30 results on '"Chamberlain, M."'
Search Results
2. Breast Tumor Metastasis and Its Microenvironment: It Takes Both Seed and Soil to Grow a Tumor and Target It for Treatment
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Bonni, Shirin, primary, Brindley, David N., additional, Chamberlain, M. Dean, additional, Daneshvar-Baghbadorani, Nima, additional, Freywald, Andrew, additional, Hemmings, Denise G., additional, Hombach-Klonisch, Sabine, additional, Klonisch, Thomas, additional, Raouf, Afshin, additional, Shemanko, Carrie Simone, additional, Topolnitska, Diana, additional, Visser, Kaitlyn, additional, Vizeacoumar, Franco J., additional, Wang, Edwin, additional, and Gibson, Spencer B., additional
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- 2024
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3. 126P Evaluation of myeloid targeting agents, PY159 and PY314, in two dose expansion phase Ib trials in platinum-resistant ovarian cancer
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Yeku, O.O., primary, Barve, M., additional, Tan, W.W., additional, Wang, J.S., additional, Patnaik, A., additional, Lorusso, P., additional, Naqash, A-R., additional, Dowlati, A., additional, Fu, S., additional, Gordon, M., additional, Hubbard, J., additional, Kummar, S., additional, Kyriakopoulos, C.E., additional, Schenk, E., additional, Deegan, D., additional, Liang, L., additional, Li, Y., additional, Reyno, L., additional, Chamberlain, M., additional, and Winer, I., additional
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- 2023
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4. Intrafractional stability of MR-guided online adaptive SBRT for prostate cancer
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Schaule, J., Chamberlain, M., Wilke, L., Baumgartl, M., Krayenbühl, J., Zamburlini, M., Mayinger, M., Andratschke, N., Tanadini-Lang, S., and Guckenberger, M.
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- 2021
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5. Reconfigurable multi-component micromachines driven by optoelectronic tweezers
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Zhang, Shuailong, Elsayed, Mohamed, Peng, Ran, Chen, Yujie, Zhang, Yanfeng, Peng, Jiaxi, Li, Weizhen, Chamberlain, M. Dean, Nikitina, Adele, Yu, Siyuan, Liu, Xinyu, Neale, Steven L., and Wheeler, Aaron R.
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- 2021
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6. PO-1607 Same-day MRI-LINAC guided single fraction radiosurgery for painful non-spine bone metastases
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Kretschmer, E., primary, Mayinger, M., additional, Chamberlain, M., additional, Weitkamp, N., additional, Ehrbar, S., additional, Bogowicz, M., additional, Wilke, L., additional, Tanadini-Lang, S., additional, Andratschke, N., additional, Guckenberger, M., additional, and Garcia, H., additional
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- 2023
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7. OC-0615 Variations in cumulative dose assessment in re-irradiation scenarios: a multi-centre evaluation
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Hardcastle, N., primary, Vasquez Osorio, E., additional, Mayo, C., additional, Jackson, A., additional, Belosi, F., additional, Chamberlain, M., additional, Thompson, C., additional, Palmer, C., additional, Solomou, N., additional, Hoffmann, L., additional, Dupuis, P., additional, Ayadi, M., additional, Muscat, S., additional, Handley, J., additional, Selby, A., additional, Rønde, H.S., additional, West, N., additional, Aarberg, A., additional, Skopidou, T., additional, Stroom, J., additional, Perez-Alija, J., additional, Popovic, M., additional, Kelly, C., additional, Michailidou, C., additional, and Appelt, A., additional
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- 2023
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8. SP-0213 The role of patient preparation strategies with real-time adaptive radiotherapy
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Chamberlain, M., primary
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- 2023
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9. Pre-concentration by liquid intake by paper (PCLIP): a new technique for large volumes and digital microfluidics
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Rackus, Darius, primary, de Campos, RichardP. S., primary, Chan, Calvin, primary, Karcz, Maria M., primary, Seale, Brendon, primary, Narahari, Tanya, primary, Dixon, Christopher, primary, Chamberlain, M. Dean, primary, and Wheeler, Aaron R., primary
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- 2023
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10. All-in-One digital microfluidics pipeline for proteomic sample preparation and analysis
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Peng, Jiaxi, primary, Chan, Calvin, additional, Zhang, Shuailong, additional, Sklavounos, Alexandros A., additional, Olson, Maxwell E., additional, Scott, Erica Y., additional, Hu, Yechen, additional, Rajesh, Vigneshwar, additional, Li, Bingyu B., additional, Chamberlain, M. Dean, additional, Zhang, Shen, additional, Peng, Hui, additional, and Wheeler, Aaron R., additional
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- 2023
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11. ACCESS datasets for CMIP6: methodology and idealised experiments
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Mackallah, C., primary, Chamberlain, M. A., additional, Law, R. M., additional, Dix, M., additional, Ziehn, T., additional, Bi, D., additional, Bodman, R., additional, Brown, J. R., additional, Dobrohotoff, P., additional, Druken, K., additional, Evans, B., additional, Harman, I. N., additional, Hayashida, H., additional, Holmes, R., additional, Kiss, A. E., additional, Lenton, A., additional, Liu, Y., additional, Marsland, S., additional, Meissner, K., additional, Menviel, L., additional, O’Farrell, S., additional, Rashid, H. A., additional, Ridzwan, S., additional, Savita, A., additional, Srbinovsky, J., additional, Sullivan, A., additional, Trenham, C., additional, Vohralik, P. F., additional, Wang, Y.-P., additional, Williams, G., additional, Woodhouse, M. T., additional, and Yeung, N., additional
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- 2022
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12. SP-0704 MR guided online adaptive RT (MRlinac)
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Chamberlain, M., primary
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- 2022
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13. The impact of COVID-19 on professional development for physiotherapists in Lagos, Nigeria.
