24 results on '"Bennike, Ole"'
Search Results
2. Submarine lateglacial lake deposits from jutland bank, the north sea
- Author
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Bennike, Ole, Odgaard, Bent, Wiberg-Larsen, Peter, and Nørgaard-Pedersen, Niels
- Published
- 2023
- Full Text
- View/download PDF
3. Rapid ice sheet response to deglacial and Holocene paleoenvironmental changes in eastern Prydz Bay, East Antarctica
- Author
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White, Duanne A., Fink, David, Lilly, Kat, O'Brien, Phil, Dorschel, Boris, Berg, Sonja, Bennike, Ole, Gore, Damian B., Fabel, Derek, Blaxell, Marcello, Jeromson, Matt, Codilean, Alexandru T., Wilken, Klaus M., Galton-Fenzi, Ben, and Wagner, Bernd
- Published
- 2022
- Full Text
- View/download PDF
4. Advancing responsible genomic analyses of ancient mollusc shells
- Author
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Martin-Roy, Raphaël, Thyrring, Jakob, Mata, Xavier, Bangsgaard, Pernille, Bennike, Ole, Christiansen, Gunvor, Funder, Svend, Gotfredsen, Anne Birgitte, Gregersen, Kristian Murphy, Hansen, Camilla Haarby, Ilsøe, Peter Carsten, Klassen, Lutz, Kristensen, Inge Kjær, Ravnholt, Gerd Bindesbøl, Marin, Frédéric, Der Sarkissian, Clio, Martin-Roy, Raphaël, Thyrring, Jakob, Mata, Xavier, Bangsgaard, Pernille, Bennike, Ole, Christiansen, Gunvor, Funder, Svend, Gotfredsen, Anne Birgitte, Gregersen, Kristian Murphy, Hansen, Camilla Haarby, Ilsøe, Peter Carsten, Klassen, Lutz, Kristensen, Inge Kjær, Ravnholt, Gerd Bindesbøl, Marin, Frédéric, and Der Sarkissian, Clio
- Abstract
The analysis of the DNA entrapped in ancient shells of molluscs has the potential to shed light on the evolution and ecology of this very diverse phylum. Ancient genomics could help reconstruct the responses of molluscs to past climate change, pollution, and human subsistence practices at unprecedented temporal resolutions. Applications are however still in their infancy, partly due to our limited knowledge of DNA preservation in calcium carbonate shells and the need for optimized methods for responsible genomic data generation. To improve ancient shell genomic analyses, we applied high-throughput DNA sequencing to 27 Mytilus mussel shells dated to ~111–6500 years Before Present, and investigated the impact, on DNA recovery, of shell imaging, DNA extraction protocols and shell sub-sampling strategies. First, we detected no quantitative or qualitative deleterious effect of micro-computed tomography for recording shell 3D morphological information prior to sub-sampling. Then, we showed that double-digestion and bleach treatment of shell powder prior to silica-based DNA extraction improves shell DNA recovery, also suggesting that DNA is protected in preservation niches within ancient shells. Finally, all layers that compose Mytilus shells, i.e., the nacreous (aragonite) and prismatic (calcite) carbonate layers, with or without the outer organic layer (periostracum) proved to be valuable DNA reservoirs, with aragonite appearing as the best substrate for genomic analyses. Our work contributes to the understanding of long-term molecular preservation in biominerals and we anticipate that resulting recommendations will be helpful for future efficient and responsible genomic analyses of ancient mollusc shells.
