1,198 results on '"Allan, D."'
Search Results
2. Social Change and Scientific Organisation: The Royal Institution, 1799–1844 by Morris Berman (review)
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Allan, D. G. C.
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- 2023
3. Social media “SoMe” in neuro-oncology: a review of the literature
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Klein, Benjamin R., Levi, David J., Shah, Ashish H., Ivan, Michael E., and Levi, Allan D.
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- 2024
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4. Influence of instrumentation type on outcomes after surgical management of spondylodiscitis: a systematic review and meta-analysis
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Maddy, Krisna S., Tigre, Joseph Yunga, Lu, Victor M., Costello, Meredith C., Errante, Emily L., Levi, Allan D., and Burks, S. Shelby
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- 2024
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5. Classifying Organizations for Food System Ontologies using Natural Language Processing
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Jiang, Tianyu, Vinogradova, Sonia, Stringham, Nathan, Earl, E. Louise, Hollander, Allan D., Huber, Patrick R., Riloff, Ellen, Schillo, R. Sandra, Ubbiali, Giorgio A., and Lange, Matthew
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Computers and Society ,Computer Science - Information Retrieval ,H.3.1 ,I.2.7 ,J.3 ,J.4 ,K.4.3 - Abstract
Our research explores the use of natural language processing (NLP) methods to automatically classify entities for the purpose of knowledge graph population and integration with food system ontologies. We have created NLP models that can automatically classify organizations with respect to categories associated with environmental issues as well as Standard Industrial Classification (SIC) codes, which are used by the U.S. government to characterize business activities. As input, the NLP models are provided with text snippets retrieved by the Google search engine for each organization, which serves as a textual description of the organization that is used for learning. Our experimental results show that NLP models can achieve reasonably good performance for these two classification tasks, and they rely on a general framework that could be applied to many other classification problems as well. We believe that NLP models represent a promising approach for automatically harvesting information to populate knowledge graphs and aligning the information with existing ontologies through shared categories and concepts., Comment: Presented at IFOW 2023 Integrated Food Ontology Workshop at the Formal Ontology in Information Systems Conference (FOIS) 2023 in Sherbrooke, Quebec, Canada July 17-20th, 2023
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- 2023
6. Efficient and Accurate Optimal Transport with Mirror Descent and Conjugate Gradients
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Kemertas, Mete, Jepson, Allan D., and Farahmand, Amir-massoud
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Computer Science - Machine Learning - Abstract
We design a novel algorithm for optimal transport by drawing from the entropic optimal transport, mirror descent and conjugate gradients literatures. Our scalable and GPU parallelizable algorithm is able to compute the Wasserstein distance with extreme precision, reaching relative error rates of $10^{-8}$ without numerical stability issues. Empirically, the algorithm converges to high precision solutions more quickly in terms of wall-clock time than a variety of algorithms including log-domain stabilized Sinkhorn's Algorithm. We provide careful ablations with respect to algorithm and problem parameters, and present benchmarking over upsampled MNIST images, comparing to various recent algorithms over high-dimensional problems. The results suggest that our algorithm can be a useful addition to the practitioner's optimal transport toolkit.
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- 2023
7. StepFormer: Self-supervised Step Discovery and Localization in Instructional Videos
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Dvornik, Nikita, Hadji, Isma, Zhang, Ran, Derpanis, Konstantinos G., Garg, Animesh, Wildes, Richard P., and Jepson, Allan D.
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Instructional videos are an important resource to learn procedural tasks from human demonstrations. However, the instruction steps in such videos are typically short and sparse, with most of the video being irrelevant to the procedure. This motivates the need to temporally localize the instruction steps in such videos, i.e. the task called key-step localization. Traditional methods for key-step localization require video-level human annotations and thus do not scale to large datasets. In this work, we tackle the problem with no human supervision and introduce StepFormer, a self-supervised model that discovers and localizes instruction steps in a video. StepFormer is a transformer decoder that attends to the video with learnable queries, and produces a sequence of slots capturing the key-steps in the video. We train our system on a large dataset of instructional videos, using their automatically-generated subtitles as the only source of supervision. In particular, we supervise our system with a sequence of text narrations using an order-aware loss function that filters out irrelevant phrases. We show that our model outperforms all previous unsupervised and weakly-supervised approaches on step detection and localization by a large margin on three challenging benchmarks. Moreover, our model demonstrates an emergent property to solve zero-shot multi-step localization and outperforms all relevant baselines at this task., Comment: CVPR'23
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- 2023
8. Associations Between Neighborhood Racialized Economic Segregation with Cardiometabolic Health and Cortisol in a Racially/Ethnically Diverse Sample of Children from Minneapolis?St. Paul
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Christopher P. Carr, Allan D. Tate, Amanda Trofholz, Junia N. de Brito, Andrea N. Trejo, Michael F. Troy, Jerica M. Berge, and Alicia Kunin-Batson
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health disparities ,structural racism ,childhood ,cardiometabolic health ,Public aspects of medicine ,RA1-1270 - Abstract
Introduction: Past research shows that structural racism contributes to disparities in cardiometabolic health among racially/ethnically minoritized populations. Methods: This cross-sectional study examined the correlation between census tract-level racialized economic segregation and child health metrics among a racially and ethnically diverse cohort of 350 children (ages 6.5?13.8) from Minneapolis?St. Paul, MN. Results: A consistent cardiometabolic and cortisol outcome gradient was observed across the index of concentration at the extremes tertiles, such that health risk factors increased as tract privilege decreased. Conclusion: Racialized economic segregation was associated with less favorable child health outcomes, underscoring the potential importance of place-based interventions for promoting children?s health.
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- 2024
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9. Reply
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Ciaran Kohli-Lynch, PhD, George Thanassoulis, MD, Michael Pencina, PhD, Daniel Sehayek, MD, Karol Pencina, PhD, Andrew Moran, MD, MPH, and Allan D. Sniderman, MD
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Published
- 2024
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10. Penstemon albidus (Plantaginaceae) in the Lampasas Cut Plain Ecoregion of Texas
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Nelson, Allan D., Stanford, J, and BioStor
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- 2023
11. Near-riparian vegetation of the Colorado River at Colorado Bend State Park and Regency, Texas
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Nelson, Allan D., Rosiere, R, Cotton, T, Brown, S, Cosby, D, and BioStor
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- 2023
12. Graph2Vid: Flow graph to Video Grounding for Weakly-supervised Multi-Step Localization
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Dvornik, Nikita, Hadji, Isma, Pham, Hai, Bhatt, Dhaivat, Martinez, Brais, Fazly, Afsaneh, and Jepson, Allan D.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
In this work, we consider the problem of weakly-supervised multi-step localization in instructional videos. An established approach to this problem is to rely on a given list of steps. However, in reality, there is often more than one way to execute a procedure successfully, by following the set of steps in slightly varying orders. Thus, for successful localization in a given video, recent works require the actual order of procedure steps in the video, to be provided by human annotators at both training and test times. Instead, here, we only rely on generic procedural text that is not tied to a specific video. We represent the various ways to complete the procedure by transforming the list of instructions into a procedure flow graph which captures the partial order of steps. Using the flow graphs reduces both training and test time annotation requirements. To this end, we introduce the new problem of flow graph to video grounding. In this setup, we seek the optimal step ordering consistent with the procedure flow graph and a given video. To solve this problem, we propose a new algorithm - Graph2Vid - that infers the actual ordering of steps in the video and simultaneously localizes them. To show the advantage of our proposed formulation, we extend the CrossTask dataset with procedure flow graph information. Our experiments show that Graph2Vid is both more efficient than the baselines and yields strong step localization results, without the need for step order annotation., Comment: ECCV'22, oral
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- 2022
13. Virtual fitness buddy ecosystem: a mixed reality precision health physical activity intervention for children
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Sun Joo (Grace) Ahn, Michael D. Schmidt, Allan D. Tate, Stephen Rathbun, James J. Annesi, Lindsay Hahn, Eric Novotny, Christian Okitondo, Rebecca N. Grimsley, and Kyle Johnsen
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract 6–11-year-old children provide a critical window for physical activity (PA) interventions. The Virtual Fitness Buddy ecosystem is a precision health PA intervention for children integrating mixed reality technology to connect people and devices. A cluster randomized, controlled trial was conducted across 19 afterschool sites over two 6-month cohorts to test its efficacy in increasing PA and decreasing sedentary behavior. In the treatment group, a custom virtual dog via a mixed reality kiosk helped children set PA goals while sharing progress with parents to receive feedback and support. Children in the control group set PA goals using a computer without support from the virtual dog or parents. 303 children had 8+ hours of PA data on at least one day of each of the 3 intervention time intervals. Conversion of sedentary time was primarily to light-intensity PA and was strongest for children with low baseline moderate-to-vigorous PA than children above 45 min of baseline moderate-to-vigorous PA. Findings suggest that the VFB ecosystem can promote sustainable PA in children and may be rapidly diffused for widespread public health impact.