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Obileye, Atirola A., Chamberlain, M. Anne, and O'Connor, Rory J.
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WORK environment , *ONLINE education , *MEDICAL quality control , *TEACHING methods , *CONFIDENCE , *PROFESSIONAL employee training , *RESEARCH methodology , *INTERVIEWING , *CONFERENCES & conventions , *QUALITATIVE research , *MEDICAL protocols , *LEARNING strategies , *PSYCHOSOCIAL factors , *STATISTICAL sampling , *THEMATIC analysis , *COVID-19 pandemic , *PHYSICAL therapists , *PHYSICAL therapists' attitudes , *EMAIL , *MEDICAL coding - Abstract
Background: Continuous professional development is important to maintain standards of care in the healthcare sector. However, in Lagos, Nigeria, the additional burden of COVID-19 and limited resources may provide separate challenges for physiotherapists' continuous professional development (CPD). Objectives: To examine the availability and perceived quality of continuous professional development opportunities for physiotherapists working before and during the pandemic in Lagos, Nigeria. Method: A qualitative study was conducted with 10 conveniently sampled physiotherapists, recruited via email. Interviews took place via Zoom, and the video function was utilised. Data were collected via semi-structured interviews using a pilot tested interview, and was transcribed and analysed thematically. Results: The main method of workplace teaching pre-COVID-19 and during COVID-19 was bedside teaching (BT), which most participants received. Pre-COVID-19, the main barrier to receiving teaching was a lack of national guidelines providing specific details on CPD. During COVID-19, the main barrier was the difficulty of increased online teaching instead of teaching on real life patients. The main barriers for non-workplace CPD pre-COVID-19 were a lack of availability of learning opportunities and monetary cost of conferences. This was partially combatted by the increasing trend of online learning events during the pandemic, which increased access to non-workplace learning opportunities. Conclusion: Because of COVID-19, most CPD learning opportunities for physiotherapists in Lagos, Nigeria, were online, increasing overall accessibility. Adequate training to improve utilising online learning resources as well as specific guidelines for workplace physiotherapists CPD in Nigeria should be implemented and promoted to improve confidence and quality of care. Clinical implications: Key insight into the CPD experiences of physiotherapists currently working in Lagos, Nigeria, which can guide policies and improve clinical outcomes. [ABSTRACT FROM AUTHOR]
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- 2023
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14. Australian rainfall anomalies and Indo-Pacific driver indices: links and skill in 2-year-long forecasts
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Watterson, I. G., primary, O’Kane, T. J., additional, Kitsios, V., additional, and Chamberlain, M. A., additional
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- 2021
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15. Physiotherapy in Madagascar: current challenges and opportunities for development.
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Sarobidy, Randrianaivo Rovaniaina, McIvor, Claire, Commons, Philomena, Chamberlain, M. Anne, and O'Connor, Rory J.
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HOSPITALS ,WORK environment ,MIDDLE-income countries ,SCIENTIFIC observation ,PHYSICAL therapy ,PHYSICIANS' attitudes ,INTERVIEWING ,QUALITATIVE research ,LOW-income countries ,QUESTIONNAIRES ,CLINICAL competence ,SOUND recordings ,THEMATIC analysis ,PHYSICAL therapists' attitudes ,PERSONNEL management ,MEDICAL logic - Abstract
World Health Organisation's data show that low and middle-income countries have a higher prevalence of disabilities. Madagascar is the ninth poorest country in the world. This report aims to analyse the current difficulties faced by physiotherapists and physicians working in the hospital setting, and offer recommendations for how healthcare services can develop in the future. Data were collected over the course of 3 months in the form of observational logs, interviews, and questionnaires. Interpreters were used in all interviews, and written questionnaires were translated from English to Malagasy. Thematic analysis of all data collected was completed with key themes emerging: difficult working conditions, including high patient volume and limited staff capacity or treatment space; limited recognition of physiotherapy as a profession, with no autonomy for physiotherapy staff; the low standard of clinical reasoning skills being used in practice; and variable levels of clinical competence, with little evidence of active continuing professional development or appropriate training specific to the needs of clinicians. The current practice of physiotherapy in Madagascar mirrors the challenge in low-income settings. This study highlights the ongoing needs of the profession, including increasing clinical reasoning skills, updating the physiotherapy curriculum, and further development of multidisciplinary teamwork. There are approximately 300 physiotherapists in Madagascar serving 25.5 million people in a low-income country with a high prevalence of disability. Developing the core training skills of physiotherapists in areas such as clinical reasoning skills, improved multidisciplinary team working, and access to research will allow physiotherapists to deliver a higher level of patient-centred care focused on rehabilitation. Upskilling physiotherapists and improving rehabilitation standards will result in improved functioning and quality of life for people with disabilities. Developments in multidisciplinary team communication and working will lead to interprofessional respect, improved quality of work, and a focus on patient-centred care. [ABSTRACT FROM AUTHOR]
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- 2022
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16. Delays to accessing healthcare and rehabilitation following trauma in Madagascar - a qualitative study.