- Published
- 2024
5. Vittrup Man–The life-history of a genetic foreigner in Neolithic Denmark
- Author
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Fischer, Anders, Sjögren, Karl-Göran, Jensen, Theis Zetner Trolle, Jørkov, Marie Louise, Lysdahl, Per, Vimala, Tharsika, Refoyo-martínez, Alba, Scorrano, Gabriele, Price, T. Douglas, Gröcke, Darren R., Gotfredsen, Anne Birgitte, Sørensen, Lasse, Alexandersen, Verner, Wåhlin, Sidsel, Stenderup, Jesper, Bennike, Ole, Ingason, Andrés, Iversen, Rune, Sikora, Martin, Racimo, Fernando, Willerslev, Eske, Allentoft, Morten E., Kristiansen, Kristian, Fischer, Anders, Sjögren, Karl-Göran, Jensen, Theis Zetner Trolle, Jørkov, Marie Louise, Lysdahl, Per, Vimala, Tharsika, Refoyo-martínez, Alba, Scorrano, Gabriele, Price, T. Douglas, Gröcke, Darren R., Gotfredsen, Anne Birgitte, Sørensen, Lasse, Alexandersen, Verner, Wåhlin, Sidsel, Stenderup, Jesper, Bennike, Ole, Ingason, Andrés, Iversen, Rune, Sikora, Martin, Racimo, Fernando, Willerslev, Eske, Allentoft, Morten E., and Kristiansen, Kristian
- Abstract
The lethally maltreated body of Vittrup Man was deposited in a Danish bog, probably as part of a ritualised sacrifice. It happened between c. 3300 and 3100 cal years BC, i.e., during the period of the local farming-based Funnel Beaker Culture. In terms of skull morphological features, he differs from the majority of the contemporaneous farmers found in Denmark, and associates with hunter-gatherers, who inhabited Scandinavia during the previous millennia. His skeletal remains were selected for transdisciplinary analysis to reveal his life-history in terms of a population historical perspective. We report the combined results of an integrated set of genetic, isotopic, physical anthropological and archaeological analytical approaches. Strontium signature suggests a foreign birthplace that could be in Norway or Sweden. In addition, enamel oxygen isotope values indicate that as a child he lived in a colder climate, i.e., to the north of the regions inhabited by farmers. Genomic data in fact demonstrates that he is closely related to Mesolithic humans known from Norway and Sweden. Moreover, dietary stable isotope analyses on enamel and bone collagen demonstrate a fisher-hunter way of life in his childhood and a diet typical of farmers later on. Such a variable life-history is also reflected by proteomic analysis of hardened organic deposits on his teeth, indicating the consumption of forager food (seal, whale and marine fish) as well as farmer food (sheep/goat). From a dietary isotopic transect of one of his teeth it is shown that his transfer between societies of foragers and farmers took place near to the end of his teenage years.
- Published
- 2024
6. Plant, insect, and fungi fossils under the center of Greenland's ice sheet are evidence of ice-free times.
- Author
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Bierman, Paul R., Mastro, Halley M., Peteet, Dorothy M., Corbett, Lee B., Steig, Eric J., Halsted, Chris T., Caffee, Marc M., Hidy, Alan J., Balco, Greg, Bennike, Ole, and Rock, Barry
- Subjects
GREENLAND ice ,GLACIAL drift ,COSMOGENIC nuclides ,ICE sheets ,GLOBAL warming - Abstract
The persistence and size of the Greenland Ice Sheet (GrIS) through the Pleistocene is uncertain. This is important because reconstructing changes in the GrIS determines its contribution to sea level rise during prior warm climate periods and informs future projections. To understand better the history of Greenland's ice, we analyzed glacial till collected in 1993 from below 3 km of ice at Summit, Greenland. The till contains plant fragments, wood, insect parts, fungi, and cosmogenic nuclides showing that the bed of the GrIS at Summit is a long-lived, stable land surface preserving a record of deposition, exposure, and interglacial ecosystems. Knowing that central Greenland was tundra-covered during the Pleistocene informs the understanding of Arctic biosphere response to deglaciation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
