11 results on '"Heuser, Philipp"'
Search Results
2. High-resolution ex vivo analysis of the degradation and osseointegration of Mg-xGd implant screws in 3D
- Author
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Krüger, Diana, Galli, Silvia, Zeller-Plumhoff, Berit, Wieland, D.C. Florian, Peruzzi, Niccolò, Wiese, Björn, Heuser, Philipp, Moosmann, Julian, Wennerberg, Ann, and Willumeit-Römer, Regine
- Published
- 2022
- Full Text
- View/download PDF
3. Abstract: Verbesserung des 2D U-Nets für die 3D Mikrotomographie mit Synchrotronstrahlung mittels Multi-Axes Fusing
- Author
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Baltruschat, Ivo M., primary, Cwieka, Hanna, additional, Krüger, Diana, additional, Zeller-Plumhoff, Berit, additional, Schlünzen, Frank, additional, Willumeit-Römer, Regine, additional, Moosmann, Julian, additional, and Heuser, Philipp, additional
- Published
- 2022
- Full Text
- View/download PDF
4. Scaling the U-net: segmentation of biodegradable bone implants in high-resolution synchrotron radiation microtomograms
- Author
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Baltruschat, Ivo M., Ćwieka, Hanna, Krüger, Diana, Zeller-Plumhoff, Berit, Schlünzen, Frank, Willumeit-Römer, Regine, Moosmann, Julian, and Heuser, Philipp
- Published
- 2021
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- View/download PDF
5. Artificial intelligence for synchrotron-radiation tomography
- Author
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Moosmann, Julian P., primary, Kazimi, Bashir, additional, Heuser, Philipp, additional, Schlünzen, Frank, additional, Baltruschat, Ivo, additional, Kakavand, Sahar, additional, Lucas, Christian, additional, Bruns, Stefan, additional, Zeller-Plumhoff, Berit, additional, Wieland, Florian, additional, Cwieka, Hanna, additional, Flenner, Silja, additional, Greving, Imke, additional, Hammel, Jörg U., additional, and Beckmann, Felix, additional
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- 2023
- Full Text
- View/download PDF
6. The CCP4 suite: integrative software for macromolecular crystallography
- Author
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Agirre, Jon, primary, Atanasova, Mihaela, additional, Bagdonas, Haroldas, additional, Ballard, Charles B., additional, Baslé, Arnaud, additional, Beilsten-Edmands, James, additional, Borges, Rafael J., additional, Brown, David G., additional, Burgos-Mármol, J. Javier, additional, Berrisford, John M., additional, Bond, Paul S., additional, Caballero, Iracema, additional, Catapano, Lucrezia, additional, Chojnowski, Grzegorz, additional, Cook, Atlanta G., additional, Cowtan, Kevin D., additional, Croll, Tristan I., additional, Debreczeni, Judit É., additional, Devenish, Nicholas E., additional, Dodson, Eleanor J., additional, Drevon, Tarik R., additional, Emsley, Paul, additional, Evans, Gwyndaf, additional, Evans, Phil R., additional, Fando, Maria, additional, Foadi, James, additional, Fuentes-Montero, Luis, additional, Garman, Elspeth F., additional, Gerstel, Markus, additional, Gildea, Richard J., additional, Hatti, Kaushik, additional, Hekkelman, Maarten L., additional, Heuser, Philipp, additional, Hoh, Soon Wen, additional, Hough, Michael A., additional, Jenkins, Huw T., additional, Jiménez, Elisabet, additional, Joosten, Robbie P., additional, Keegan, Ronan M., additional, Keep, Nicholas, additional, Krissinel, Eugene B., additional, Kolenko, Petr, additional, Kovalevskiy, Oleg, additional, Lamzin, Victor S., additional, Lawson, David M., additional, Lebedev, Andrey A., additional, Leslie, Andrew G. W., additional, Lohkamp, Bernhard, additional, Long, Fei, additional, Malý, Martin, additional, McCoy, Airlie J., additional, McNicholas, Stuart