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Locke, H. N., Randriamarotsiresy, V., Chamberlain, M. A., and O'Connor, R. J.
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HEALTH services accessibility ,FOCUS groups ,RESEARCH methodology ,INTERVIEWING ,POPULATION geography ,TREATMENT delay (Medicine) ,QUALITATIVE research ,RESEARCH funding ,WOUNDS & injuries ,THEMATIC analysis ,CONTENT analysis ,OUTPATIENT services in hospitals - Abstract
Purpose: To explore the factors affecting access to timely trauma care and rehabilitation in Madagascar. Materials and methods: A qualitative study based in the outpatient departments of two large rehabilitation centres. Semi-structured interviews and focus groups were conducted with 12 patients or family members and 11 healthcare professionals. Interviews and focus groups were conducted with a local interpreter and were audio-recorded and transcribed. The data were analysed deductively with thematic content analysis, utilising the Health Care Access Barriers model. Results: Participants experienced delays in deciding to seek treatment, accessing healthcare facilities and in receiving appropriate treatment. Cognitive barriers included understanding and awareness of healthcare, structural barriers included distance and transportation to health facilities, financial barriers included affordability of healthcare and difficulty accessing funds. Conclusions: Delays to accessing healthcare may result in increased mortality and disability following trauma, as well as increased financial burden. Addressing the acceptability of services should be a focus for future service development, through training and education schemes. More importantly, improving both physical and financial accessibility of services must be a long-term priority. These findings may help to guide the ongoing development of trauma and rehabilitation pathways in Madagascar. [ABSTRACT FROM AUTHOR]
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- 2021
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17. The septin cytoskeleton is required for plasma membrane repair.
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Prislusky MI, Lam JGT, Contreras VR, Ng M, Chamberlain M, Pathak-Sharma S, Fields M, Zhang X, Amer AO, and Seveau S
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- Humans, Nonmuscle Myosin Type IIA metabolism, Nonmuscle Myosin Type IIA genetics, HeLa Cells, Calcium metabolism, S100 Proteins metabolism, S100 Proteins genetics, Cell Cycle Proteins metabolism, Cell Cycle Proteins genetics, Septins metabolism, Septins genetics, Annexin A2 metabolism, Annexin A2 genetics, Cell Membrane metabolism, Cytoskeleton metabolism, Actins metabolism
- Abstract
Plasma membrane repair is a fundamental homeostatic process of eukaryotic cells. Here, we report a new function for the conserved cytoskeletal proteins known as septins in the repair of cells perforated by pore-forming toxins or mechanical disruption. Using a silencing RNA screen, we identified known repair factors (e.g. annexin A2, ANXA2) and novel factors such as septin 7 (SEPT7) that is essential for septin assembly. Upon plasma membrane injury, the septin cytoskeleton is extensively redistributed to form submembranous domains arranged as knob and loop structures containing F-actin, myosin IIA, S100A11, and ANXA2. Formation of these domains is Ca
2+ -dependent and correlates with plasma membrane repair efficiency. Super-resolution microscopy revealed that septins and F-actin form intertwined filaments associated with ANXA2. Depletion of SEPT7 prevented ANXA2 recruitment and formation of submembranous actomyosin domains. However, ANXA2 depletion had no effect on domain formation. Collectively, our data support a novel septin-based mechanism for resealing damaged cells, in which the septin cytoskeleton plays a key structural role in remodeling the plasma membrane by promoting the formation of SEPT/F-actin/myosin IIA/ANXA2/S100A11 repair domains., (© 2024. The Author(s).)- Published
- 2024
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18. Spontaneous Osteomyelitis and Intraosseous Abscess: A Case Report.
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Chamberlain M and Sarkisian SA
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Introduction: Acute hematogenous osteomyelitis may have significant morbidity and mortality if undiagnosed. Because it is uncommon in developed countries and has variable presentations, the patient may undergo several healthcare visits prior to diagnosis., Case Report: We report the case of a 9-year-old male who presented with hip and knee pain with associated fevers and was found to have osteomyelitis and intraosseous abscess in the diaphysis of the right femur. He had multiple emergency department and outpatient visits before the ultimate diagnosis was made. He was treated with irrigation and debridement in addition to intravenous antibiotics., Conclusion: Pediatric acute hematogenous osteomyelitis can have subtle presentations, and this case illustrates some of the difficulties in making the diagnosis. This condition should be considered in the workup of a child with undifferentiated fever, pain, or decrease in mobility., Competing Interests: Conflicts of Interest: By the CPC-EM article submission agreement, all authors are required to disclose all affiliations, funding sources and financial or management relationships that could be perceived as potential sources of bias. The authors disclosed none.