7. Multi‐proxy palaeoenvironmental reconstruction of the Skagerrak from the Lateglacial to Middle Holocene.
- Author
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Ownsworth, Emma, Moros, Matthias, Lloyd, Jeremy, Bennike, Ole, Jensen, Jørn Bo, Blanz, Thomas, and Selby, David
- Subjects
HOLOCENE Epoch ,X-ray fluorescence ,RADIOCARBON dating ,GRAIN size ,ACCELERATOR mass spectrometry ,FORAMINIFERA ,FOSSIL microorganisms - Abstract
This study uses a multiproxy approach including the first use of 187Os/188Os, %C37:4 biomarkers, carbonate content, sedimentological grain size, geochemical X‐ray fluorescence and microfossil benthic foraminifera species combined with radiocarbon dating, measured on six cores from across the Skagerrak, in order to study the Lateglacial to Middle Holocene history of the area. A new chronostratigraphic framework is developed based on the appearance of specific benthic foraminifera species along with changes in carbonate/X‐ray fluorescence and grain size data. This allowed the correlation of cores based on a series of radiocarbon dated tie points. Analysing the cores together reveals several events recorded in the Skagerrak including: (i) an increased freshwater input (bracketed between 13.3 and 11.3 cal. ka BP) signified by radiogenic 187Os/188Os values, high %C37:4 values and an increase in sand content; (ii) the Glomma drainage event, signified by a sudden appearance of Valvulineria as well as higher %C37:4; and (iii) the opening of the Danish Straits and English Channel leading to the development of modern‐day conditions and circulation patterns in the Skagerrak, signified by the appearance of Hyalinea balthica and a fall in %C37:4. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
8. Vittrup Man–The life-history of a genetic foreigner in Neolithic Denmark
- Author
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Fischer, Anders, primary, Sjögren, Karl-Göran, additional, Jensen, Theis Zetner Trolle, additional, Jørkov, Marie Louise, additional, Lysdahl, Per, additional, Vimala, Tharsika, additional, Refoyo-Martínez, Alba, additional, Scorrano, Gabriele, additional, Price, T. Douglas, additional, Gröcke, Darren R., additional, Gotfredsen, Anne Birgitte, additional, Sørensen, Lasse, additional, Alexandersen, Verner, additional, Wåhlin, Sidsel, additional, Stenderup, Jesper, additional, Bennike, Ole, additional, Ingason, Andrés, additional, Iversen, Rune, additional, Sikora, Martin, additional, Racimo, Fernando, additional, Willerslev, Eske, additional, Allentoft, Morten E., additional, and Kristiansen, Kristian, additional
- Published
- 2024
- Full Text
- View/download PDF
9. Proglacial lake sediment records of Holocene mountain glacier change on the Nuussuaq Peninsula, West Greenland: Initial results
- Author
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Schweinsberg, Avriel, primary, Briner, Jason, additional, Licciardi, Joseph, additional, and Bennike, Ole, additional
- Published
- 2022
- Full Text
- View/download PDF
10. Lacustrine records of mountain glacier fluctuations from western Greenland
- Author
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Schweinsberg, Avriel, primary, Briner, Jason, additional, and Bennike, Ole, additional
- Published
- 2022
- Full Text
- View/download PDF
11. An Early Pleistocene interglacial deposit at Pingorsuit, North-West Greenland
- Author
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Bennike, Ole, Colgan, William, Hedenäs, Lars, Heiri, Oliver, Lemdahl, Geoffrey, Wiberg-Larsen, Peter, Ribeiro, Sofia, Pronzato, Roberto, Manconi, Renata, Bjork, Anders A., Bennike, Ole, Colgan, William, Hedenäs, Lars, Heiri, Oliver, Lemdahl, Geoffrey, Wiberg-Larsen, Peter, Ribeiro, Sofia, Pronzato, Roberto, Manconi, Renata, and Bjork, Anders A.