J., additional, Medina, Ana, additional, Millán, Claudia, additional, Murray, James W., additional, Murshudov, Garib N., additional, Nicholls, Robert A., additional, Noble, Martin E. M., additional, Oeffner, Robert, additional, Pannu, Navraj S., additional, Parkhurst, James M., additional, Pearce, Nicholas, additional, Pereira, Joana, additional, Perrakis, Anastassis, additional, Powell, Harold R., additional, Read, Randy J., additional, Rigden, Daniel J., additional, Rochira, William, additional, Sammito, Massimo, additional, Sánchez Rodríguez, Filomeno, additional, Sheldrick, George M., additional, Shelley, Kathryn L., additional, Simkovic, Felix, additional, Simpkin, Adam J., additional, Skubak, Pavol, additional, Sobolev, Egor, additional, Steiner, Roberto A., additional, Stevenson, Kyle, additional, Tews, Ivo, additional, Thomas, Jens M. H., additional, Thorn, Andrea, additional, Valls, Josep Triviño, additional, Uski, Ville, additional, Usón, Isabel, additional, Vagin, Alexei, additional, Velankar, Sameer, additional, Vollmar, Melanie, additional, Walden, Helen, additional, Waterman, David, additional, Wilson, Keith S., additional, Winn, Martyn D., additional, Winter, Graeme, additional, Wojdyr, Marcin, additional, and Yamashita, Keitaro, additional
- Published
- 2023
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- View/download PDF
7. The CCP4 suite: integrative software for macromolecular crystallography
- Author
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Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B., Basle, Arnaud, Beilsten-Edmands, James, Borges, Rafael J., Brown, David G., Burgos-Marmol, J. Javier, Berrisford, John M., Bond, Paul S., Caballero, Iracema, Catapano, Lucrezia, Chojnowski, Grzegorz, Cook, Atlanta G., Cowtan, Kevin D., Croll, Tristan I., Debreczeni, Judit E., Devenish, Nicholas E., Dodson, Eleanor J., Drevon, Tarik R., Emsley, Paul, Evans, Gwyndaf, Evans, Phil R., Fando, Maria, Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F., Gerstel, Markus, Gildea, Richard J., Hatti, Kaushik, Hekkelman, Maarten L., Heuser, Philipp, Hoh, Soon Wen, Hough, Michael A., Jenkins, Huw T., Jimenez, Elisabet, Joosten, Robbie P., Keegan, Ronan M., Keep, Nicholas, Krissinel, Eugene B., Kolenko, Petr, Kovalevskiy, Oleg, Lamzin, Victor S., Lawson, David M., Lebedev, Andrey A., Leslie, Andrew G. W., Lohkamp, Bernhard, Long, Fei, Maly, Martin, McCoy, Airlie J., McNicholas, Stuart J., Medina, Ana, Millan, Claudia, Murray, James W., Murshudov, Garib N., Nicholls, Robert A., Noble, Martin E. M., Oeffner, Robert, Pannu, Navraj S., Parkhurst, James M., Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R., Read, Randy J., Rigden, Daniel J., Rochira, William, Sammito, Massimo, Rodriguez, Filomeno Sanchez, Sheldrick, George M., Shelley, Kathryn L., Simkovic, Felix, Simpkin, Adam J., Skubak, Pavol, Sobolev, Egor, Steiner, Roberto A., Stevenson, Kyle, Tews, Ivo, Thomas, Jens M. H., Thorn, Andrea, Trivino Valls, Josep, Uski, Ville, Uson, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S., Winn, Martyn D., Winter, Graeme, Wojdyr, Marcin, Yamashita, Keitaro, Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B., Basle, Arnaud, Beilsten-Edmands, James, Borges, Rafael J., Brown, David G., Burgos-Marmol, J. Javier, Berrisford, John M., Bond, Paul S., Caballero, Iracema, Catapano, Lucrezia, Chojnowski, Grzegorz, Cook, Atlanta G., Cowtan, Kevin D., Croll, Tristan I., Debreczeni, Judit E., Devenish, Nicholas E., Dodson, Eleanor J., Drevon, Tarik R., Emsley, Paul, Evans, Gwyndaf, Evans, Phil R., Fando, Maria, Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F., Gerstel, Markus, Gildea, Richard J., Hatti, Kaushik, Hekkelman, Maarten L., Heuser, Philipp, Hoh, Soon Wen, Hough, Michael A., Jenkins, Huw