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- 2024
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14. Loss of tumor-derived SMAD4 enhances primary tumor growth but not metastasis following BMP4 signalling
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Lap Hing Chi, Andrew D. Redfern, Suraya Roslan, Ian P. Street, Allan D. Burrows, and Robin L. Anderson
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Breast cancer ,Metastasis ,BMP4 ,SMAD4 ,MYO1F ,Patient outcomes ,Medicine ,Cytology ,QH573-671 - Abstract
Abstract Background Bone morphogenetic protein 4 (BMP4) is a potent inhibitor of breast cancer metastasis. However, a tumor-promoting effect of BMP4 is reported in other tumor types, especially when SMAD4 is inactive. Methods To assess the requirement for SMAD4 in BMP4-mediated suppression of metastasis, we knocked down SMAD4 in two different breast tumors and enforced SMAD4 expression in a third line with endogenous SMAD4 deletion. In addition, we assessed the requirement for SMAD4 in tumor cell-specific BMP signalling by expression of a constitutively active BMP receptor. Delineation of genes regulated by BMP4 in the presence or absence of SMAD4 was assessed by RNA sequencing and a BMP4-induced gene, MYO1F was assessed for its role in metastasis. Genes regulated by BMP4 and/or SMAD4 were assessed in a publicly available database of gene expression profiles of breast cancer patients. Results In the absence of SMAD4, BMP4 promotes primary tumor growth that is accompanied by increased expression of genes associated with DNA replication, cell cycle, and MYC signalling pathways. Despite increased primary tumor growth, BMP4 suppresses metastasis in the absence of tumor cell expression of SMAD4. Consistent with the anti-metastatic activity of BMP4, enforced signalling through the constitutively active receptor in SMAD4 positive tumors that lacked BMP4 expression still suppressed metastasis, but in the absence of SMAD4, the suppression of metastasis was largely prevented. Thus BMP4 is required for suppression of metastasis regardless of tumor SMAD4 status. The BMP4 upregulated gene, MYO1F, was shown to be a potent suppressor of breast cancer metastasis. Gene signature upregulated by BMP4 in the absence of SMAD4 was associated with poor prognosis in breast cancer patients, whereas gene signature upregulated by BMP4 in the presence of SMAD4 was associated with improved prognosis. Conclusions BMP4 expression is required for suppression of metastasis regardless of the SMAD4 status of the tumor cells. Since BMP4 is a secreted protein, we conclude that it can act both in an autocrine manner in SMAD4-expressing tumor cells and in a paracrine manner on stromal cells to suppress metastasis. Deletion of SMAD4 from tumor cells does not prevent BMP4 from suppressing metastasis via a paracrine mechanism.
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- 2024
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15. Grand Unification of continuous-variable codes
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Tosta, Allan D. C., Maciel, Thiago O., and Aolita, Leandro
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Quantum Physics - Abstract
Quantum error correction codes in continuous variables (also called CV codes, or single-mode bosonic codes) have recently been identified to be a technologically viable option for building fault-tolerant quantum computers. The best-known examples are the GKP code and the cat-code, both of which were shown to have some advantageous properties over any discrete-variable, or qubit codes. It was recently shown that the cat-code, as well as other kinds of CV codes, belong to a set of codes with common properties called rotation-symmetric codes. We expand this result by giving a general description of sets of codes with common properties, and rules by which they can be mapped into one another, effectively creating a unified description of continuous-variable codes. We prove that the properties of all of these sets of codes can be obtained from the properties of the GKP code. We also show explicitly how this construction works in the case of rotation-symmetric codes, re-deriving known properties and finding new ones., Comment: 22 pages (9 pages of main text and 13 pages of appendices), 2 figures, comments are welcome
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- 2022
16. Dissociating Language and Thought in Human Reasoning †
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Coetzee, John P, Johnson, Micah A, Lee, Youngzie, Wu, Allan D, Iacoboni, Marco, and Monti, Martin M
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Biological Psychology ,Psychology ,Clinical Research ,language ,cognition ,deductive reasoning ,neuromodulation ,theta burst stimulation ,transcranial magnetic stimulation ,Neurosciences ,Cognitive Sciences ,Applied and developmental psychology ,Biological psychology - Abstract
What is the relationship between language and complex thought? In the context of deductive reasoning there are two main views. Under the first, which we label here the language-centric view, language is central to the syntax-like combinatorial operations of complex reasoning. Under the second, which we label here the language-independent view, these operations are dissociable from the mechanisms of natural language. We applied continuous theta burst stimulation (cTBS), a form of noninvasive neuromodulation, to healthy adult participants to transiently inhibit a subregion of Broca's area (left BA44) associated in prior work with parsing the syntactic relations of natural language. We similarly inhibited a subregion of dorsomedial frontal cortex (left medial BA8) which has been associated with core features of logical reasoning. There was a significant interaction between task and stimulation site. Post hoc tests revealed that performance on a linguistic reasoning task, but not deductive reasoning task, was significantly impaired after inhibition of left BA44, and performance on a deductive reasoning task, but not linguistic reasoning task, was decreased after inhibition of left medial BA8 (however not significantly). Subsequent linear contrasts supported this pattern. These novel results suggest that deductive reasoning may be dissociable from linguistic processes in the adult human brain, consistent with the language-independent view.
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- 2023
17. Why Do We Need Food Systems Informatics? Introduction to This Special Collection on Smart and Connected Regional Food Systems
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Tomich, Thomas P, Hoy, Casey, Dimock, Michael R, Hollander, Allan D, Huber, Patrick R, Hyder, Ayaz, Lange, Matthew C, Riggle, Courtney M, Roberts, Michael T, and Quinn, James F
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Information and Computing Sciences ,Agricultural ,Veterinary and Food Sciences ,Food Sciences ,Prevention ,Zero Hunger ,Sustainable Cities and Communities ,assessment workflow ,informatics ,ontology ,knowledge graph ,semantic web of food ,internet of food ,food justice ,resilience ,democratization ,sustainability ,Built Environment and Design - Abstract
Public interest in where food comes from and how it is produced, processed, and distributed has increased over the last few decades, with even greater focus emerging during the COVID-19 pandemic. Mounting evidence and experience point to disturbing weaknesses in our food systems’ abilities to support human livelihoods and wellbeing, and alarming long-term trends regarding both the environmental footprint of food systems and mounting vulnerabilities to shocks and stressors. How can we tackle the “wicked problems” embedded in a food system? More specifically, how can convergent research programs be designed and resulting knowledge implemented to increase inclusion, sustainability, and resilience within these complex systems, support widespread contributions to and acceptance of solutions to these challenges, and provide concrete benchmarks to measure progress and understand tradeoffs among strategies along multiple dimensions? This article introduces and defines food systems informatics (FSI) as a tool to enhance equity, sustainability, and resilience of food systems through collaborative, user-driven interaction, negotiation, experimentation, and innovation within food systems. Specific benefits we foresee in further development of FSI platforms include the creation of capacity-enabling verifiable claims of sustainability, food safety, and human health benefits relevant to particular locations and products; the creation of better incentives for the adoption of more sustainable land use practices and for the creation of more diverse agro-ecosystems; the wide-spread use of improved and verifiable metrics of sustainability, resilience, and health benefits; and improved human health through better diets.
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- 2023
18. R. Randal Bollinger, M.D., Ph.D., Master Surgeon
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Stuart J. Knechtle and Allan D. Kirk
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transplant ,surgeon ,research ,teacher ,mentor ,immunology ,Specialties of internal medicine ,RC581-951 - Published
- 2024
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19. P3IV: Probabilistic Procedure Planning from Instructional Videos with Weak Supervision
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Zhao, He, Hadji, Isma, Dvornik, Nikita, Derpanis, Konstantinos G., Wildes, Richard P., and Jepson, Allan D.