- Abstract
At the Pingorsuit Glacier in North-West Greenland, an organic-rich deposit that had recently emerged from the retreating ice cap was discovered at an elevation of 480 m above sea level. This paper reports on macrofossil analyses of a coarse detritus gyttja and peaty soil, which occurred beneath a thin cover of till and glacifluvial deposits. The sediments contained remains of vascular plants, mosses, beetles, caddisflies, midges, bryozoans, sponges and other invertebrates. The flora includes black spruce, tree birch, boreal shrubs and wetland and aquatic taxa, which shows that mires, lakes and ponds were present in the area. We describe a new extinct waterwort species Elatine odgaardii. The fossils were deposited in a boreal environment with a mean July air temperature that was at least 9 degrees C higher than at present. The fossil assemblages show strong similarities with others from Greenland that have been assigned an Early Pleistocene age, and we suggest a similar age for the sediments found at the margin of the Pingorsuit Glacier. At the Pingorsuit Glacier in North-West Greenland, an organic-rich deposit was discovered at an elevation of 480 m above sea level. The sediments contained remains of vascular plants, mosses, beetles, caddisflies, midges, bryozoans, sponges and other invertebrates. The fossils were deposited in a boreal environment with a mean July air temperature that was at least 9 degrees C higher than at present.
- Published
- 2023
- Full Text
- View/download PDF
12. Holocene shore‐level changes, southern Lolland and the Femern Belt, Denmark
- Author
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Bennike, Ole, primary, Philippsen, Bente, additional, Groẞ, Daniel, additional, and Jessen, Catherine, additional
- Published
- 2022
- Full Text
- View/download PDF
13. Sea-level rise in Denmark: paleo context, recent projections and policy implications
- Author
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Colgan, William, primary, Henriksen, Hans Jørgen, additional, Bennike, Ole, additional, Riberio, Sofia, additional, Keiding, Marie, additional, Karlsson Seidenfaden, Ida, additional, Graversgaard, Morten, additional, Busck, Anne Gravsholt, additional, Fruergaard, Mikkel, additional, Knudsen, Michael Helt, additional, Hopper, John, additional, Sonnenborg, Torben, additional, Skjerbæk, Maria Rebekka, additional, Bjørk, Anders Anker, additional, Steffen, Holger, additional, Tarasov, Lev, additional, Nerem, R. Steven, additional, and Kjeldsen, Kristian K., additional
- Published
- 2022
- Full Text
- View/download PDF
14. An Early Pleistocene interglacial deposit at Pingorsuit, North‐West Greenland
- Author
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Bennike, Ole, primary, Colgan, William, additional, Hedenäs, Lars, additional, Heiri, Oliver, additional, Lemdahl, Geoffrey, additional, Wiberg‐Larsen, Peter, additional, Ribeiro, Sofia, additional, Pronzato, Roberto, additional, Manconi, Renata, additional, and Bjørk, Anders A., additional
- Published
- 2022
- Full Text
- View/download PDF
15. Holocene development of Brabrand Fjord, eastern Jylland, Denmark
- Author
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Bennike, Ole, Astrup, Peter Moe, Odgaard, Bent Vad, Pearce, Christof, and Wiberg-Larsen, Peter
- Subjects
Quaternary ,relative sea-level changes ,Ostrea ,Littorina Sea ,Geology ,tidal amplitude ,Brabrand Sø - Abstract
The Brabrand Sø area west of Aarhus in eastern Jylland, Denmark, was deglaciated about 18 000 to 17 000 years ago. Coring in the present-day lake area revealed Early Holocene stream deposits overlain by marine deposits. The area was transgressed by the sea at c. 8500 cal. years BP and a 12 km long, narrow fjord was formed. In the beginning, the fjord housed a species-poor marine or brackish-water fauna with molluscs Hydrobia sp. (mudsnail), Littorina littorea (winkle), Mytilus edulis (blue mussel) and Cerastoderma sp. (cockle). This phase was followed by a phase during which the fjord housed a species-rich fauna that included Ostrea edulis (European flat oyster) and Ruditapes decussatus (palourde clam). During this phase the salinity and summer water temperatures were higher than in present day Aarhus Bugt and we also see evidence for strong bottom currents. This phase was probably characterised by a fairly large tidal amplitude. Two radiocarbon ages of O. edulis shells of c. 6250 and 6700 cal. years BP indicate that such conditions peaked during the period of the Ertebølle culture. The high-salinity phase was followed by a phase with a more species-poor fauna, this phase was also characterised by a high sedimentation rate – a feature seen in other fjords in the region. We suggest that the shift could be due to a decrease in tidal amplitude. Brabrand Fjord was eventually transformed into a lake due to land uplift and closure of the connection to Aarhus Bugt due to longshore sediment transport but the timing of the transition from fjord to lake is still unknown.