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- 2024
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19. The effects of verbal cues on EMG activity during a quadriceps setting exercise.
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Frerichs C, DeHope J, Chamberlain M, Bassett D, Farmer B, Kyvelidou A, Magrini M, and Grindstaff TL
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Context: A quadriceps setting (quad set) exercise is commonly utilized following knee injury, but there is great variation in cues that clinicians provide to patients when performing the exercise., Objectives: To determine if internal, external, or visual cues results in the greatest quadriceps electromyographical (EMG) activity during a quadriceps setting exercise in healthy individuals., Design: Descriptive laboratory study., Setting: University research laboratory., Participants: Thirty healthy individuals volunteered for this study. Participants were given one of five cues in a randomized order: internal cue "tighten your thigh muscles," internal cue "push your knee down," external cue "push into the bolster," external cue "push into the strap," or visual biofeedback using the cue "raise the value on the screen as high as you can.", Main Outcome Measures: Normalized vastus lateralis EMG activity., Results: Both visual biofeedback (83.2±24.9%) and "press into the strap" (76.8±24.4%) produced significantly greater (p< 0.001) EMG activity than the push knee down (53.2±27.0%), tighten thigh (52.7±27.3%), or push into the bolster (50.8±26.3) conditions. There was no significant difference (p= 0.10) between the visual biofeedback and "press into the strap" conditions as well as no significant difference (p> 0.38) between the push knee down, tighten thigh, or push into the bolster conditions., Conclusions: If the clinical aim during a quadriceps setting exercise is to obtain the greatest volitional muscle recruitment, the use of visual biofeedback or pressing into a strap is recommended.
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- 2024
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20. Safety and efficacy of an allogeneic adipose-derived mesenchymal stem cell preparation in the treatment of knee osteoarthritis: A Phase I/IIa randomised controlled trial.
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Freitag J, Chamberlain M, Wickham J, Shah K, Cicuttini F, Wang Y, and Solterbeck A
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Objectives: To assess the safety and efficacy of an allogeneic adipose-derived mesenchymal stem cell preparation (MAG200) in the treatment of knee osteoarthritis over 12 months., Design: A single-centre, double-blind, ascending dose, randomised controlled trial. 40 participants with moderate knee osteoarthritis were randomised to receive a single intra-articular injection of MAG200 (dose cohorts:10, 20, 50, 100 × 10
6 cells) or placebo. Primary objectives were safety and efficacy according to a compound responder analysis of minimal clinically important difference in pain (numerical pain rating scale [NPRS]) and function (Knee Injury and Osteoarthritis Outcome Score - Function in Daily Living subscale [KOOSADL ]) at month 12. Secondary efficacy outcomes included changes from baseline in patient reported outcome measures and evaluation of disease-modification using quantitative MRI., Results: Treatment was well tolerated with no treatment-related serious adverse events. MAG200 cohorts reported a greater proportion of responders than placebo and demonstrated clinical and statistically significant improvement in pain and clinically relevant improvement in all KOOS subscales. MAG200 demonstrated a reproducible treatment effect over placebo, which was clinically relevant for pain in the 10 × 106 dose cohort (mean difference NPRS:-2.25[95%CI:-4.47,-0.03, p = 0.0468]) and for function in the 20 × 106 and 100 × 106 dose cohorts (mean difference KOOSADL :10.12[95%CI:-1.51,21.76, p = 0.0863] and 10.81[95%CI:-1.42,23.04, p = 0.0810] respectively). A trend in disease-modification was observed with improvement in total knee cartilage volume in MAG200 10, 20, and 100 × 106 dose cohorts, with progression of osteoarthritis in placebo, though this was not statistically significant. No clear dose response was observed., Conclusion: This early-phase study provides supportive safety and efficacy evidence to progress MAG200 to later-stage trial development., Trial Registration: ACTRN12617001095358/ACTRN12621000622808., Competing Interests: JF is the Chief Medical Officer of Magellan Stem Cells Pty Ltd, holds stocks or options in Magellan Stem Cells Pty Ltd and is the Current Chair of the Magellan Stem Cells Medical and Scientific Advisory Board. MC declares no conflicts of interest. JW declares no conflicts of interest. KS is an employee of Magellan Stem Cells Pty Ltd. YW is the recipient of National Health and Medical Research Council of Australia Translating Research into Practice Fellowship (APP1168185). AS declares no conflicts of interest. FMC is the recipient of Investigator Grant from the National Health and Medical Research Council of Australia and reports receipt of institutional payment from Magellan Stem Cells Pty Ltd for undertaking the MRI measurements., (© 2024 Magellan Stem Cells.)- Published
- 2024
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21. A Qualitative Systematic Review of the Barriers and Facilitators of the Reintegration of Men Convicted of a Sexual Offense From Prison or Secure Care into the Community.