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Computer Science - Computer Vision and Pattern Recognition - Abstract
In this paper, we study the problem of procedure planning in instructional videos. Here, an agent must produce a plausible sequence of actions that can transform the environment from a given start to a desired goal state. When learning procedure planning from instructional videos, most recent work leverages intermediate visual observations as supervision, which requires expensive annotation efforts to localize precisely all the instructional steps in training videos. In contrast, we remove the need for expensive temporal video annotations and propose a weakly supervised approach by learning from natural language instructions. Our model is based on a transformer equipped with a memory module, which maps the start and goal observations to a sequence of plausible actions. Furthermore, we augment our model with a probabilistic generative module to capture the uncertainty inherent to procedure planning, an aspect largely overlooked by previous work. We evaluate our model on three datasets and show our weaklysupervised approach outperforms previous fully supervised state-of-the-art models on multiple metrics., Comment: Accepted as an oral paper at CVPR 2022
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- 2022
20. The role of emboli detection studies in acute inpatient vertebral artery dissection
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Perez-Roman, Roberto J., Bashti, Malek, Silva, Michael A., Govindarajan, Vaidya, Boddu, James, Sheinberg, Dallas L., Cowan, Maiya, Shah, Ashish, and Levi, Allan D.
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- 2024
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21. Invasive genetic rescue: dispersal following repeated culling reinforces the genetic diversity of an invasive mammal
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Synnott, Rebecca, Shuttleworth, Craig, Everest, David J., Stevenson-Holt, Claire, O’Reilly, Catherine, McDevitt, Allan D., and O’Meara, Denise B.
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- 2023
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22. Lower extremity peripheral nerve pathology: Utility of preoperative ultrasound-guided needle localization before operative intervention
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Finkelstein, Emily R., Buitrago, Joanne, Jose, Jean, Levi, Allan D., Xu, Kyle Y., and Burks, S. Shelby
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- 2023
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23. Effects of Obesity on Cervical Disc Arthroplasty Complications
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Katherine M. Berry, Vaidya Govindarajan, Connor Berger, Krisna Maddy, Roberto J. Perez Roman, Evan M. Luther, and Allan D. Levi
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arthroplasty ,replacement ,obesity ,cervical vertebrae ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Objective High body mass index is a well-established modifiable comorbidity that is known to increase postoperative complications in all types of surgery, including spine surgery. Obesity is increasing in prevalence amongst the general population. As this growing population of obese patients ages, understanding how they faire undergoing cervical disc arthroplasty (CDA) is important for providing safe and effective evidence-based care for cervical degenerative pathology. Methods Our study used the Healthcare Cost and Utilization Project’s National Inpatient Sample to assess patients undergoing CDA comparing patient characteristics and outcomes in nonobese patients to obese patients from 2004 to 2014. Results Our study found a significant increase in the overall utilization of CDA as a treatment modality (p = 0.012) and a statistically significant increase in obese patients undergoing CDA (p < 0.0001) from 2004 to 2014. Obesity was identified as an independent risk factor associated with increased rates of inpatient neurologic complications (odds ratio [OR], 6.99; p = 0.03), pulmonary embolus (OR, 5.41; p = 0.05), and wound infection (OR, 6.97; p < 0.001) in patients undergoing CDA from 2004 to 2014. Conclusion In patients undergoing CDA, from 2004 to 2014, obesity was identified as an independent risk factor with significantly increased rates of inpatient neurologic complications, pulmonary embolus and wound infection. Large prospective trials are needed to validate these findings.
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- 2023
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24. Quantifying the vegetative community of a bottomland-floodplain forest within Colorado Bend State Park along the Colorado River
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O'Neal, B K, Nelson, Allan D., O'Neal, C J, and BioStor
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- 2022
25. Acute Surgical Site Complications in Direct Anterior Total Hip Arthroplasty: Impact of Local Subcutaneous Tissue Depth and Body Mass Index
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Revelt, Nicolas, Sleiman, Anthony, Kurcz, Brian, George, Edgar, Kleinsmith, Rebekah, Feibel, Benjamin, Thuppal, Sowmyanarayanan, Delfino, Kristin, and Allan, D. Gordon
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- 2024
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26. Advancing mouse models for transplantation research
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Cravedi, Paolo, Riella, Leonardo V., Ford, Mandy L., Valujskikh, Anna, Menon, Madhav C., Kirk, Allan D., Alegre, Maria-Luisa, Alessandrini, Alessandro, Feng, Sandy, Kehn, Patricia, Najafian, Nader, Hancock, Wayne W., Heeger, Peter S., Maltzman, Jonathan S., Mannon, Roslyn B., Nadig, Satish N., Odim, Jonah, Turnquist, Heth, Shaw, Julia, West, Lori, Luo, Xunrong, Chong, Anita S., and Bromberg, Jonathan S.
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- 2024
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27. Characteristics and Outcomes of Patients Treated with Cervical Spine Fusion at High Volume Hospitals
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Vazquez, Sima, Dominguez, Jose F., Lu, Victor M., Kumar, Vignessh, Shah, Sumedh, Brusko, G. Damian, and Levi, Allan D.
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- 2024
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28. Assessing the gut microbiome and the influence of host genetics on a critically endangered primate, the northern muriqui (Brachyteles hypoxanthus)
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Naiara Guimaraes Sales, Mariane daCruz Kaizer, Samuel S. Browett, Sofia I. Gabriel, and Allan D. McDevitt
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16S rRNA ,amplicon sequencing ,Atlantic Forest ,bacteria ,endemic ,microbiota ,Environmental sciences ,GE1-350 ,Microbial ecology ,QR100-130 - Abstract
Abstract The Northern muriqui (Brachyteles hypoxanthus) is one of the world's most critically endangered primates, with only ~1000 mature individuals remaining in the wild. Habitat loss and hunting have led to its sharp decline, making conservation efforts crucial. Analyses of gut microbiomes in wild populations can provide valuable information on host health and vulnerability, and ultimately, contribute to baseline knowledge toward improving conservation programs and reintroduction efforts. In this study, we analyzed the microbiome (16S rRNA metabarcoding) of fecal samples belonging to 53 uniquely genotyped individuals from three social groups from the Caparaó National Park, aiming to provide the first assessment of the microbiome diversity and composition for this species. Our results showed the muriqui gut microbiome was predominantly composed of the phyla Bacteroidetes and Firmicutes, with the dominant classes represented by Bacteroidia and Clostridia. High similarity in bacterial diversity and composition was found for individuals from distinct groups, suggesting a negligible geographical effect at the fine spatial scale analyzed. No significant effect of host genotype heterozygosity levels on microbiota diversity was recovered, but a significant influence of genetic distance on microbiota community structure and composition was demonstrated. Our findings stress the importance of considering associations between host genetics and the microbiome and suggest that the analyzed populations host a similar microbiome composition. This detailed microbiome assessment can aid conservation actions, including future anthropogenic impact assessments and animal reintroductions.