- Published
- 2022
16. Sea-level rise in Denmark:paleo context, recent projections and policy implications
- Author
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Colgan, William, Henriksen, Hans Jørgen, Bennike, Ole, Ribeiro, Sofia, Keiding, Marie, Seidenfaden, Ida Karlsson, Graversgaard, Morten, Busck, Anne Gravsholt, Fruergaard, Mikkel, Knudsen, Michael Helt, Hopper, John, Sonnenborg, Torben, Skjerbæk, Maria Rebekka, Bjørk, Anders Anker, Steffen, Holger, Tarasov, Lev, Nerem, R. Steven, Kjeldsen, Kristian K., Colgan, William, Henriksen, Hans Jørgen, Bennike, Ole, Ribeiro, Sofia, Keiding, Marie, Seidenfaden, Ida Karlsson, Graversgaard, Morten, Busck, Anne Gravsholt, Fruergaard, Mikkel, Knudsen, Michael Helt, Hopper, John, Sonnenborg, Torben, Skjerbæk, Maria Rebekka, Bjørk, Anders Anker, Steffen, Holger, Tarasov, Lev, Nerem, R. Steven, and Kjeldsen, Kristian K.
- Abstract
We present the most recent Intergovernmental Panel on Climate Change Sixth Assessment Report (AR6) sea-level projections for four Danish cities (Aarhus, Copenhagen, Esbjerg and Hirtshals) under the Shared Socioeconomic Pathway (SSP) family of climate scenarios. These sea-level changes projected over the next century are up to an order of magnitude larger than those observed over the previous century. At these cities, year 2150 sea-level changes of between 29 and 55 cm are projected under the very low emissions scenario (SSP1-1.9), whilst changes of between 99 and 123 cm are projected under the very high emissions scenario (SSP5-8.5). These differences highlight the potentially significant impact of remaining opportunities for climate change mitigation. Due to this increase in mean sea level, the mean recurrence time between historically extreme events is expected to decrease. Under the very high emissions scenario, the historical 100-year storm flood event will become a 1-to 5-year event at most Danish harbours by 2100. There is considerable uncertainty associated with these sea-level projections, primarily driven by uncertainty in the future evolution of the Antarctic ice sheet and future sterodynamic changes in ocean volume. The AR6 characterises collapse of the West Antarctic ice sheet as a low-probability but high-impact event that could cause several metres of sea-level rise around Denmark by 2150. In climate adaptation policy, the scientific landscape is shifting fast. There has been a tremendous proliferation of diverse sea-level projections in recent years, with the most relevant planning target for Denmark increas-ing c. 50 cm in the past two decades. Translating sea-level rise projections into planning targets requires value judgments about acceptable sea-level risk that depend on local geography, planning timeline and climate pathway. This highlights the need for an overarching national sea-level adaptation plan to ensure municipal plans conform to ris
- Published
- 2022
17. Macrofossil studies of Lateglacial sediments from Regstrup, north-west Sjælland, Denmark
- Author
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Bennike, Ole, Claudi-Hansen, Lone, Magnussen, Betina, Wiberg-Larsen, Peter, Bennike, Ole, Claudi-Hansen, Lone, Magnussen, Betina, and Wiberg-Larsen, Peter
- Abstract
Studies of macrofossils indicate that the vegetation near Regstrup in north-west Sjælland, Denmark, from c. 13 600 to 13 500 cal. years BP was dominated by dwarf-shrub heaths. Betula pubescens (downy birch) arrived at c. 13 500 cal. years BP and became common after c. 13 200 cal. years BP. Open forests with B. pubescens and Populus tremula (aspen) dominated until c. 12 500 cal. years BP, indicating that an Allerød-type environment persisted for c. 350 years after the cooling at the onset of the Younger Dryas, which is dated to c. 12 850 years BP in ice cores from Green-land. Betula nana was common after c. 12 500 cal. years BP, indicating a return to a tundra-like landscape with dwarf-shrub heaths. The fauna included Rangifer taran-dus (reindeer), Castor fiber (Eurasian beaver) and possibly Lemmus lemmus (Norway lemming). The lake deposits contain remains of many species of aquatic plants and animals, including three species of fish. The flora and fauna indicate that the lake water was fairly nutrient-rich and alkaline.