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Tuschick E, Carthy N, Wager N, and Chamberlain M
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This article is the first qualitative systematic review of studies examining the barriers and facilitators to male sex offenders reintegration from prison or secure care into the community. A search of 16 electronic databases produced 14,218 potential sources, which, after screening, resulted in 79 articles for inclusion. Papers were included if they used qualitative research methods about the barriers, facilitators, perceptions, experiences, and attitudes toward community reintegration from prison or secure care for men convicted of sexual offenses. Included papers were critically appraised and the findings were thematically synthesized. The findings identified that formal and cultural aspects of reintegration, such as probation services, stigmatization, and registration, were the three largest barriers that men faced upon their release, with stability aspects, such as positive relationships, religion, and support groups, being key facilitators to their successful reintegration. The implications for future research, and policy and practice, including prioritizing risk assessment and management, offering appropriate and timely treatment and rehabilitation, educating the community, better access to housing and employment, and services adopting a collaborative approach, are discussed., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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22. A phase 1b open-label study to evaluate the safety, tolerability, pharmacokinetics, and pharmacodynamics of py314 in combination with pembrolizumab in patients with advanced renal cell carcinoma.
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Beckermann KE, Patnaik A, Winer I, Tan W, Bashir B, Kyriakopoulos CE, Sweis RF, Chamberlain M, and Rini BI
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- Humans, Male, Aged, Female, Neoplasm Recurrence, Local drug therapy, Antibodies, Monoclonal, Humanized therapeutic use, Tumor Microenvironment, Carcinoma, Renal Cell drug therapy, Kidney Neoplasms drug therapy
- Abstract
Checkpoint inhibition (CPI) is a standard therapeutic approach in metastatic renal cell carcinoma (RCC). However, not all patients respond to CPI, and the immune suppressive characteristics of the RCC tumor microenvironment may contribute to treatment failure. Triggering Receptor Expressed on Myeloid Cells-2 (TREM2) is a transmembrane protein expressed on a subset of myeloid cells with M2-like anti-inflammatory properties that has previously been associated with disease recurrence after nephrectomy and poor outcomes when expressed at high levels. PY314 is a humanized monoclonal antibody targeting TREM2 that depletes tumor-associated macrophages. In this study, the combination of PY314 and pembrolizumab was investigated in patients with CPI-refractory RCC. Eligible patients had clear cell RCC with disease progression on prior CPI either in combination or sequentially with VEGF-TKI. Patients were treated with PY314 10 mg/kg in combination with pembrolizumab 200 mg IV every 21 days. The primary objective was to assess safety and tolerability and secondary objectives included pharmacokinetics and anti-tumor activity by RECIST v1.1. Seventeen patients were enrolled with a median age of 67 years, 82% male, 100% had prior CPI, and 76% had received three or more prior lines of therapy. The combination of PY314 and pembrolizumab demonstrated an acceptable safety profile with 47.1% any grade treatment-related adverse events (AE) (including only 5.9% grade ≥ 3), the most common being fatigue, pyrexia, nausea, and infusion-related reactions. One patient achieved a partial response (6%), and four patients had stable disease (24%) as their best response. The median PFS was 1.4 months (95% CI 1.2- 3.8). The combination of PY314 and pembrolizumab was safe, but the limited anti-tumor effect observed suggests that TREM2 targeting in conjunction with PD-1 blockade may not overcome resistance to prior CPI. Further investigation is warranted to determine if improved efficacy can be achieved in IO-naïve settings. Trial Registration: NCT04691375., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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23. What's the rumpus? Resident temperate forest birds approach an unfamiliar neotropical alarm call across three continents.
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Dominguez JS, Rakovic M, Li D, Pollock HS, Lawson S, Novcic I, Su X, Zeng Q, Al-Dhufari R, Johnson-Cadle S, Boldrick J, Chamberlain M, and Hauber ME
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- Animals, Phylogeny, Forests, Predatory Behavior, Vocalization, Animal physiology, Passeriformes physiology
- Abstract
Alarm signals have evolved to communicate pertinent threats to conspecifics, but heterospecifics may also use alarm calls to obtain social information. In birds, mixed-species flocks are often structured around focal sentinel species, which produce reliable alarm calls that inform eavesdropping heterospecifics about predation risk. Prior research has shown that Neotropical species innately recognize the alarm calls of a Nearctic sentinel species, but it remains unclear how generalizable or consistent such innate signal recognition of alarm-calling species is. We tested for the responses to the alarm calls of a Neotropical sentinel forest bird species, the dusky-throated antshrike ( Thamnomanes ardesiacus ), by naive resident temperate forest birds across three continents during the winter season. At all three sites, we found that approaches to the Neotropical antshrike alarm calls were similarly frequent to the alarm calls of a local parid sentinel species (positive control), while approaches to the antshrike's songs and to non-threatening columbid calls (negative controls) occurred significantly less often. Although we only tested one sentinel species, our findings indicate that temperate forest birds can recognize and adaptively respond globally to a foreign and unfamiliar tropical alarm call, and suggest that some avian alarm calls transcend phylogenetic histories and individual ecological experiences.