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- 2024
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29. Momentary Factors and Study Characteristics Associated With Participant Burden and Protocol Adherence: Ecological Momentary Assessment
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Allan D Tate, Angela R Fertig, Junia N de Brito, Émilie M Ellis, Christopher Patrick Carr, Amanda Trofholz, and Jerica M Berge
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Medicine - Abstract
BackgroundEcological momentary assessment (EMA) has become a popular mobile health study design to understand the lived experiences of dynamic environments. The numerous study design choices available to EMA researchers, however, may quickly increase participant burden and could affect overall adherence, which could limit the usability of the collected data. ObjectiveThis study quantifies what study design, participant attributes, and momentary factors may affect self-reported burden and adherence. MethodsThe EMA from the Phase 1 Family Matters Study (n=150 adult Black, Hmong, Latino or Latina, Native American, Somali, and White caregivers; n=1392 observation days) was examined to understand how participant self-reported survey burden was related to both design and momentary antecedents of adherence. The daily burden was measured by the question “Overall, how difficult was it for you to fill out the surveys today?” on a 5-item Likert scale (0=not at all and 4=extremely). Daily protocol adherence was defined as completing at least 2 signal-contingent surveys, 1 event-contingent survey, and 1 end-of-day survey each. Stress and mood were measured earlier in the day, sociodemographic and psychosocial characteristics were reported using a comprehensive cross-sectional survey, and EMA timestamps for weekends and weekdays were used to parameterize time-series models to evaluate prospective correlates of end-of-day study burden. ResultsThe burden was low at 1.2 (SD 1.14) indicating “a little” burden on average. Participants with elevated previous 30-day chronic stress levels (mean burden difference: 0.8; P=.04), 1 in 5 more immigrant households (P=.02), and the language primarily spoken in the home (P=.04; 3 in 20 more non-English–speaking households) were found to be population attributes of elevated moderate-high burden. Current and 1-day lagged nonadherence were correlated with elevated 0.39 and 0.36 burdens, respectively (P=.001), and the association decayed by the second day (β=0.08; P=.47). Unit increases in momentary antecedents, including daily depressed mood (P=.002) and across-day change in stress (P=.008), were positively associated with 0.15 and 0.07 higher end-of-day burdens after controlling for current-day adherence. ConclusionsThe 8-day EMA implementation appeared to capture momentary sources of stress and depressed mood without substantial burden to a racially or ethnically diverse and immigrant or refugee sample of parents. Attention to sociodemographic attributes (eg, EMA in the primary language of the caregiver) was important for minimizing participant burden and improving data quality. Momentary stress and depressed mood were strong determinants of participant-experienced EMA burden and may affect adherence to mobile health study protocols. There were no strong indicators of EMA design attributes that created a persistent burden for caregivers. EMA stands to be an important observational design to address dynamic public health challenges related to human-environment interactions when the design is carefully tailored to the study population and to study research objectives.
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- 2024
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30. Allopurinol and cardiovascular outcomes in patients with ischaemic heart disease: the ALL-HEART RCT and economic evaluation
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Isla S Mackenzie, Christopher J Hawkey, Ian Ford, Nicola Greenlaw, Filippo Pigazzani, Amy Rogers, Allan D Struthers, Alan G Begg, Li Wei, Anthony J Avery, Jaspal S Taggar, Andrew Walker, Suzanne L Duce, Rebecca J Barr, Jennifer S Dumbleton, Evelien D Rooke, Jonathan N Townend, Lewis D Ritchie, and Thomas M MacDonald
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allopurinol ,xanthine oxidase ,myocardial ischaemia ,myocardial infarction ,stroke ,cause of death ,cost-benefit analysis ,united kingdom ,cardiovascular system ,randomised controlled trials ,prospective studies ,humans ,gout ,multicentre studies ,Medical technology ,R855-855.5 - Abstract
Abstract Background Allopurinol is a xanthine oxidase inhibitor that lowers serum uric acid and is used to prevent acute gout flares in patients with gout. Observational and small interventional studies have suggested beneficial cardiovascular effects of allopurinol. Objective To determine whether allopurinol improves major cardiovascular outcomes in patients with ischaemic heart disease. Design Prospective, randomised, open-label, blinded endpoint multicentre clinical trial. Setting Four hundred and twenty-four UK primary care practices. Participants Aged 60 years and over with ischaemic heart disease but no gout. Interventions Participants were randomised (1 : 1) using a central web-based randomisation system to receive allopurinol up to 600 mg daily that was added to usual care or to continue usual care. Main outcome measures The primary outcome was the composite of non-fatal myocardial infarction, non-fatal stroke or cardiovascular death. Secondary outcomes were non-fatal myocardial infarction, non-fatal stroke, cardiovascular death, all-cause mortality, hospitalisation for heart failure, hospitalisation for acute coronary syndrome, coronary revascularisation, hospitalisation for acute coronary syndrome or coronary revascularisation, all cardiovascular hospitalisations, quality of life and cost-effectiveness. The hazard ratio (allopurinol vs. usual care) in a Cox proportional hazards model was assessed for superiority in a modified intention-to-treat analysis. Results From 7 February 2014 to 2 October 2017, 5937 participants were enrolled and randomised to the allopurinol arm (n = 2979) or the usual care arm (n = 2958). A total of 5721 randomised participants (2853 allopurinol; 2868 usual care) were included in the modified intention-to-treat analysis population (mean age 72.0 years; 75.5% male). There was no difference between the allopurinol and usual care arms in the primary endpoint, 314 (11.0%) participants in the allopurinol arm (2.47 events per 100 patient-years) and 325 (11.3%) in the usual care arm (2.37 events per 100 patient-years), hazard ratio 1.04 (95% confidence interval 0.89 to 1.21); p = 0.65. Two hundred and eighty-eight (10.1%) participants in the allopurinol arm and 303 (10.6%) participants in the usual care arm died, hazard ratio 1.02 (95% confidence interval 0.87 to 1.20); p = 0.77. The pre-specified health economic analysis plan was to perform a ‘within trial’ cost-utility analysis if there was no statistically significant difference in the primary endpoint, so NHS costs and quality-adjusted life-years were estimated over a 5-year period. The difference in costs between treatment arms was +£115 higher for allopurinol (95% confidence interval £17 to £210) with no difference in quality-adjusted life-years (95% confidence interval −0.061 to +0.060). We conclude that there is no evidence that allopurinol used in line with the study protocol is cost-effective. Limitations The results may not be generalisable to younger populations, other ethnic groups or patients with more acute ischaemic heart disease. One thousand six hundred and thirty-seven participants (57.4%) in the allopurinol arm withdrew from randomised treatment, but an on-treatment analysis gave similar results to the main analysis. Conclusions The ALL-HEART study showed that treatment with allopurinol 600 mg daily did not improve cardiovascular outcomes compared to usual care in patients with ischaemic heart disease. We conclude that allopurinol should not be recommended for the secondary prevention of cardiovascular events in patients with ischaemic heart disease but no gout. Future work The effects of allopurinol on cardiovascular outcomes in patients with ischaemic heart disease and co-existing hyperuricaemia or clinical gout could be explored in future studies. Trial registration This trial is registered as EU Clinical Trials Register (EudraCT 2013-003559-39) and ISRCTN (ISRCTN 32017426). Funding This award was funded by the National Institute for Health and Care Research (NIHR) Health Technology Assessment programme (NIHR award ref: 11/36/41) and is published in full in Health Technology Assessment; Vol. 28, No. 18. See the NIHR Funding and Awards website for further award information. Plain language summary What was the question? The purpose of the ALL-HEART study was to determine whether giving allopurinol to people with ischaemic heart disease (also commonly known as coronary heart disease) would reduce their risk of having a heart attack, stroke or of dying from cardiovascular disease. Allopurinol is a medication usually given to patients with gout to prevent acute gout flares. It is not currently used to treat ischaemic heart disease. What did we do? We randomly allocated people aged over 60 years with ischaemic heart disease to take up to 600 mg of allopurinol daily (in addition to their usual care) or to continue with their usual care. We then monitored participants for several years and recorded any major health events such as heart attacks, strokes and deaths. We obtained most of the follow-up data from centrally held electronic hospital admissions and death records, making the study easier for participants and more cost-efficient. We asked participants in both groups to complete questionnaires to assess their quality of life during the study. We also collected data to determine whether there was any economic benefit to the NHS of using allopurinol in patients with ischaemic heart disease. What did we find? There was no difference in the risk of heart attacks, strokes or death from cardiovascular disease between the participants given allopurinol and those in the group continuing their usual care. We also found no difference in the risks of other cardiovascular events, deaths from any cause or quality-of-life measurements between the allopurinol and usual care groups. What does this mean? The results of the ALL-HEART study suggest that we should not recommend that allopurinol be given to people with ischaemic heart disease to prevent further cardiovascular events or deaths. Scientific summary Background Allopurinol is a xanthine