T., Jimenez, Elisabet, Joosten, Robbie P., Keegan, Ronan M., Keep, Nicholas, Krissinel, Eugene B., Kolenko, Petr, Kovalevskiy, Oleg, Lamzin, Victor S., Lawson, David M., Lebedev, Andrey A., Leslie, Andrew G. W., Lohkamp, Bernhard, Long, Fei, Maly, Martin, McCoy, Airlie J., McNicholas, Stuart J., Medina, Ana, Millan, Claudia, Murray, James W., Murshudov, Garib N., Nicholls, Robert A., Noble, Martin E. M., Oeffner, Robert, Pannu, Navraj S., Parkhurst, James M., Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R., Read, Randy J., Rigden, Daniel J., Rochira, William, Sammito, Massimo, Rodriguez, Filomeno Sanchez, Sheldrick, George M., Shelley, Kathryn L., Simkovic, Felix, Simpkin, Adam J., Skubak, Pavol, Sobolev, Egor, Steiner, Roberto A., Stevenson, Kyle, Tews, Ivo, Thomas, Jens M. H., Thorn, Andrea, Trivino Valls, Josep, Uski, Ville, Uson, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S., Winn, Martyn D., Winter, Graeme, Wojdyr, Marcin, and Yamashita, Keitaro
- Abstract
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective with a mission to develop, test, distribute and promote software for macromolecular crystallography. The CCP4 suite is a multiplatform collection of programs brought together by familiar execution routines, a set of common libraries and graphical interfaces. The CCP4 suite has experienced several considerable changes since its last reference article, involving new infrastructure, original programs and graphical interfaces. This article, which is intended as a general literature citation for the use of the CCP4 software suite in structure determination, will guide the reader through such transformations, offering a general overview of the new features and outlining future developments. As such, it aims to highlight the individual programs that comprise the suite and to provide the latest references to them for perusal by crystallographers around the world., Funding Agencies|Royal Society [UF160039, URF\R\221006, RGF/R1/181006]; UK Engineering and Physical Sciences Research Council (EPSRC) [EP/R513386/1]; BBSRC [BB/S007105/1, BB/S007083/1, BB/T012935/1, BB/S005099/1, BB/S007040/1]; European Union [871037]; CCP4; Medical Research Council as part of United Kingdom Research and Innovation; UK Research and Innovation: MRC [MC_UP_A025_1012]; European Molecular Biology Laboratory-European Bioinformatics Institute; German Federal Ministry of Education and Research [05K19WWA, 05K22GU5]; Deutsche Forschungsgemeinschaft [TH2135/2-1]; MEYS CR [CZ.02.1.01/0.0/0.0/16_019/0000778]; Czech Academy of Sciences [86652036]; CCP4/STFC [521862101]; iNEXT [653706]; iNEXT-Discovery [871037]; West-Life [675858]; EOSC-Life - Horizon 2020 program of the European Commission [824087]; Netherlands Organization for Scientific Research (NWO) [722.011.011, 723.013.003]; Dutch Cancer Society; Dutch Ministry of Health, Welfare and Sport; Wellcome Trust [209407/Z/17/Z]; Wellcome Trust SRF [200898]; Wellcome Centre for Cell Biology core grant [203149]; STFC-UK/CCP4: Agreement for the integration of methods into the CCP4 software distribution, ARCIMBOLDO_LOW; Spanish MICINN/AEI/FEDER/UE [PID2021-128751NB-I00]; NWOApplied Sciences and Engineering Domain; CCP4 [13337, 16219]; Rontgen Angstrom Cluster [349-2013-597]; SciLifeLab and Wallenberg Data Driven Life Science Program [KAW 2020.0239]; Dutch Research Council (NWO) [VI.Veni.192.143]; EMBO fellowship [ALTF 609-2017]; EPSRC [EP/G037280/1]; BBSRC Institute Strategic Programme Grants [BB/P012523/1, BB/P012574/1]; STFC/CCP4 [7920 S2 2020 007]
- Published
- 2023
- Full Text
- View/download PDF
8. The CCP4 suite: integrative software for macromolecular crystallography
- Author