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- 2023
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24. Peaks, pores, and dragon eggs: Uncovering and quantifying the heterogeneity of treatment wetland biofilm matrices.
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Farooq AJ, Chamberlain M, Poonja A, Mumford KG, Wallace S, and Weber KP
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- Extracellular Polymeric Substance Matrix, Wastewater, Biofilms, Wetlands, Environmental Pollutants
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Biofilms serve to house diverse microbial communities, which are responsible for the majority of wastewater constituent degradation and transformation in treatment wetlands (TWs). TW biofilm has been generally conceptualized as a relatively uniform film covering available surfaces. However, no studies attaining direct visual 3D representations of biofilm morphology have been conducted. This study focuses on imaging the morphology of detached, gravel-associated, and rhizospheric (Phalaris arundinacea) biofilms from subsurface TW mesocosms. Images obtained through both traditional light microscopy, environmental scanning electron microscopy (E-SEM) and Wet-SEM revealed that TW biofilms are structurally heterogeneous ranging from corrugated films to clusters of aggregates. Features such as water channels and pores were observed suggesting that pollutant transport inside biofilms is complex, and that the interfacial surface area between water and biofilm is much larger than previously understood. Biofilm thickness generally ranged between 170 and 240 μm, with internal biofilm porosities estimated as 34 ± 10 %, reaching a maximum of 50 %. Internal biofilm matrix pore diameters ranged from 1 to 205.2 μm, with a distribution that favored pores and channels smaller than 10 μm, and a mean equivalent spherical diameter of 8.6 μm. Based on the large variation in pore and channel sizes it is expected that a variety of flow regimes and therefore pollutant dynamics are likely to occur inside TW biofilm matrices. Based on the visual evidence and analysis, a new conceptual model was created to reflect the microscale TW biofilm dynamics and morphology. This new conceptual model will serve to inform future biokinetic modelling, microscale hydrology, microbial community assessment, and pollutant treatment studies., Competing Interests: Declaration of competing interest The authors declare no competing financial interest., (Copyright © 2022 Elsevier B.V. All rights reserved.)
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- 2023
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25. MR-guided beam gating: Residual motion, gating efficiency and dose reconstruction for stereotactic treatments of the liver and lung.
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Ehrbar S, Braga Käser S, Chamberlain M, Krayenbühl J, Wilke L, Mayinger M, Garcia Schüler H, Guckenberger M, Andratschke N, and Tanadini-Lang S
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- Humans, Liver diagnostic imaging, Lung, Radiometry, Radiotherapy Dosage, Radiotherapy Planning, Computer-Assisted methods, Radiosurgery methods, Radiotherapy, Intensity-Modulated methods
- Abstract
Purpose: This study aims to investigate the efficiency and the geometric as well as the dosimetric benefit of magnetic-resonance guided beam gating for stereotactic treatments in moving organs., Method: Patients treated with MR-guided (MRIdian system) SBRT for lung (n = 10) and liver (n = 10) targets were analyzed. Breath-hold gating was performed based on lesion tracking in sagittal cine MRI images. The target offset from the geometric center of the gating window with and without gating was evaluated. A dose reconstruction workflow based on convolution of these 2D position-probability maps and the daily 3D dose distribution was used to estimate the daily delivered dose including motion. The dose to the clinical target volume (CTV) and to a 2-cm ring structure around the planning target volume were evaluated., Results: The applied gating protocol resulted in a mean (±standard deviation) gating efficiency of 55%±16%. Over all patients, the mean target offset (2D-root-mean-square error) was 8.3 ± 4.3 mm, which reduced to 2.4 ± 0.6 mm during gating. The dose reconstruction showed a mean deviation in CTV coverage (D95) from the static plans of -1.7%±1.8% with gating and -12.0%±8.4% if no gating would have been used. The mean dose (Dmean) in the ring structure, with respect to the static plans, showed mean deviations of -0.1%±0.3% with gating and -1.6%±1.8% without gating., Conclusion: The MRIdian system enables gating based on the inner anatomy and the implemented dose reconstruction workflow demonstrated geometric robust delivery of the planned radiation doses., (Copyright © 2022 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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26. Metabolomic Analysis of Lactobacillus acidophilus, L. gasseri, L. crispatus , and Lacticaseibacillus rhamnosus Strains in the Presence of Pomegranate Extract.