oxidase inhibitor that lowers serum uric acid (SUA) and is widely used in patients with gout to prevent acute gout flares. Xanthine oxidase promotes inflammation and atherosclerosis via the production of reactive oxygen species and xanthine oxidase levels are raised in several conditions including coronary artery disease. The role of SUA in cardiovascular (CV) disease is controversial, with some studies associating higher SUA levels with worse CV outcomes, but more recent genome-wide association studies suggest no major role of uric acid levels in determining CV outcomes. Some observational studies have suggested that allopurinol therapy may improve CV outcomes, while others have not found an association. Small interventional studies have shown that allopurinol therapy improves some CV parameters, including endothelial function, left ventricular hypertrophy, blood pressure, carotid intimal media thickness and arterial stiffness. Allopurinol therapy was also found to improve outcomes after acute coronary syndrome (ACS) in one study and to improve chest pain in patients with chronic stable angina with documented coronary artery disease in another. However, results have not been consistent across different studies. Before the ALL-HEART study, no large, randomised trial of the effects of allopurinol therapy on CV outcomes in patients with ischaemic heart disease (IHD) had been performed. Objectives Primary Does allopurinol therapy added to usual care improve major CV outcomes in patients aged over 60 years with IHD but no gout? Secondary Does allopurinol therapy added to usual care improve all-cause mortality or other CV outcomes in patients with IHD? What is the cost-effectiveness of adding allopurinol up to 600 mg daily to usual care in patients with IHD? Does allopurinol therapy added to usual care improve quality of life assessed by general health survey [EuroQol-5 Dimensions, five-level version (EQ-5D-5L)] or coronary heart disease-specific questionnaire (Seattle angina questionnaire)? Methods Design and participants The ALL-HEART study was a prospective, randomised, open-label, blinded endpoint (PROBE) multicentre trial undertaken in patients with IHD. Participants were primarily recruited from 424 primary care practices via 18 regional centres in the UK, with a small number also referred into the study from secondary care centres. Eligible patients were aged 60 years or over, with a history of IHD [myocardial infarction (MI), angina or other evidence of IHD]. Exclusion criteria were: history of gout; known severe renal impairment [estimated glomerular filtration rate (eGFR) < 30 ml/minute/1.73 m2]; moderate-to-severe heart failure (HF) [New York Heart Association (NYHA) III–IV]; significant hepatic disease [e.g. alanine transaminase (ALT) > 3 × upper limit of normal, cirrhosis, ascites] (investigator opinion); currently taking part in another interventional clinical trial of an investigational medicinal product or medical device (or taken part in one within the last 3 months); previous allergy to allopurinol; previous serious adverse cutaneous (skin) reaction to any drug (e.g. Stevens–Johnson syndrome, toxic epidermal necrolysis, hospitalisation due to skin reaction to drug) (investigator opinion); already taking urate-lowering therapy (including allopurinol, febuxostat, sulfinpyrazone, benzbromarone, probenecid, rasburicase); taking azathioprine, mercaptopurine, ciclosporin or theophylline; malignancy (except non-metastatic, non-melanoma skin cancers, cervical in situ carcinoma, breast ductal carcinoma in situ, or stage 1 prostate carcinoma) within the last 5 years (investigator opinion). The exclusion criterion relating to renal impairment was originally ‘known renal impairment eGFR < 60 ml/minute/1.73 m2’ for patients recruited from the start of the trial (7 February 2014) until 4 April 2016 when an updated version of the protocol was implemented at all study sites to allow the inclusion of patients with moderate renal impairment in the study with the purpose of making the study results more generalisable. Fifty-two per cent of the target number of patients had been randomised by this date. Randomisation At a single screening and randomisation visit usually held at the patient’s primary care practice by a research nurse, patients were consented, screened and randomised to receive allopurinol therapy or to continue their usual care. Baseline demographics, medical history, CV risk factors and concomitant medications were recorded. Blood pressure, height and weight were measured. Baseline blood tests were taken for urea, creatinine and electrolytes, full blood count and SUA. Participants were randomised before screening blood results were available. When the screening results were available, a nurse telephoned the patient to advise them to start taking randomised therapy. If the screening visit eGFR result was below the exclusion limit, the participant did not receive any allopurinol and was excluded from the modified intention-to-treat (mITT) analysis population, whichever arm of the study they had been randomised to. Randomisation was via a web-based randomisation facility located at the Robertson Centre for Biostatistics, University of Glasgow, accessed using a web-based application or an interactive voice response system. Randomisation was based on randomised permuted blocks of variable size, stratified by history of MI, history of stroke and primary care practice. Randomised intervention Allopurinol 100 or 300 mg tablets were prescribed to participants by their primary care physicians via the usual NHS prescription system. Participants with a screening eGFR result ≥ 60 ml/minute/1.73 m2 were prescribed allopurinol at 100 mg daily for 2 weeks, then 300 mg daily for 2 weeks then 600 mg daily (given as 300 mg twice daily) thereafter if tolerated for the duration of the study. After 4 April 2016, participants with a screening eGFR result 30–59 ml/minute/1.73 m2 were prescribed allopurinol at 100 mg daily for 2 weeks, then 300 mg daily thereafter if tolerated for the duration of the study. If there were tolerability issues, the dose could be decreased at the discretion of a physician. Participants who stopped randomised therapy were encouraged to continue with study follow-up. The comparison arm of the study was ‘usual care’; no placebo was given as this was a pragmatic open-label study. Randomised therapy was blinded to the endpoint adjudication committee, but not to participants, study staff or treating healthcare professionals. If allopurinol was started in participants randomised to the usual care group at any point in the study (e.g. for clinical reasons such as developing gout), this was recorded. Other study procedures At the screening visit, participants completed the EQ-5D-5L questionnaire to assess general health outcomes and the Seattle angina questionnaire to assess coronary artery disease-specific quality of life. Participants who had taken any allopurinol therapy attended a 6-week study visit. Blood samples were taken for urea, creatinine and electrolytes, full blood count and SUA. Participants were then followed up remotely by electronic record-linkage with centralised databases of hospitalisations, cancers and deaths held by Public Health Scotland (PHS) and NHS Digital and by annual questionnaires (online, by post or by telephone). Data on adverse events, skin rashes, gout flares and self-reported adherence to randomised therapy were collected at the 6-week visit, then by annual questionnaire (but could also be reported at any time by participants or health professionals). Participants completed the EQ-5D-5L and Seattle angina questionnaires again after 1 year and at the end of the trial. The trial recruitment period was extended once, and the trial follow-up period was extended twice. Recruitment exceeded the target of 5215 randomised participants to a final total of 5937 randomised participants due to an increase in recruitment rate in the last weeks of recruitment. The follow-up period of the trial ended on 30 September 2021. After this date, participants stopped randomised therapy and continued to receive their usual care. Study outcomes The primary and secondary outcomes were as follows. Primary outcome: Composite of non-fatal MI, non-fatal stroke or CV death. Secondary outcomes: Non-fatal MI. Non-fatal stroke. CV death. All-cause mortality. Hospitalisation for ACS. Coronary revascularisation. Hospitalisation for ACS or coronary revascularisation. Hospitalisation for HF. All CV hospitalisations. Quality of life. Cost-effectiveness. Adverse events Serious adverse events (SAEs) occurring during the study (until 30 September 2021) were recorded and any events ongoing at that time were followed up for a further 30 days, unless consent had been withdrawn. Treatment-related adverse events (adverse reactions), gout flares and rashes were also recorded. Allopurinol therapy was stopped if participants developed a rash that may have been due to allopurinol. For any SAEs that were potential study endpoints, detailed information was obtained from medical records and death certificates to support the production of an anonymised endpoint package that was adjudicated by an independent clinical endpoint adjudication committee, blinded to randomised therapy allocation. Statistical analysis The power calculation suggested that 5215 participants would need to be randomised 1 : 1 to give 80% power to detect a 20% reduction in the primary outcome for the intervention (allowing for a 4% dropout for withdrawal of consent and non-CV deaths). A primary event rate of 14% over an average of 4 years follow-up was estimated from other trials in similar patient groups. The study ended when 631 adjudicated first primary events had occurred. Baseline characteristics are presented by treatment group as means [standard deviation (SD)] and medians [interquartile range (IQR)] for continuous variables and as numbers (%) for categorical variables. Clinical outcomes were analysed on a time-to-first event basis using Cox proportional hazards models. Treatment effects (allopurinol vs. usual care) were estimated as hazard ratios (HR) and 95% confidence intervals (CIs) for the Cox models. Analyses were adjusted for the stratification variables history of MI and history of stroke and p-values were calculated from Wald statistics. The primary analysis was a mITT analysis. Health economic analysis A health economic analysis was planned to determine whether allopurinol was a cost-effective intervention in the context of the NHS setting in the UK in patients with IHD. The analysis plan was based around NHS costs and estimation of quality-adjusted life-years (QALYs) and