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Paracondylactis sinensis Carlgren, 1934 is a sea anemone with economic value in China. The wild population of P. sinensis has been shrinking due to overfishing and environmental pollution, which have caused price instability. In winter, the price of P. sinensis can reach 25 USD per kilogram. Up to now, there are no genetic markers developed for P. sinensis, preventing a further exploration of their population genetic diversity. In this study, the full-length transcriptome of P. sinensis was sequenced and microsatellite DNA markers (simple sequence repeats [SSRs]) were developed from those transcripts. A total of 52 primer pairs, which can amplify specific polymorphic bands in PCR experiments, were designed for the SSR markers. Genetic diversity and population genetics were analysed for P. sinensis populations collected from the coasts of Taizhou and Rizhao using six microsatellite DNA loci. While inbreeding was detected in both populations (Fis > 0), the overall number of alleles (Na = 11.3) and bottleneck analysis suggested that the genetic diversity of P. sinensis has not been greatly impacted. Clustering analyses using STRUCTURE, principal coordinate analysis and unweighted pair group method with arithmetic mean tree revealed that the Taizhou population diverged from the Rizhao population; however, the genetic differentiation between the populations was moderate. Human-mediated commercial activities may be the principal reasons for the gene flow between the populations. Our study provides the first evaluation of the genetic resources of wild P. sinensis populations in China, which can serve as a useful reference for future comparative studies on population genetics and may guide policy-makers in initiating strategies for germplasm conservation and artificial breeding. [ABSTRACT FROM AUTHOR]

Horseshoe crabs are famous for their blood lysate that is extensively used for the detection of bacterial endotoxin contamination in injectable drugs and medical equipment. However, their existence is now threatened because of overexploitation for bleeding. Synthetic antimicrobial peptides or proteins created by bioengineering may be effective in solving the present predicament. Factor D (FD) is a bioactive substance that shows significant sensitivity to gram-negative bacteria. However, little is known about the expansion information of FD orthologs. In the present study, a total of nine FD orthologs were detected in horseshoe crabs according to the reference genomes. The composition of the FD orthologs in different species was highly conserved, although the common ancestor of the extant horseshoe crabs dates back to the Silurian period. These data suggested that the composition of FD orthologs in horseshoe crabs was formed before the speciation of these species. Considering that three rounds of whole-genome duplication (WGD) events may expanded the homologs in horseshoe crabs, while only one pair of FD orthologs showed significant collinearity according to the intraspecies comparative analysis. Unexpectedly, tandem duplication events that occurred before speciation also expanded the FD orthologs. In addition, several separately distributed FD orthologs also showed high conservation with each other. These data revealed that transposon-mediated duplication may have expanded the FD orthologs in horseshoe crabs. Intriguingly, the C-terminus of the FD orthologs is extremely conserved, although the expansion occurred more than 400 million years ago. In summary, our research provides evidence for the duplication of FD orthologs in horseshoe crabs. Additionally, by demonstrating the conservation of the segments in the C-terminus of these duplicated orthologs, our results also contributed to understanding the functional differentiation mechanism of the diversified FD orthologs. [ABSTRACT FROM AUTHOR]