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Chamberlain M, O'Flaherty S, Cobián N, and Barrangou R
- Abstract
Lactobacillus species are prominent inhabitants of the human gastrointestinal tract that contribute to maintaining a balanced microbial environment that positively influences host health. These bacterial populations can be altered through use of probiotic supplements or via dietary changes which in turn affect the host health. Utilizing polyphenolic compounds to selectively stimulate the growth of commensal bacteria can have a positive effect on the host through the production of numerous metabolites that are biologically active. Four Lactobacillus strains were grown in the presence of pomegranate (POM) extract. Two strains, namely, L. acidophilus NCFM and L. rhamnosus GG, are commonly used probiotics, while the other two strains, namely, L. crispatus NCK1351 and L. gasseri NCK1342, exhibit probiotic potential. To compare and contrast the impact of POM on the strains' metabolic capacity, we investigated the growth of the strains with and without the presence of POM and identified their carbohydrate utilization and enzyme activity profiles. To further investigate the differences between strains, an untargeted metabolomic approach was utilized to quantitatively and qualitatively define the metabolite profiles of these strains. Several metabolites were produced significantly and/or exclusively in some of the strains, including mevalonate, glutamine, 5-aminoimidazole-4-carboxamide, phenyllactate, and fumarate. The production of numerous discrete compounds illustrates the unique characteristics of and diversity between strains. Unraveling these differences is essential to understand the probiotic function and help inform strain selection for commercial product formulation., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Chamberlain, O'Flaherty, Cobián and Barrangou.)
- Published
- 2022
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27. Single-isocenter versus multiple-isocenters for multiple lung metastases: Evaluation of lung dose.
- Author
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van Timmeren JE, Ehrbar S, Chamberlain M, Mayinger M, Hoogeman MS, Andratschke N, Guckenberger M, and Tanadini-Lang S
- Subjects
- Humans, Lung diagnostic imaging, Lung pathology, Radiotherapy Dosage, Radiotherapy Planning, Computer-Assisted methods, Lung Neoplasms diagnostic imaging, Lung Neoplasms pathology, Lung Neoplasms radiotherapy, Radiosurgery methods, Radiotherapy, Intensity-Modulated methods
- Abstract
Background and Purpose: A potential challenge in single-isocenter multi-lesion lung stereotactic body radiotherapy (SBRT) is that patient positioning is not based on each lesion individually, but on the average position of all lesions. This may lead to larger margins compared to treating with one isocenter per lesion, but increases workflow efficiency. The aim of this study was to investigate whether a single-isocenter technique leads to increased normal lung dose compared to a conventional multiple-isocenters technique., Materials and Methods: A cohort of 15 NSCLC patients with two or three lesions previously treated with SBRT was subjected to treatment planning with a multiple-isocenter technique and a single-isocenter technique. For the latter, two margin approaches were evaluated: (1) identical margins for each internal target volume (ITV), assuming an average registration for all lesions in cone-beam CT (CBCT) positioning verification and (2) a smaller margin for the largest lesion, assuming an optimal registration for that lesion. For all 45 treatment plans, mean lung dose (MLD) and lungs-V
20Gy were evaluated. The study was performed following RATING guidelines., Results: The MLD was 4.9 ± 1.9 Gy (mean ± SD) for multiple-isocenters and 5.4 ± 2.1 Gy and 5.3 ± 2.2 Gy for single-isocenter approach 1 and 2, respectively. V20Gy was 5.5 ± 3.7%, 5.5 ± 3.2% and 5.4 ± 3.3%. A median [range] increase in MLD of 11.6% [-14.9 - 26.8] was observed when comparing single-isocenter treatment plans to those with multiple isocenters. V20Gy increased by 0.2 [-3.4 - 1.3] percentage points., Conclusion: A single-isocenter SBRT technique for lung patients with multiple targets results in clinically acceptable increases in normal lung dose., Competing Interests: Conflict of interest statement Dr. Hoogeman reports grants from Elekta, grants from Accuray, grants from Varian, other from Accuray, outside the submitted work. Dr. Tanadini-Lang reports that her husband works at Varian Medical Systems. Dr. van Timmeren, dr. Ehrbar, miss Chamberlain, dr. Mayinger, dr. Andratschke and dr. Guckenberger report no conflict of interest., (Copyright © 2021 The Author(s). Published by Elsevier B.V. All rights reserved.)- Published
- 2022
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28. Head and neck radiotherapy on the MR linac: a multicenter planning challenge amongst MRIdian platform users.
- Author
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Chamberlain M, Krayenbuehl J, van Timmeren JE, Wilke L, Andratschke N, Garcia Schüler H, Tanadini-Lang S, Guckenberger M, and Balermpas P
- Subjects
- Humans, Organs at Risk, Particle Accelerators, Radiotherapy Dosage, Radiotherapy Planning, Computer-Assisted methods, Radiotherapy, Intensity-Modulated methods
- Abstract
Purpose: Purpose of this study is to evaluate plan quality on the MRIdian (Viewray Inc., Oakwood Village, OH, USA) system for head and neck cancer (HNC) through comparison of planning approaches of several centers., Methods: A total of 14 planners using the MRIdian planning system participated in this treatment challenge, centrally organized by ViewRay, for one contoured case of oropharyngeal carcinoma with standard constraints for organs at risk (OAR). Homogeneity, conformity, sparing of OARs, and other parameters were evaluated according to The International Commission on Radiation Units and Measurements (ICRU) recommendations anonymously, and then compared between centers. Differences amongst centers were assessed by means of Wilcoxon test. Each plan had to fulfil hard constraints based on dose-volume histogram (DVH) parameters and delivery time. A plan quality metric (PQM) was evaluated. The PQM was defined as the sum of 16 submetrics characterizing different DVH goals., Results: For most dose parameters the median score of all centers was higher than the threshold that results in an ideal score. Six participants achieved the maximum number of points for the OAR dose parameters, and none had an unacceptable performance on any of the metrics. Each planner was able to achieve all the requirements except for one which exceeded delivery time. The number of segments correlated to improved PQM and inversely correlated to brainstem D
0.1cc and to Planning Target Volume1 (PTV) D0.1cc . Total planning experience inversely correlated to spinal canal dose., Conclusion: Magnetic Resonance Image (MRI) linac-based planning for HNC is already feasible with good quality. Generally, an increased number of segments and increasing planning experience are able to provide better results regarding planning quality without significantly prolonging overall treatment time., (© 2021. The Author(s).)- Published
- 2021
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29. Operating procedures, risk management and challenges during implementation of adaptive and non-adaptive MR-guided radiotherapy: 1-year single-center experience.