- Published
- 2022
18. Holocene shore‐level changes, southern Lolland and the Femern Belt, Denmark.
- Author
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Bennike, Ole, Philippsen, Bente, Groẞ, Daniel, and Jessen, Catherine
- Subjects
HOLOCENE Epoch ,WATER levels ,DETERIORATION of materials ,CARBON isotopes ,RADIOCARBON dating - Abstract
We propose a new shore‐level displacement curve for southern Lolland and the Femern Belt in south‐eastern Denmark based on 94 new and four published radiocarbon ages of organic material and shells of marine molluscs. Mires existed in the deeper parts of the Femern Belt during the Early Holocene, and a large lake formed as the water level gradually rose. The lake phase was followed first by a brackish‐water phase from c. 8500 cal a bp and by a marine phase after c. 7800 cal a bp when the relative sea level was ~8 m lower than at present. Over the past 6500 years the sea level has gradually risen by ~2 m and reached its highest level in recent times. There are no indications of a higher than present sea level in the area and no indications of 1–2 m sea‐level oscillations as reported from other parts of the region. The relative sea‐level curve for southern Lolland differs from relative sea‐level curves from northern parts of Denmark, which are more influenced by glacio‐isostatic uplift. Southern Lolland has been uplifted by 4–5 m over the last 8000 years, whereas the Limfjord region in northern Denmark has been uplifted by around 12 m during the same period. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
19. A new Middle Pleistocene interglacial occurrence from Ejby, Sjælland, Denmark
- Author
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Bennike, Ole, primary and Wiberg-Larsen, Peter, additional
- Published
- 2022
- Full Text
- View/download PDF
20. The Svanemølle Harbour site, Copenhagen. Groundtruthing of a submerged Mesolithic site detected by acoustic remote-sensing
- Author
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Gron, Ole, Boldreel, Lars Ole, Bennike, Ole, Nilsson, Bjorn, Tayong Boumda, Rostand, Blondel, Philippe, Mader, Andreas, Bleicher, Niels, Cvikel, Deborah, Galili, Ehud, Hu, Changquin, and Gao, Xing
- Subjects
underwater acoustics ,aonar ,remote sensing ,Geophysics ,Acoustics and Ultrasonics ,Archaeology ,Ocean Engineering ,underwater archaeology - Published
- 2021
21. Development of Predictive Geoarchaeological Models to Locate and Assess the Preservation Potential of Submerged Prehistoric Sites Using Remote Sensing, Palaeoenvironmental Analysis, and GIS
- Author
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Gregory, David John, primary, Bennike, Ole, additional, Jensen, Jørn Bo, additional, Rasmussen, Peter, additional, and Al-Hamdani, Zyad, additional
