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Abstract Background Sorghum anthracnose is a major disease that hampers the productivity of the crop globally. The disease is caused by the hemibiotrophic fungal pathogen Colletotrichum sublineola. The identification of anthracnose-resistant sorghum genotypes, defining resistance loci and the underlying genes, and their introgression into adapted cultivars are crucial for enhancing productivity. In this study, we conducted field experiments on 358 diverse accessions of Ethiopian sorghum. Quantitative resistance to anthracnose was evaluated at locations characterized by a heavy natural infestation that is suitable for disease resistance screening. Results The field-based screening identified 53 accessions that were resistant across locations, while 213 accessions exhibited variable resistance against local pathotypes. Genome-wide association analysis (GWAS) was performed using disease response scores on 329 accessions and 83,861 single nucleotide polymorphisms (SNPs) generated through genotyping-by-sequencing (GBS). We identified 38 loci significantly associated with anthracnose resistance. Interestingly, a subset of these loci harbor genes encoding receptor-like kinases (RLK), nucleotide-binding leucine-rich repeats (NLRs), stress-induced antifungal tyrosine kinase that have been previously implicated in disease resistance. A SNP on chromosome 4 (S04_66140995) and two SNPs on chromosome 2 (S02_75784037, S02_2031925), localized with-in the coding region of genes that encode a putative stress-induced antifungal kinase, an F-Box protein, and Xa21-binding RLK that were strongly associated with anthracnose resistance. We also identified highly significant associations between anthracnose resistance and three SNPs linked to genes (Sobic.002G058400, Sobic.008G156600, Sobic.005G033400) encoding an orthologue of the widely known NLR protein (RPM1), Leucine Rich Repeat family protein, and Heavy Metal Associated domain-containing protein, respectively. Other SNPs linked to predicted immune response genes were also significantly associated with anthracnose resistance. Conclusions The sorghum germplasm collections used in the present study are genetically diverse. They harbor potentially useful, yet undiscovered, alleles for anthracnose resistance. This is supported by the identification of novel loci that are enriched for disease resistance regulators such as NLRs, LRKs, Xa21-binding LRK, and antifungal proteins. The genotypic data available for these accessions offer a valuable resource for sorghum breeders to effectively improve the crop. The genomic regions and candidate genes identified can be used to design markers for molecular breeding of sorghum diseases resistance.

Abstract Environmental changes pose major impacts on the performance of crop genotypes with important implications for crop improvement strategies. Hence, breeders pay attention to the effects of genotype by environment interaction (GEI) to mine genetic resources and select adapted genotypes. Twenty sorghum genotypes selected from a large collection of Ethiopian sorghum landraces and two improved varieties were evaluated using a randomized complete block design with three replications at eight locations representing different environmental conditions in Ethiopia. The study aimed at assessing GEI and identifying stable and high‐yielding genotypes of sorghum for grain yield and major agronomic traits. Analysis of variance and additive main effect and multiplicative interaction (AMMI) revealed highly significant (p ≤ 0.001) variance due to genotypes, environments, and GEI among all traits except for days to maturity. Plant height, days to maturity, panicle width, panicle weight, and grain yield were highly affected by environment and GEI, while days to flowering, panicle length, and 1000‐grain weight were mainly affected by genotypic variations. The data also suggest the importance of considering GEI in screening for high‐yielding and stable sorghum genotypes across environments. Among testing sites, Chawaka, Gute, and Uke were ideal environments for grain yield and Asosa was the most discriminative environment. Three genotypes (ETSL100808, Merera, and ETSL100474) were superior and stable across test environments for grain yield and related traits. Overall, based on mean grain yield and disease reaction, AMMI, GGE (genotype and genotype by environment interaction) biplot, and regression models, ETSL100808 was the most stable, high‐yielding, and disease‐tolerant sorghum genotype, suggesting its potential both in breeding program, as donor of traits, and for direct release as a variety.