was to include a ‘within trial’ cost–utility analysis if the primary outcome was not statistically different between randomised study arms. Trial approvals and committees The study was approved by an ethics committee, Medicines and Healthcare Products Regulatory Agency (MHRA) and Health Research Authority (HRA). An Independent Data Monitoring Committee oversaw trial safety. A Trial Steering Committee including independent and patient/lay members oversaw trial progress. Results From 7 February 2014 to 29 September 2017, 6134 patients consented to enrol in the trial and were assessed for eligibility. Also, 167 of the 6134 consented participants were not eligible and 30 others were not randomised. The final randomisation was completed on 2 October 2017. Of the 5937 randomised participants, 216 were excluded post randomisation from the mITT analysis population (184 did not meet the eGFR entry criteria once their screening blood results were available; 32 were later found to have not met all of the inclusion/exclusion criteria). Five thousand seven hundred and twenty-one participants (2853 in the allopurinol arm and 2868 in the usual care arm) were included in the mITT analysis population for the efficacy analysis. The population for safety analyses consisted of 2805 participants in the allopurinol arm (excluding the 48 participants in the allopurinol arm who never received any randomised therapy) and 2868 participants in the usual care arm. The mean duration of follow-up in the trial was 4.8 years. Two hundred and fifty-eight participants (9.0%) in the allopurinol group and 76 participants (2.6%) in the usual care group withdrew consent for all follow-up. One thousand six hundred and thirty-seven participants (57.4%) in the allopurinol arm withdrew from randomised treatment. Baseline characteristics were well balanced in the two groups. The mean age at study entry was 72.0 years (SD 6.8), 4321 participants (75.5%) were male, 5676 (99.2%) were white and 1241 (21.7%) had a history of diabetes mellitus. The median duration of IHD at study entry was 10.1 years (IQR 5.1–16.1). Three thousand four hundred and sixty-four (60.5%) participants were recruited in England and 2257 (39.5%) participants in Scotland. The most commonly taken dose of allopurinol was 600 mg daily. In the 2447 participants in the allopurinol arm with both a baseline and 6-week SUA result, SUA fell from a mean of 0.34 (SD 0.08) mmol/l at baseline to a mean of 0.18 (SD 0.09) mmol/l 6 weeks after randomisation. Forty-five participants in the usual care arm started allopurinol therapy during follow-up (for clinical reasons, mainly gout). Primary and secondary outcomes There was no significant difference between the randomised treatment groups in the rates of the primary outcome or any of the secondary time-to-event outcomes. Three hundred and fourteen (11.0%) participants in the allopurinol arm (2.47 events per 100 patient-years) and 325 (11.3%) in the usual care arm (2.37 events per 100 patient-years) experienced a primary outcome, HR 1.04 (95% CI 0.89 to 1.21); p = 0.65. Two hundred and eighty-eight (10.1%) participants in the allopurinol arm and 303 (10.6%) participants in the usual care arm died, HR 1.02 (95% CI 0.87 to 1.20); p = 0.77. Results for the primary outcome were consistent across all pre-specified subgroups. In a supporting on-treatment analysis, results for the time-to-event clinical outcomes were broadly similar to those in the mITT analysis. There was limited evidence of any effect of allopurinol on quality-of-life outcomes, with no differences in EQ-5D-5L outcomes or Seattle angina questionnaire outcomes at the end of the first year or at the final visit, except for a nominally significant but only slightly greater fall in the physical domain score of the Seattle angina questionnaire at the end of the first year [treatment difference = 1.219 (95% CI 0.027 to 2.410); p = 0.045] in the allopurinol arm. Health economic analysis There was strong evidence that allopurinol treatment was associated with incremental costs relative to usual care [incremental cost per patient £115.4, 95% CI (£17.0 to £210.2)], with little evidence of improvement in relation to incremental QALYs [incremental QALYs −0.000, 95% CI (−0.061 to 0.060)]. The cost-effectiveness acceptability curve asymptoted at a probability of 0.456, meaning that even with a willingness to pay of an infinite amount, the probability of cost-effectiveness was only 0.465. At a willingness to pay of £20,000 the probability of cost-effectiveness was 0.41. Adverse events There was no difference in SAE rates between treatment arms, except for the grouping of endocrine disorders where no events occurred in the allopurinol treatment group but 14 in the usual care group. However, these endocrine events included events with a spread of different types. Fifteen participants had SAEs that were considered potentially treatment related and none of these were fatal. There was no difference between treatment arms in the rates of incident cancers. Adjudicated causes of death were well balanced between the treatment groups, including deaths from COVID-19 and COVID-19 pneumonia. Conclusions The ALL-HEART study showed that treatment with allopurinol 600 mg daily did not improve CV outcomes compared to usual care in patients with IHD. There were also no benefits on quality of life. There was no evidence that allopurinol used in line with the study protocol is cost-effective within the NHS system. We conclude that allopurinol should not be recommended for the secondary prevention of CV events in patients with IHD but no gout. Recommendations for research Future research should explore other therapeutic options for the improvement of CV outcomes and quality of life in patients with IHD. Further exploration of the effects of allopurinol on CV outcomes in patients with co-existing IHD and clinical gout or hyperuricaemia could be considered (patients with gout were excluded from this study). Trial registration The ALL-HEART trial is registered with the EU Clinical Trials Register (EudraCT 2013-003559-39) and ISRCTN (ISRCTN 32017426). Funding This award was funded by the National Institute for Health and Care Research (NIHR) Health Technology Assessment programme (NIHR award ref: 11/36/41) and is published in full in Health Technology Assessment; Vol. 28, No. 18. See the NIHR Funding and Awards website for further award information.
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- 2024
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31. A Model for Efficiently Allocating Resources to Mitigate Wildfire Risk along California Roadways
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Whitney, Jason P., Hollander, Allan D., Boynton, Ryan M., Shapiro, Kristen D., Thorne, James H., and Worthington, Lisa Ann
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Right of way (Land) ,Risk assessment ,Vegetation ,Wildfires - Abstract
A key function of a highway network is to maintain access during normal and emergency operations. During wildfire evacuations, first-responders and firefighters depend on highways and local roads for transporting heavy equipment to communities in need. The California Department of Transportation (Caltrans) is expanding vegetation management to begin establishing defensible space zones along California’s nearly 16,000 miles of state highways and in about 230,000 acres of highway right-ofway. However, extended drought, a longer fire season, and higher temperatures brought on by climate change, along with the spread of invasive weeds and dense, dry vegetation, have created new challenges.The California Department of Forestry and Fire Protection produced a Community Wildfire Prevention and Mitigation Report in 2019 with a methodology to assess wildfire risk. Caltrans and researchers at the University of California, Davis applied these methods to develop a highway-segment-specific prioritization model for vegetation management within highway rights-of-way. The researchers also interviewed Caltrans staff about opportunities for and obstacles to increasing the pace and scale of vegetation treatments. This policy brief summarizes the findings from that research and provides policy implications.View the NCST Project Webpage
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- 2022
32. Design and Implementation of a Workshop for Evaluation of the Role of Power in Shaping and Solving Challenges in a Smart Foodshed
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Hyder, Ayaz, Blatt, Angela, Hollander, Allan D, Hoy, Casey, Huber, Patrick R, Lange, Matthew C, Quinn, James F, Riggle, Courtney M, Sloan, Ruth, and Tomich, Thomas P
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Zero Hunger ,power relationships ,food system ,foodshed ,community engagement ,ontology ,public health ,Built Environment and Design - Abstract
Current studies on data sharing via data commons or shared vocabularies using ontologies mainly focus on developing the infrastructure for data sharing yet little attention has been paid to the role of power in data sharing among food system stakeholders. Stakeholders within food systems have different interpretations of the types and magnitudes of their own and other’s level of power to solve food system challenges. Politically neutral, yet scientifically/socioeconomically accurate power classification systems are yet to be developed, and must be capable of enumerating and characterizing what power means to each stakeholder, existing power dynamics within the food system, as well as alternative forms of power not currently utilized to their full capacity. This study describes the design and implementation of a workshop, which used methods from community-based participatory modeling, to examine the role of power relative to data sharing and equitable health outcomes. Workshop participants co-created several boundary objects that described the power relationships among food system stakeholders and the changes needed to current power relationships. Our results highlight current imbalances in power relationships among food system stakeholders. The information we collected on specific relationships among broad categories of stakeholders highlighted needs for initiatives and activities to increase the types and varieties of power especially across consumers, farmers, and labor stakeholder groups. Furthermore, by utilizing this workshop methodology, food system stakeholders may be able to envision new power relationships and bring about a fundamental re-orienting of current power relationships capable of valorizing food system sustainability/resiliency, especially the health of its workers and consumers.