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Garcia Schüler HI, Pavic M, Mayinger M, Weitkamp N, Chamberlain M, Reiner C, Linsenmeier C, Balermpas P, Krayenbühl J, Guckenberger M, Baumgartl M, Wilke L, Tanadini-Lang S, and Andratschke N
- Subjects
- Adult, Aged, Aged, 80 and over, Combined Modality Therapy, Female, Humans, Male, Middle Aged, Neoplasms radiotherapy, Neoplasms surgery, Organs at Risk radiation effects, Prognosis, Radiotherapy Dosage, Radiotherapy, Intensity-Modulated methods, Re-Irradiation, Retrospective Studies, Risk Management, Health Plan Implementation, Neoplasms pathology, Patient Selection, Quality Assurance, Health Care standards, Radiosurgery methods, Radiotherapy Planning, Computer-Assisted methods, Radiotherapy, Image-Guided methods
- Abstract
Background: Main purpose was to describe procedures and identify challenges in the implementation process of adaptive and non-adaptive MR-guided radiotherapy (MRgRT), especially new risks in workflow due to the new technique. We herein report the single center experience for the implementation of (MRgRT) and present an overview on our treatment practice., Methods: Descriptive statistics were used to summarize clinical and technical characteristics of treatment and patient characteristics including sites treated between April 2019 and end of March 2020 after ethical approval. A risk analysis was performed to identify risks of the online adaptive workflow., Results: A summary of the processes on the MR-Linac including workflows, quality assurance and possible pitfalls is presented. 111 patients with 124 courses were treated during the first year of MR-guided radiotherapy. The most commonly treated site was the abdomen (42% of all treatment courses). 73% of the courses were daily online adapted and a high number of treatment courses (75%) were treated with stereotactic body irradiation. Only 4/382 fractions could not be treated due to a failing online adaptive quality assurance. In the risk analysis for errors, the two risks with the highest risk priority number were both in the contouring category, making it the most critical step in the workflow., Conclusion: Although challenging, establishment of MRgRT as a routinely used technique at our department was successful for all sites and daily o-ART was feasible from the first day on. However, ongoing research and reports will have to inform us on the optimal indications for MRgRT because careful patient selection is necessary as it continues to be a time-consuming treatment technique with restricted availability. After risk analysis, the most critical workflow category was the contouring process, which resembles the need of experienced staff and safety check paths., (© 2021. The Author(s).)
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- 2021
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30. MR-Guided Adaptive Radiotherapy for Head and Neck Cancer: Prospective Evaluation of Migration and Anatomical Changes of the Major Salivary Glands.
- Author
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van Timmeren JE, Chamberlain M, Bogowicz M, Ehrbar S, Dal Bello R, Garcia Schüler H, Krayenbuehl J, Wilke L, Andratschke N, Guckenberger M, Tanadini-Lang S, and Balermpas P
- Abstract
The aim of this study was to quantify anatomical changes of parotids and submandibular glands and evaluate potential dosimetric advantages during weekly adaptive MR-guided radiotherapy (MRgRT) for the definitive treatment of head and neck cancer (HNC). The data and plans of 12 patients treated with bilateral intensity-modulated radiotherapy for HNC using MR-linac, with weekly offline adaptations, were prospectively evaluated. The positional and volumetric changes of the salivary glands were analyzed by manual segmentation in weekly MRI images and the dosimetric impact of these anatomical changes on the adapted treatment plans was assessed. The mean volume change in parotid and submandibular gland volume was -31.9% ( p < 0.0001) and -29.7% ( p < 0.0001) after five weeks, respectively. The volume change was significantly correlated with the cumulative dose for the respective gland at the time of volume measurement. Inter-parotid distance changed by -5.4% (6.5 mm) on average after five weeks ( p = 0.0005). The distance became significantly smaller only in the left-right direction. The inter-submandibular gland distance changed by 0.7 mm ( p = 0.38). This study demonstrated significant changes in salivary gland volumes and position following daily MR guidance and weekly plan adaptation. Ongoing clinical trials will provide data on the clinical impact of these changes and novel MR-based adaptation strategies.
- Published
- 2021
- Full Text
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