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Royal Society (UK), Engineering and Physical Sciences Research Council (UK), European Commission, Medical Research Council (UK), Federal Ministry of Education and Research (Germany), German Research Foundation, Institute of Geology of the Czech Academy of Sciences, Netherlands Organization for Scientific Research, Dutch Cancer Society, Wellcome Trust, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B., Basle, A., Beilsten-Edmands, James, Borges, Rafael J., Brown, D. G., Burgos-Mármol, J. Javier, Berrisford, J., Bond, Paul S., Caballero, Iracema, Catapano, Lucrezia, Chojnowski, G., Cook, Atlanta G., Cowtan, K., Croll, Tristan I., Debreczeny, Judith E., Devenish, Nicholas E., Dodson, Eleanor J., Drevon, Tarik R., Emsley, Paul, Evans, Gwyndaf, Evans, Phil R., Fando, M., Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F., Gerstel, Markus, Gildea, Richard J., Hatti, Kaushik, Hekkelman, Maarten L., Heuser, Philipp, Wen Hoh, Soon, Hough, Michael A., Jenkins, Huw T., Jiménez, Elisabet, Joosten, Robbie P., Keegan, R. M., Keep, Nicholas, Krissinel, E., Kolenko, Petr, Kovalevskiy, O., Lamzin, V., Lawson, David M., Lebedev, Andrey, Leslie, A. G. W., Lohkamp, B., Long, Fei, Maly, Martin, McCoy, Airlie J., McNicholas, S., Medina, Ana, Millán, Claudia, Murray, James W., Murshudov, Garib, Nicholls, R. A., Noble, Martin E. M., Oeffner, Robert D., Pannu, Navraj S., Parkhurst, James M., Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R., Read, Randy J., Rigden, D. J., Rochira, William, Sammito, Massimo, Sánchez Rodríguez, Filomeno, Sheldrick, George M., Shelley, Kathryn L., Simkovic, Felix, Simpkin, A. J., Skubák, P., Sobolev, Egor, Steiner, Roberto A., Stevenson, Kyle, Tews, I., Thomas, J. M. H., Thorn, Andrea, Triviño, Josep, Uski, V., Usón, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S., Winn, Martyn D., Winter, Graeme, Wojdyr, M., Yamashita, Keitaro, Royal Society (UK), Engineering and Physical Sciences Research Council (UK), European Commission, Medical Research Council (UK), Federal Ministry of Education and Research (Germany), German Research Foundation, Institute of Geology of the Czech Academy of Sciences, Netherlands Organization for Scientific Research, Dutch Cancer Society, Wellcome Trust, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B., Basle, A., Beilsten-Edmands, James, Borges, Rafael J., Brown, D. G., Burgos-Mármol, J. Javier, Berrisford, J., Bond, Paul S., Caballero, Iracema, Catapano, Lucrezia, Chojnowski, G., Cook, Atlanta G., Cowtan, K., Croll, Tristan I., Debreczeny, Judith E., Devenish, Nicholas E., Dodson, Eleanor J., Drevon, Tarik R., Emsley, Paul, Evans, Gwyndaf, Evans, Phil R., Fando, M., Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F., Gerstel, Markus, Gildea, Richard J., Hatti, Kaushik, Hekkelman, Maarten L., Heuser, Philipp, Wen Hoh, Soon, Hough, Michael A., Jenkins, Huw T., Jiménez, Elisabet, Joosten, Robbie P., Keegan, R. M., Keep, Nicholas, Krissinel, E., Kolenko, Petr, Kovalevskiy, O., Lamzin, V., Lawson, David M., Lebedev, Andrey, Leslie, A. G. W., Lohkamp, B., Long, Fei, Maly, Martin, McCoy, Airlie J., McNicholas, S., Medina, Ana, Millán, Claudia, Murray, James W., Murshudov, Garib, Nicholls, R. A., Noble, Martin E. M., Oeffner, Robert D., Pannu, Navraj S., Parkhurst, James M., Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R., Read, Randy J., Rigden, D. J., Rochira, William, Sammito, Massimo, Sánchez Rodríguez, Filomeno, Sheldrick, George M., Shelley, Kathryn L., Simkovic, Felix, Simpkin, A. J., Skubák, P., Sobolev, Egor, Steiner, Roberto A., Stevenson, Kyle, Tews, I., Thomas, J. M. H., Thorn, Andrea, Triviño, Josep, Uski, V., Usón, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S., Winn, Martyn D., Winter, Graeme, Wojdyr, M., and Yamashita, Keitaro