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- 2022
33. Recent Trends in Successful Neurosurgery Resident Matriculation: A Retrospective and Bibliometric Analysis
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Koester, Stefan W., Bishay, Anthony E., Lyons, Alexander T., Lu, Victor M., Naik, Anant, Graffeo, Christopher S., Levi, Allan D., and Komotar, Ricardo J.
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- 2024
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34. The Causal-Benefit Model to Prevent Cardiovascular Events
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Kohli-Lynch, Ciaran, Thanassoulis, George, Pencina, Michael, Sehayek, Daniel, Pencina, Karol, Moran, Andrew, and Sniderman, Allan D.
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- 2024
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35. Assessment Report: Benchmarking Sustainability for Banana Production in Ecuador
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Riggle, Courtney M, Huber, Patrick R, and Hollander, Allan D
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sustainability ,bananas ,agricultural production ,Ecuador - Abstract
This report documents a sustainability assessment for banana production in Ecuador. The overarching goal of this assessment was to aid the Ecuadorian banana industry in improving its sustainability footprint for the entire industry—at a national level. The starting point for improving system‐wide sustainability was to conduct a baseline assessment of the current sustainability situation to identify and measure a suite of indicators for use as a benchmark in both guiding strategies and measuring progress. This assessment was designed to review the state of the banana sector and correlated activities within Ecuador and not function as a comparative assessment against other countries or actors – which would require a similar assessment for each actor.
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- 2022
36. A malleable workflow for identifying the issues and indicators that define and measure sustainability in food systems
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Springer, Nathaniel P, Hollander, Allan D, Huber, Patrick R, Riggle, Courtney, and Tomich, Thomas P
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Agricultural ,Veterinary and Food Sciences ,Environmental Sciences ,Generic health relevance ,raw material sourcing ,Semantic Web (Web 3 ,0) ,indicators & metrics ,materiality analysis ,stakeholder decision-making ,Agricultural ,veterinary and food sciences ,Environmental sciences - Abstract
A variety of stakeholders are concerned with many issues regarding the sustainability of our complex global food system. Yet navigating and comparing the plethora of issues and indicators across scales, commodities, and regions can be daunting, particularly for different communities of practice with diverse goals, perspectives, and decision-making workflows. This study presents a malleable workflow to help different stakeholder groups identify the issues and indicators that define food system sustainability for their particular use case. By making information used in such workflows semantically-consistent, the output from each unique case can be easily compared and contrasted across domains, contributing to both a deeper and broader understanding of what issues and indicators define a resilient global food system.
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- 2022
37. Ultrasound stimulation of the motor cortex during tonic muscle contraction
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Heimbuch, Ian S, Fan, Tiffany K, Wu, Allan D, Faas, Guido C, Charles, Andrew C, and Iacoboni, Marco
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Engineering ,Physical Sciences ,Biomedical Engineering ,Biomedical Imaging ,Bioengineering ,Neurosciences ,Neurological ,Electric Stimulation ,Electromyography ,Evoked Potentials ,Motor ,Humans ,Motor Cortex ,Muscle Contraction ,Muscle ,Skeletal ,Transcranial Magnetic Stimulation ,General Science & Technology - Abstract
Transcranial ultrasound stimulation (tUS) shows potential as a noninvasive brain stimulation (NIBS) technique, offering increased spatial precision compared to other NIBS techniques. However, its reported effects on primary motor cortex (M1) are limited. We aimed to better understand tUS effects in human M1 by performing tUS of the hand area of M1 (M1hand) during tonic muscle contraction of the index finger. Stimulation during muscle contraction was chosen because of the transcranial magnetic stimulation-induced phenomenon known as cortical silent period (cSP), in which transcranial magnetic stimulation (TMS) of M1hand involuntarily suppresses voluntary motor activity. Since cSP is widely considered an inhibitory phenomenon, it presents an ideal parallel for tUS, which has often been proposed to preferentially influence inhibitory interneurons. Recording electromyography (EMG) of the first dorsal interosseous (FDI) muscle, we investigated effects on muscle activity both during and after tUS. We found no change in FDI EMG activity concurrent with tUS stimulation. Using single-pulse TMS, we found no difference in M1 excitability before versus after sparsely repetitive tUS exposure. Using acoustic simulations in models made from structural MRI of the participants that matched the experimental setups, we estimated in-brain pressures and generated an estimate of cumulative tUS exposure experienced by M1hand for each subject. We were unable to find any correlation between cumulative M1hand exposure and M1 excitability change. We also present data that suggest a TMS-induced MEP always preceded a near-threshold cSP.
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- 2022
38. BMP4-Induced Suppression of Breast Cancer Metastasis Is Associated with Inhibition of Cholesterol Biosynthesis
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Lap Hing Chi, Andrew D. Redfern, Terry C. C. Lim Kam Sian, Ian P. Street, Allan D. Burrows, Suraya Roslan, Roger J. Daly, and Robin L. Anderson
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breast cancer ,metastasis ,BMP4 ,cholesterol biosynthesis ,statins ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
We reported previously that in preclinical models, BMP4 is a potent inhibitor of breast cancer metastasis and that high BMP4 protein levels predict favourable patient outcomes. Here, we analysed a breast cancer xenograft with or without enforced expression of BMP4 to gain insight into the mechanisms by which BMP4 suppresses metastasis. Transcriptomic analysis of cancer cells recovered from primary tumours and phosphoproteomic analyses of cancer cells exposed to recombinant BMP4 revealed that BMP4 inhibits cholesterol biosynthesis, with many genes in this biosynthetic pathway being downregulated by BMP4. The treatment of mice bearing low-BMP4 xenografts with a cholesterol-lowering statin partially mimicked the anti-metastatic activity of BMP4. Analysis of a cohort of primary breast cancers revealed a reduced relapse rate for patients on statin therapy if their tumours exhibited low BMP4 levels. These findings indicate that BMP4 may represent a predictive biomarker for the benefit of additional statin therapy in breast cancer patients.
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- 2024
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39. StepFormer: Self-Supervised Step Discovery and Localization in Instructional Videos.
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Nikita Dvornik, Isma Hadji, Ran Zhang, Konstantinos G. Derpanis, Richard P. Wildes, and Allan D. Jepson
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- 2023
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40. Efficient Flow-Guided Multi-frame De-fencing.
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Stavros Tsogkas, Fengjia Zhang, Allan D. Jepson, and Alex Levinshtein
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- 2023
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41. Positron Collisions
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Machacek, Joshua R., McEachran, Robert P., Stauffer, Allan D., and Drake, Gordon W. F., editor
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- 2023
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42. Surgery in the Peripheral Nervous System
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Soldozy, Sauson, Burks, S. Shelby, Levi, Allan D., Seubert, Christoph N., editor, and Balzer, Jeffrey R., editor
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- 2023
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43. Immunomodulation of T cell-mediated alloimmunity by proximity to endothelial cells under the mammalian target of rapamycin blockade
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Li, Shu, Wang, Liuyang, Bendersky, Victoria A., Gao, Qimeng, Wang, Jun, Xu, He, and Kirk, Allan D.
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- 2024
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44. Challenges in advancing Schwann cell transplantation for spinal cord injury repair
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Guest, James D., Santamaria, Andrea J., Solano, Juan. P., de Rivero Vaccari, Juan P., Dietrich, William D., Pearse, Damien D., Khan, Aisha, and Levi, Allan D.
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- 2024
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45. Decreased patient comorbidities and post-operative complications in technology-assisted compared to conventional total knee arthroplasty
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O’Rourke, Ryan J., Milto, Anthony J., Kurcz, Brian P., Scaife, Steven L., Allan, D. Gordon, and El Bitar, Youssef
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- 2023
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46. Did the COVID-19 Pandemic Disproportionately Affect the Most Socioeconomically Vulnerable Areas of Brazil?