- Published
- 2021
- Full Text
- View/download PDF
22. Lateglacial to Mid-Holocene history of Vasby Mose, eastern Sjælland, Denmark.
- Author
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BENNIKE, OLE and NILSSON, BERTEL
- Subjects
- *
AQUATIC plants , *YOUNGER Dryas , *AQUATIC animals , *TUFAS , *HOLOCENE Epoch - Abstract
We retrieved a sediment core from Vasby Mose, a calcareous fen on eastern Sjælland, Denmark. The record spans the period from c. 14 700 to 6800 cal. years BP. During the Lateglacial, Vasby Mose was a lake where minerogenic sandy and clayey sediments accumulated. In the early Lateglacial, from c. 14 700 to 13 200 cal. years BP, a tundralike open, treeless vegetation with Betula nana and Dryas octopetala was found in the region. During the Younger Dryas, a rich flora of aquatic plants was found in the lake. In the Early to Mid-Holocene, Vasby Mose was a spring-fed calcareous fen, with deposition of peat and tufa. The flora included the sedges Carex rostrata and Carex paniculata, the aquatic plant Menyathes trifoliata, the calciphilous reed plant Cladium mariscus and the today nationally extinct bryophyte Meesia triquetra. The fauna included aquatic mollusc taxa such as Pisidium sp., Valvata spp. And Bithynia tentaculata and terrestrial or semi-terrestrial species such as Galba truncatula, Euconolus cf. alderi, Succinea/Oxyloma, Zonitoides nitidus and Vallonia pulchella. The Preboreal oscillation and other Early Holocene climate events are seen as short-lived, wet intervals. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
23. CONTINENTAL GEOLOGY AND GEODESY.
- Author
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Berg, Sonja, Wagner, Bernd, Bennike, Ole, Leicher, Niklas, Kappelsberger, Maria, Heidrich-Meisner, Karl, Gutjahr, Marcus, Melles, Martin, Scheinert, Mirko, and White, Duanne
- Published
- 2022
24. Advancing responsible genomic analyses of ancient mollusc shells.
- Author
-
Martin-Roy R, Thyrring J, Mata X, Bangsgaard P, Bennike O, Christiansen G, Funder S, Gotfredsen AB, Gregersen KM, Hansen CH, Ilsøe PC, Klassen L, Kristensen IK, Ravnholt GB, Marin F, and Der Sarkissian C
- Subjects
- Animals, X-Ray Microtomography, Calcium Carbonate, High-Throughput Nucleotide Sequencing, Fossils, Animal Shells, Genomics methods, Mollusca genetics
- Abstract
The analysis of the DNA entrapped in ancient shells of molluscs has the potential to shed light on the evolution and ecology of this very diverse phylum. Ancient genomics could help reconstruct the responses of molluscs to past climate change, pollution, and human subsistence practices at unprecedented temporal resolutions. Applications are however still in their infancy, partly due to our limited knowledge of DNA preservation in calcium carbonate shells and the need for optimized methods for responsible genomic data generation. To improve ancient shell genomic analyses, we applied high-throughput DNA sequencing to 27 Mytilus mussel shells dated to ~111-6500 years Before Present, and investigated the impact, on DNA recovery, of shell imaging, DNA extraction protocols and shell sub-sampling strategies. First, we detected no quantitative or qualitative deleterious effect of micro-computed tomography for recording shell 3D morphological information prior to sub-sampling. Then, we showed that double-digestion and bleach treatment of shell powder prior to silica-based DNA extraction improves shell DNA recovery, also suggesting that DNA is protected in preservation niches within ancient shells. Finally, all layers that compose Mytilus shells, i.e., the nacreous (aragonite) and prismatic (calcite) carbonate layers, with or without the outer organic layer (periostracum) proved to be valuable DNA reservoirs, with aragonite appearing as the best substrate for genomic analyses. Our work contributes to the understanding of long-term molecular preservation in biominerals and we anticipate that resulting recommendations will be helpful for future efficient and responsible genomic analyses of ancient mollusc shells., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Martin-Roy et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
- Full Text
- View/download PDF
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