disease are indicative of disease propagation from the body, with early effects within the spinal cord and subsequently within the brainstem, the cerebral hemispheres, cerebellum and retina. In contrast, the retina appears to be the most vulnerable organ in CLN3, and the site where pathology is first present. Pathology subsequently is present in the occipital connectome of the CLN3 brain, followed by a top-down propagation in which cerebral and cerebellar atrophy in early adolescence is followed by involvement of the peripheral nerves in later adolescence/early twenties, with the extrapyramidal system also affected during this time course.DiscussionThe propagation of disease in these two NCLs therefore has much in common with the “Brain-first” vs. “Body-first” models of alpha-synuclein propagation in Parkinson's disease. CLN1 disease represents a “Body-first” or bottom-up disease propagation and CLN3 disease having a “Brain-first” and top-down propagation. It is noteworthy that the varied phenotypes of CLN1 disease, whether it starts in infancy (infantile form) or later in childhood (juvenile form), still fit with our proposed hypothesis of a bottom-up disease propagation in CLN1. Likewise, in protracted CLN3 disease, where both cognitive and motor declines are delayed, the initial manifestations of disease are also seen in the outer retinal layers, i.e., identical to classical Juvenile NCL disease.
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- 2022
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18. Cross-species efficacy of enzyme replacement therapy for CLN1 disease in mice and sheep
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Hemanth R. Nelvagal, Samantha L. Eaton, Sophie H. Wang, Elizabeth M. Eultgen, Keigo Takahashi, Steven Q. Le, Rachel Nesbitt, Joshua T. Dearborn, Nicholas Siano, Ana C. Puhl, Patricia I. Dickson, Gerard Thompson, Fraser Murdoch, Paul M. Brennan, Mark Gray, Stephen N. Greenhalgh, Peter Tennant, Rachael Gregson, Eddie Clutton, James Nixon, Chris Proudfoot, Stefano Guido, Simon G. Lillico, C. Bruce A. Whitelaw, Jui-Yun Lu, Sandra L. Hofmann, Sean Ekins, Mark S. Sands, Thomas M. Wishart, and Jonathan D. Cooper
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Neuroscience ,Therapeutics ,Medicine - Abstract
CLN1 disease, also called infantile neuronal ceroid lipofuscinosis (NCL) or infantile Batten disease, is a fatal neurodegenerative lysosomal storage disorder resulting from mutations in the CLN1 gene encoding the soluble lysosomal enzyme palmitoyl-protein thioesterase 1 (PPT1). Therapies for CLN1 disease have proven challenging because of the aggressive disease course and the need to treat widespread areas of the brain and spinal cord. Indeed, gene therapy has proven less effective for CLN1 disease than for other similar lysosomal enzyme deficiencies. We therefore tested the efficacy of enzyme replacement therapy (ERT) by administering monthly infusions of recombinant human PPT1 (rhPPT1) to PPT1-deficient mice (Cln1–/–) and CLN1R151X sheep to assess how to potentially scale up for translation. In Cln1–/– mice, intracerebrovascular (i.c.v.) rhPPT1 delivery was the most effective route of administration, resulting in therapeutically relevant CNS levels of PPT1 activity. rhPPT1-treated mice had improved motor function, reduced disease-associated pathology, and diminished neuronal loss. In CLN1R151X sheep, i.c.v. infusions resulted in widespread rhPPT1 distribution and positive treatment effects measured by quantitative structural MRI and neuropathology. This study demonstrates the feasibility and therapeutic efficacy of i.c.v. rhPPT1 ERT. These findings represent a key step toward clinical testing of ERT in children with CLN1 disease and highlight the importance of a cross-species approach to developing a successful treatment strategy.
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- 2022
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19. Glial Dysfunction and Its Contribution to the Pathogenesis of the Neuronal Ceroid Lipofuscinoses
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Keigo Takahashi, Hemanth R. Nelvagal, Jenny Lange, and Jonathan D. Cooper
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Batten disease ,neuronal ceroid lipofuscinosis ,astrocyte ,microglia ,oligodendrocyte ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
While significant efforts have been made in developing pre-clinical treatments for the neuronal ceroid lipofuscinoses (NCLs), many challenges still remain to bring children with NCLs a cure. Devising effective therapeutic strategies for the NCLs will require a better understanding of pathophysiology, but little is known about the mechanisms by which loss of lysosomal proteins causes such devastating neurodegeneration. Research into glial cells including astrocytes, microglia, and oligodendrocytes have revealed many of their critical functions in brain homeostasis and potential contributions to neurodegenerative diseases. Genetically modified mouse models have served as a useful platform to define the disease progression in the central nervous system across NCL subtypes, revealing a wide range of glial responses to disease. The emerging evidence of glial dysfunction questions the traditional “neuron-centric” view of NCLs, and would suggest that directly targeting glia in addition to neurons could lead to better therapeutic outcomes. This review summarizes the most up-to-date understanding of glial pathologies and their contribution to the pathogenesis of NCLs, and highlights some of the associated challenges that require further research.
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- 2022
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20. Modelling Neurological Diseases in Large Animals: Criteria for Model Selection and Clinical Assessment
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Samantha L. Eaton, Fraser Murdoch, Nina M. Rzechorzek, Gerard Thompson, Claudia Hartley, Benjamin Thomas Blacklock, Chris Proudfoot, Simon G. Lillico, Peter Tennant, Adrian Ritchie, James Nixon, Paul M. Brennan, Stefano Guido, Nadia L. Mitchell, David N. Palmer, C. Bruce A. Whitelaw, Jonathan D. Cooper, and Thomas M. Wishart
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neurological disease ,large animal model ,clinical assessment ,model selection criteria ,Cytology ,QH573-671 - Abstract
Issue: The impact of neurological disorders is recognised globally, with one in six people affected in their lifetime and few treatments to slow or halt disease progression. This is due in part to the increasing ageing population, and is confounded by the high failure rate of translation from rodent-derived therapeutics to clinically effective human neurological interventions. Improved translation is demonstrated using higher order mammals with more complex/comparable neuroanatomy. These animals effectually span this translational disparity and increase confidence in factors including routes of administration/dosing and ability to scale, such that potential therapeutics will have successful outcomes when moving to patients. Coupled with advancements in genetic engineering to produce genetically tailored models, livestock are increasingly being used to bridge this translational gap. Approach: In order to aid in standardising characterisation of such models, we provide comprehensive neurological assessment protocols designed to inform on neuroanatomical dysfunction and/or lesion(s) for large animal species. We also describe the applicability of these exams in different large animals to help provide a better understanding of the practicalities of cross species neurological disease modelling. Recommendation: We would encourage the use of these assessments as a reference framework to help standardise neurological clinical scoring of large animal models.
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- 2022
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