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Jonatha C. dos Santos Alves, Caíque J. N. Ribeiro, Shirley V. M. A. Lima, Gabriel S. Morato, Lucas A. Andrade, Márcio B. Santos, Álvaro F. Lopes de Sousa, Katya A. Nogales Crespo, Damião da C. Araújo, and Allan D. dos Santos
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COVID-19 ,social determinants of health ,spatial analysis ,syndemic ,Specialties of internal medicine ,RC581-951 - Abstract
Objective: To analyze the spatial pattern of the incidence of COVID-19 in association with social determinants of health (SDH) in the Northeast Region of Brazil during the first year of the pandemic. Methods: We conducted an ecological analytical study that included notifications made between 27 March 2020 and 27 March 2021. The data analysis used two global regression models: the ordinary least squares (OLS) and spatial lag model and the geographically weighted multiscale regression model (GWMSR). Results: We observed that the Gini index, illiteracy rate, percentages of people living below the poverty line, people in households who were vulnerable to poverty, and dependent elderly people are predictors of a higher incidence of COVID-19 in Northeast Brazil. Conclusions: Results of this study may contribute to generating new hypotheses for studies focusing on the syndemic process and for the formulation of intersectoral public policies targeting the population at greatest vulnerability to minimize the impact of the disease.
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- 2023
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47. Association of bradykinin receptor 2 (BDKRB2) variants with physical performance and muscle mass: Findings from the LACE sarcopenia trial.
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Alvin Shrestha, Tufail Bashir, Marcus Achison, Simon Adamson, Asangaedem Akpan, Terry Aspray, Alison Avenell, Margaret M Band, Louise A Burton, Vera Cvoro, Peter T Donnan, Gordon W Duncan, Jacob George, Adam L Gordon, Celia L Gregson, Adrian Hapca, Cheryl Hume, Thomas A Jackson, Simon Kerr, Alixe Kilgour, Tahir Masud, Andrew McKenzie, Emma McKenzie, Harnish Patel, Kristina Pilvinyte, Helen C Roberts, Avan A Sayer, Christos Rossios, Karen T Smith, Roy L Soiza, Claire J Steves, Allan D Struthers, Divya Tiwari, Julie Whitney, Miles D Witham, and Paul R Kemp
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Medicine ,Science - Abstract
IntroductionUnderstanding genetic contributors to sarcopenia (age-related loss of muscle strength and mass) is key to finding effective therapies. Variants of the bradykinin receptor 2 (BDKRB2) have been linked to athletic and muscle performance. The rs1799722-9 and rs5810761 T alleles have been shown to be overrepresented in endurance athletes, possibly due to increased transcriptional rates of the receptor. These variants have been rarely studied in older people or people with sarcopenia.MethodsWe performed a post hoc sub-study of the Leucine and ACE (LACE) inhibitor trial, which enrolled 145 participants aged ≥70 years with low grip strength and low gait speed. Participants' blood samples were genotyped for rs179972 using TaqMan and rs5810761 by amplification through Hotstar Taq. Genotypes were compared with outcomes of physical performance and body composition measures.ResultsData from 136 individuals were included in the analysis. For rs1799722 the genotype frequency (TT: 17, CC: 48, CT: 71) remained in Hardy-Weinberg Equilibrium (HWE p = 0.248). There was no difference between the genotypes for six-Minute Walk Distance (6MWD) or Short Physical Performance Battery (SPPB). Men with the TT genotype had a significantly greater 6MWD than other genotypes (TT 400m vs CT 310m vs CC 314m, p = 0.027), and greater leg muscle mass (TT 17.59kg vs CT 15.04kg vs CC 15.65kg, p = 0.007). For rs5810761, the genotype frequency (-9-9: 31, +9+9: 43, -9+9: 60) remained in HWE (p = 0.269). The +9+9 genotype was associated with a significant change in SPPB score at 12 months (-9-9 0 vs -9+9 0 vs +9+9-1, pConclusionIn men, the rs1799722 TT genotype was associated with longer 6MWD and greater leg muscle mass, while the rs5810761 -9-9 genotype was associated with lower arm fat mass.
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- 2024
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48. Functional diversity of bacterial microbiota associated with the toxigenic benthic dinoflagellate Prorocentrum.
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Miguel A Martínez-Mercado, Allan D Cembella, Edna Sánchez-Castrejón, Anaid Saavedra-Flores, Clara E Galindo-Sánchez, and Lorena M Durán-Riveroll
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Medicine ,Science - Abstract
Interactions between bacterial microbiota and epibenthic species of the dinoflagellate Prorocentrum may define the onset and persistence of benthic harmful algal blooms (bHABs). Chemical ecological interactions within the dinoflagellate phycosphere potentially involve a complex variety of organic molecules, metabolites, and toxins, including undefined bioactive compounds. In this study, the bacterial diversity and core members of the dinoflagellate-associated microbiota were defined from 11 strains of three epibenthic Prorocentrum species, representing three geographically disjunct locations within Mexican coastal waters. Microbiota profiles in stable monoclonal Prorocentrum cultures were obtained by sequencing amplicons of the V3-V4 region of the 16S rRNA gene. Thirteen classes of bacteria were identified among dinoflagellate clones, where Alphaproteobacteria, Gammaproteobacteria, and Bacteroidia were consistently dominant. The bacterial community structure exhibited significantly different grouping by the location of origin of dinoflagellate clones. No significant diversity difference was found among free-living or unattached bacteria in the dinoflagellate culture medium (M) compared with those in closer association with the dinoflagellate host cells (H). Twelve taxa were defined as core members of the bacterial assemblage, representing the genera Algiphilus, Cohaesibacter, Labrenzia, Mameliella, Marinobacter, Marivita, Massilia, Muricauda, Roseitalea, and an unclassified member of the Rhodobacteraceae. The core members are inferred to significantly contribute to primary and secondary metabolic functions, but no direct correlation with dinoflagellate toxigenicity was apparent. Overall the bacterial profile and implied gene functionality indicated a suite of positive interactions, suggesting either mutualism or commensalism with the dinoflagellate. The further characterization and interpretation of specific gene functions and interactions between bacteria and dinoflagellates, such as epibenthic members of genus Prorocentrum, are key to understanding their role in toxigenesis and bHAB development.
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- 2024
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49. Coupling remote sensing and eDNA to monitor environmental impact: A pilot to quantify the environmental benefits of sustainable agriculture in the Brazilian Amazon
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Karen Dyson, Andréa P. Nicolau, Karis Tenneson, Wendy Francesconi, Amy Daniels, Giulia Andrich, Bernardo Caldas, Silvia Castaño, Nathanael de Campos, John Dilger, Vinicius Guidotti, Iara Jaques, Ian M. McCullough, Allan D. McDevitt, Luis Molina, Dawn M. Nekorchuk, Tom Newberry, Cristiano Lima Pereira, Jorge Perez, Teal Richards-Dimitrie, Ovidio Rivera, Beatriz Rodriguez, Naiara Sales, Jhon Tello, Crystal Wespestad, Brian Zutta, and David Saah
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Medicine ,Science - Published
- 2024
50. Standardizing default electronic health record tools to improve safety for hospitalized patients with Parkinson’s disease
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Allan D. Wu, Benjamin L. Walter, Anne Brooks, Emily Buetow, Katherine Amodeo, Irene Richard, Kelly Mundth, and Hooman Azmi
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electronic health record ,Parkinson’s disease ,hospitalization ,safety ,Epic Systems ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Electronic Health Record (EHR) systems are often configured to address challenges and improve patient safety for persons with Parkinson’s disease (PWP). For example, EHR systems can help identify Parkinson’s disease (PD) patients across the hospital by flagging a patient’s diagnosis in their chart, preventing errors in medication and dosing through the use of clinical decision support, and supplementing staff education through care plans that provide step-by-step road maps for disease-based care of a specific patient population. However, most EHR-based solutions are locally developed and, thus, difficult to scale widely or apply uniformly across hospital systems. In 2020, the Parkinson’s Foundation, a national and international leader in PD research, education, and advocacy, and Epic, a leading EHR vendor with more than 35% market share in the United States, launched a partnership to reduce risks to hospitalized PWP using standardized EHR-based solutions. This article discusses that project which included leadership from physician informaticists, movement disorders specialists, hospital quality officers, the Parkinson’s Foundation and members of the Parkinson’s community. We describe the best practice solutions developed through this project. We highlight those that are currently available as standard defaults or options within the Epic EHR, discuss the successes and limitations of these solutions, and consider opportunities for scalability in environments beyond a single EHR vendor. The Parkinson’s Foundation and Epic launched a partnership to develop best practice solutions in the Epic EHR system to improve safety for PWP in the hospital. The goal of the partnership was to create the EHR tools that will have the greatest impact on outcomes for hospitalized PWP.
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- 2024
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