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In Atlantic salmon, age at maturation is a life history trait governed by a sex‐specific trade‐off between reproductive success and survival. Following environmental changes across large areas of the Northeast Atlantic, many populations currently display smaller size at age and higher age at maturation. However, whether these changes reflect rapid evolution or plasticity is unknown. Approximately 1500 historical and contemporary salmon from the river Etne in Western Norway, genotyped at 50,000 SNPs, revealed three loci associated with age at maturation. These included vgll3 and six6 which collectively explained 36%–50% of the age at maturation variation in the 1983–1984 period. These two loci also displayed sex‐specific epistasis, as the effect of six6 was only detected in males bearing two copies of the late maturation allele for vgll3. Strikingly, despite allelic frequencies at vgll3 remaining unchanged, the combined influence of these genes was nearly absent in all samples from 2013 to 2016, and genome‐wide heritability strongly declined between the two time‐points. The difference in age at maturation between males and females was upheld in the population despite the loss of effect from the candidate loci, which strongly points towards additional causative mechanisms resolving the sexual conflict. Finally, because admixture with farmed escaped salmon was excluded as the origin of the observed disconnection between gene(s) and maturation age, we conclude that the environmental changes observed in the North Atlantic during the past decades have led to bypassing of the influence of vgll3 and six6 on maturation through growth‐driven plasticity. see also the Perspective by Maren Wellenreuther [ABSTRACT FROM AUTHOR]

Each year thousands of farmed Atlantic salmon escape from seawater net pens, and introgression has been documented in a range of wild populations. Due to greater experience in the wild, escapees that have been on the run for a longer period, and successfully transitioned to a wild diet (classified: "early escapees"), could potentially have a higher spawning success and contribute more to introgression than those that have been on the run for a shorter period and/or have not transitioned to a wild diet (classified: "recent escapees"). This is the first study to examine how the escape history of farmed Atlantic salmon captured in multiple rivers and coastal fisheries, varies in time and space. During 2011–2021, adult farmed escaped salmon were captured in four rivers and at six coastal sites in Norway. The level of linoleic acid, a terrestrial fatty acid high in commercial salmon feeds but low in the natural diet of wild salmon, was used to classify the farmed salmon as early or recent escapees. We observed temporal declines in the relative proportions of escaped vs. wild salmon in the catches, and the relative proportion of early vs. recent escapees in the most southern river (driven by samples from 2011 to 2015). Overall, 14% of the escaped salmon caught in the period were classified as early escapees. The relative proportion of early escapees was lower in the two southernmost rivers (21.2% and 6.30%), as compared to the coastal fisheries (40.9%) and the northernmost river (77.6%). Both aquaculture–management regulations and production strategies have likely influenced these observations. [ABSTRACT FROM AUTHOR]