- Abstract
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective with a mission to develop, test, distribute and promote software for macromolecular crystallography. The CCP4 suite is a multiplatform collection of programs brought together by familiar execution routines, a set of common libraries and graphical interfaces. The CCP4 suite has experienced several considerable changes since its last reference article, involving new infrastructure, original programs and graphical interfaces. This article, which is intended as a general literature citation for the use of the CCP4 software suite in structure determination, will guide the reader through such transformations, offering a general overview of the new features and outlining future developments. As such, it aims to highlight the individual programs that comprise the suite and to provide the latest references to them for perusal by crystallographers around the world.
- Published
- 2023
9. An active learning approach for the interactive and guided segmentation of tomography data
- Author
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Kazimi, Bashir, primary, Heuser, Philipp, additional, Schluenzen, Frank, additional, Cwieka, Hanna, additional, Krüger, Diana, additional, Zeller-Plumhoff, Berit, additional, Wieland, Florian, additional, Hammel, Jörg U., additional, Beckmann, Felix, additional, and Moosmann, Julian P., additional
- Published
- 2022
- Full Text
- View/download PDF
10. Co-Planning of Regional Wind Resources-based Ammonia Industry and the Electric Network: A Case Study of Inner Mongolia
- Author
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Li, Jiarong, primary, Lin, Jin, additional, Heuser, Philipp, additional, Heinrichs, Heidi, additional, Xiao, Jinyu, additional, Liu, Feng, additional, Robinius, Martin, additional, Song, Yonghua, additional, and Stolten, Detlef, additional
- Published
- 2022
- Full Text
- View/download PDF
11. High-resolution ex vivo analysis of the degradation and osseointegration of Mg-xGd implant screws in 3D.
- Author
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Krüger D, Galli S, Zeller-Plumhoff B, Wieland DCF, Peruzzi N, Wiese B, Heuser P, Moosmann J, Wennerberg A, and Willumeit-Römer R
- Abstract
Biodegradable magnesium (Mg) alloys can revolutionize osteosynthesis, because they have mechanical properties similar to those of the bone, and degrade over time, avoiding the need of removal surgery. However, they are not yet routinely applied because their degradation behavior is not fully understood. In this study we have investigated and quantified the degradation and osseointegration behavior of two biodegradable Mg alloys based on gadolinium (Gd) at high resolution. Mg-5Gd and Mg-10Gd screws were inserted in rat tibia for 4, 8 and 12 weeks. Afterward, the degradation rate and degradation homogeneity, as well as bone-to-implant interface, were studied with synchrotron radiation micro computed tomography and histology. Titanium (Ti) and polyether ether ketone (PEEK) were used as controls material to evaluate osseointegration. Our results showed that Mg-5Gd degraded faster and less homogeneously than Mg-10Gd. Both alloys gradually form a stable degradation layer at the interface and were surrounded by new bone tissue. The results were correlated to in vitro data obtained from the same material and shape. The average bone-to-implant contact of the Mg-xGd implants was comparable to that of Ti and higher than for PEEK. The results suggest that both Mg-xGd alloys are suitable as materials for bone implants., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2021 The Authors.)
- Published
- 2021
- Full Text
- View/download PDF
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